mRNA_H-elongata_contig176678.4629.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig176678.4629.1
Unique NamemRNA_H-elongata_contig176678.4629.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig176678.4629.1 vs. uniprot
Match: UPI001AA1AADC (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1AADC)

HSP 1 Score: 63.9 bits (154), Expect = 2.510e-10
Identity = 39/112 (34.82%), Postives = 55/112 (49.11%), Query Frame = 1 
Query:    1 RLRSGYIEGAY-RVLEITRCNSIETTLRTKNLGWAGTLFRTSGGQFPKLIAIGNLEGAVRKGRGGKKKDWTDCVQSDIR--------------VFGI-TGDWEAIALKANIW 288
            RLR+ +   +Y + L++TRC SIETT+R + L +AG + R S  + P  +  G + G      GG+ K W  CV  D+R              VFG+ T  W   A KA  W
Sbjct:    6 RLRTDHATLSYAKALKMTRCESIETTIRKRRLFFAGGVARQSKDRLPSRVMFGTIAGGENPRPGGQVKTWHRCVVEDLREFRATEGSTELAPLVFGVETALWPTAAKKAGKW 117
[Close]
BLAST of mRNA_H-elongata_contig176678.4629.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE)

HSP 1 Score: 62.4 bits (150), Expect = 7.820e-10
Identity = 32/84 (38.10%), Postives = 46/84 (54.76%), Query Frame = 1 
Query:    1 RLRSGYIEGAY-RVLEITRCNSIETTLRTKNLGWAGTLFRTSGGQFPKLIAIGNLEGAVRKGRGGKKKDWTDCVQSDIRVFGIT 249
            RLR+ +   +Y + L ITRC SIETT+R + L +AG + R   G+ P  +  G + G      GG+ K W   +  D+RVF  T
Sbjct:   44 RLRTDHTTLSYAKALRITRCESIETTIRKRRