mRNA_H-elongata_contig176752.4632.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig176752.4632.1
Unique NamemRNA_H-elongata_contig176752.4632.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig176752.4632.1 vs. uniprot
Match: D7G4T1_ECTSI (Serine/threonine-protein phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4T1_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.410e-30
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQV 156
            GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQV
Sbjct:  201 GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQV 252
[Close]
BLAST of mRNA_H-elongata_contig176752.4632.1 vs. uniprot
Match: A0A6H5L5X9_9PHAE (Serine/threonine-protein phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5X9_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.600e-30
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQV 156
            GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQV
Sbjct:  217 GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQV 268
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BLAST of mRNA_H-elongata_contig176752.4632.1 vs. uniprot
Match: A0A7S0B047_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B047_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.370e-29
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:    1 GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQV 156
            GLLCDLLWSDPD+DI GWGENDRGVSFTFGEDIV QFL +HDLDLICRAHQV
Sbjct:   32 GLLCDLLWSDPDKDIDGWGENDRGVSFTFGEDIVAQFLHKHDLDLICRAHQV 83
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BLAST of mRNA_H-elongata_contig176752.4632.1 vs. uniprot
Match: A0A7S2D5J7_9STRA (Serine/threonine-protein phosphatase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D5J7_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.760e-29
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    1 GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQV 156
            GLLCDLLWSDPD+DI+GWGENDRGVSFTFGEDIV QFLRRHDLDLICRAHQV
Sbjct:  199 GLLCDLLWSDPDKDIVGWGENDRGVSFTFGEDIVAQFLRRHDLDLICRAHQV 250
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BLAST of mRNA_H-elongata_contig176752.4632.1 vs. uniprot
Match: A0A835Z0T8_9STRA (Serine/threonine-protein phosphatase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0T8_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.840e-29
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    1 GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQV 156
            GLLCDLLWSDPDRD IGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQV
Sbjct:  285 GLLCDLLWSDPDRDTIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQV 336
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BLAST of mRNA_H-elongata_contig176752.4632.1 vs. uniprot
Match: A0A7S3UUT0_HETAK (Serine/threonine-protein phosphatase n=2 Tax=Chattonellaceae TaxID=658124 RepID=A0A7S3UUT0_HETAK)

HSP 1 Score: 114 bits (285), Expect = 2.240e-29
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    1 GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQV 156
            GLLCDLLWSDPD+DI+GWGENDRGVSFTFGEDIV QFLRRHDLDLICRAHQV
Sbjct:  205 GLLCDLLWSDPDKDIVGWGENDRGVSFTFGEDIVAQFLRRHDLDLICRAHQV 256
[Close]
BLAST of mRNA_H-elongata_contig176752.4632.1 vs. uniprot
Match: A0A7S3GVJ9_9STRA (Serine/threonine-protein phosphatase n=2 Tax=cellular organisms TaxID=131567 RepID=A0A7S3GVJ9_9STRA)

HSP 1 Score: 112 bits (281), Expect = 6.840e-29
Identity = 47/52 (90.38%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    1 GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQV 156
            GLLCDLLW+DPD+DI+GWGENDRGVSFTFGED+V QFLRRHDLDLICRAHQV
Sbjct:  199 GLLCDLLWADPDKDIVGWGENDRGVSFTFGEDVVAQFLRRHDLDLICRAHQV 250
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BLAST of mRNA_H-elongata_contig176752.4632.1 vs. uniprot
Match: A0A3P6R9L5_CYLGO (SER_THR_PHOSPHATASE domain-containing protein (Fragment) n=1 Tax=Cylicostephanus goldi TaxID=71465 RepID=A0A3P6R9L5_CYLGO)

HSP 1 Score: 106 bits (264), Expect = 1.230e-28
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQV 156
            GLLCDLLWSDPD+D+ GWGENDRGVSFTFG D+V +FL RHDLDLICRAHQV
Sbjct:    5 GLLCDLLWSDPDKDVTGWGENDRGVSFTFGPDVVAKFLNRHDLDLICRAHQV 56
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BLAST of mRNA_H-elongata_contig176752.4632.1 vs. uniprot
Match: A0A2G9UXN1_TELCI (Phosphoprotein phosphatase 1 domain protein n=1 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9UXN1_TELCI)

HSP 1 Score: 105 bits (263), Expect = 2.260e-28
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQV 156
            GLLCDLLWSDPD+D+ GWGENDRGVSFTFG D+V +FL RHDLDLICRAHQV
Sbjct:   17 GLLCDLLWSDPDKDVTGWGENDRGVSFTFGPDVVAKFLTRHDLDLICRAHQV 68
[Close]
BLAST of mRNA_H-elongata_contig176752.4632.1 vs. uniprot
Match: A0A6H5JFB0_9PHAE (Serine/threonine-protein phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFB0_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.470e-28
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQV 156
            GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIV  FL  HDLDLICRAHQV
Sbjct:  141 GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVRDFLASHDLDLICRAHQV 192
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176752.4632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4T1_ECTSI1.410e-30100.00Serine/threonine-protein phosphatase n=1 Tax=Ectoc... [more]
A0A6H5L5X9_9PHAE1.600e-30100.00Serine/threonine-protein phosphatase n=1 Tax=Ectoc... [more]
A0A7S0B047_9STRA1.370e-2990.38Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A7S2D5J7_9STRA1.760e-2994.23Serine/threonine-protein phosphatase n=1 Tax=Flore... [more]
A0A835Z0T8_9STRA1.840e-2998.08Serine/threonine-protein phosphatase n=2 Tax=Tribo... [more]
A0A7S3UUT0_HETAK2.240e-2994.23Serine/threonine-protein phosphatase n=2 Tax=Chatt... [more]
A0A7S3GVJ9_9STRA6.840e-2990.38Serine/threonine-protein phosphatase n=2 Tax=cellu... [more]
A0A3P6R9L5_CYLGO1.230e-2884.62SER_THR_PHOSPHATASE domain-containing protein (Fra... [more]
A0A2G9UXN1_TELCI2.260e-2884.62Phosphoprotein phosphatase 1 domain protein n=1 Ta... [more]
A0A6H5JFB0_9PHAE2.470e-2892.31Serine/threonine-protein phosphatase n=1 Tax=Ectoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig176752contigH-elongata_contig176752:1022..1177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue8.5e-25
Seed eggNOG ortholog2880.D7G4T1
Preferred nameGLC7
KEGG koko:K06269
KEGG Pathwayko03015,ko04022,ko04024,ko04113,ko04114,ko04218,ko04261,ko04270,ko04390,ko04510,ko04611,ko04720,ko04728,ko04750,ko04810,ko04910,ko04921,ko04931,ko05031,ko05034,ko05168,ko05205,map03015,map04022,map04024,map04113,map04114,map04218,map04261,map04270,map04390,map04510,map04611,map04720,map04728,map04750,map04810,map04910,map04921,map04931,map05031,map05034,map05168,map05205
GOsGO:0000003,GO:0000022,GO:0000070,GO:0000075,GO:0000076,GO:0000077,GO:0000122,GO:0000164,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000819,GO:0000903,GO:0000910,GO:0001400,GO:0003006,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005815,GO:0005816,GO:0005847,GO:0005849,GO:0005856,GO:0005933,GO:0005935,GO:0005937,GO:0005938,GO:0005975,GO:0005976,GO:0005977,GO:0006073,GO:0006091,GO:0006109,GO:0006112,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006325,GO:0006342,GO:0006351,GO:0006353,GO:0006355,GO:0006357,GO:0006364,GO:0006366,GO:0006369,GO:0006396,GO:0006464,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006950,GO:0006974,GO:0006986,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007080,GO:0007088,GO:0007093,GO:0007094,GO:0007114,GO:0007163,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0008287,GO:0008360,GO:0008608,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010638,GO:0010639,GO:0010948,GO:0010965,GO:0015630,GO:0015980,GO:0016043,GO:0016049,GO:0016070,GO:0016072,GO:0016311,GO:0016458,GO:0016569,GO:0016570,GO:0016576,GO:0016787,GO:0016788,GO:0016791,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019953,GO:0019954,GO:0022402,GO:0022413,GO:0022414,GO:0022603,GO:0022604,GO:0022613,GO:0023052,GO:0030010,GO:0030071,GO:0030139,GO:0030154,GO:0030427,GO:0030428,GO:0030435,GO:0030437,GO:0030846,GO:0030847,GO:0031134,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031399,GO:0031401,GO:0031410,GO:0031570,GO:0031577,GO:0031974,GO:0031981,GO:0031982,GO:0032153,GO:0032268,GO:0032270,GO:0032465,GO:0032467,GO:0032502,GO:0032505,GO:0032774,GO:0032878,GO:0032879,GO:0032880,GO:0032954,GO:0032956,GO:0032970,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033365,GO:0033554,GO:0034293,GO:0034470,GO:0034501,GO:0034502,GO:0034506,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035303,GO:0035304,GO:0035306,GO:0035307,GO:0035838,GO:0035839,GO:0035966,GO:0036211,GO:0040007,GO:0040029,GO:0042221,GO:0042254,GO:0042578,GO:0042592,GO:0042995,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043934,GO:0043935,GO:0044042,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044463,GO:0044464,GO:0044703,GO:0044848,GO:0045005,GO:0045786,GO:0045787,GO:0045814,GO:0045839,GO:0045840,GO:0045841,GO:0045842,GO:0045892,GO:0045930,GO:0045931,GO:0045934,GO:0045937,GO:0046483,GO:0048285,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048646,GO:0048856,GO:0048869,GO:0048878,GO:0050000,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051211,GO:0051231,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051276,GO:0051286,GO:0051301,GO:0051302,GO:0051303,GO:0051310,GO:0051315,GO:0051321,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051784,GO:0051785,GO:0051983,GO:0051984,GO:0051985,GO:0055082,GO:0055114,GO:0060255,GO:0060341,GO:0060623,GO:0061587,GO:0061638,GO:0062033,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070940,GO:0071173,GO:0071174,GO:0071459,GO:0071704,GO:0071840,GO:0071944,GO:0072357,GO:0072690,GO:0080090,GO:0090068,GO:0090231,GO:0090233,GO:0090266,GO:0090304,GO:0097659,GO:0097708,GO:0098687,GO:0098813,GO:0099568,GO:0110020,GO:0120025,GO:0120038,GO:0140014,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901900,GO:1901901,GO:1901970,GO:1901976,GO:1901977,GO:1901987,GO:1901988,GO:1901989,GO:1901990,GO:1901991,GO:1901992,GO:1902099,GO:1902100,GO:1902101,GO:1902340,GO:1902412,GO:1902426,GO:1902494,GO:1902679,GO:1902850,GO:1903046,GO:1903047,GO:1903066,GO:1903068,GO:1903293,GO:1903379,GO:1903436,GO:1903438,GO:1903490,GO:1903499,GO:1903501,GO:1903504,GO:1903506,GO:1903507,GO:1903827,GO:1903829,GO:1905213,GO:1905818,GO:1905819,GO:1905820,GO:1990567,GO:1990758,GO:2000112,GO:2000113,GO:2000114,GO:2000431,GO:2000433,GO:2000769,GO:2000771,GO:2000782,GO:2000784,GO:2000816,GO:2001141,GO:2001251,GO:2001252
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG0639@1,KOG0374@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03019,ko03021,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930022.9478939-CDS-H-elongata_contig176752:1021..11771622930022.9478939-CDS-H-elongata_contig176752:1021..1177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176752 1022..1177 +
1691679250.0676115-CDS-H-elongata_contig176752:1021..11771691679250.0676115-CDS-H-elongata_contig176752:1021..1177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176752 1022..1177 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig176752.4632.1prot_H-elongata_contig176752.4632.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig176752 1022..1177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig176752.4632.1

>prot_H-elongata_contig176752.4632.1 ID=prot_H-elongata_contig176752.4632.1|Name=mRNA_H-elongata_contig176752.4632.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAH
QV
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mRNA from alignment at H-elongata_contig176752:1022..1177+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig176752.4632.1 ID=mRNA_H-elongata_contig176752.4632.1|Name=mRNA_H-elongata_contig176752.4632.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig176752:1022..1177+ (Himanthalia elongata Himel1 dioecious)
GGTCTCCTGTGCGACCTCCTGTGGTCGGATCCAGACCGCGATATAATCGG
CTGGGGTGAGAATGATCGAGGTGTTTCCTTCACCTTTGGTGAGGACATCG
TGGTACAGTTCCTGAGGCGACACGATCTTGACCTCATCTGCCGGGCGCAC
CAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig176752:1022..1177+

>mRNA_H-elongata_contig176752.4632.1 ID=mRNA_H-elongata_contig176752.4632.1|Name=mRNA_H-elongata_contig176752.4632.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig176752:1022..1177+ (Himanthalia elongata Himel1 dioecious)
GGTCTCCTGTGCGACCTCCTGTGGTCGGATCCAGACCGCGATATAATCGG
CTGGGGTGAGAATGATCGAGGTGTTTCCTTCACCTTTGGTGAGGACATCG
TGGTACAGTTCCTGAGGCGACACGATCTTGACCTCATCTGCCGGGCGCAC
CAGGTGGGTCTCCTGTGCGACCTCCTGTGGTCGGATCCAGACCGCGATAT
AATCGGCTGGGGTGAGAATGATCGAGGTGTTTCCTTCACCTTTGGTGAGG
ACATCGTGGTACAGTTCCTGAGGCGACACGATCTTGACCTCATCTGCCGG
GCGCACCAGGTG
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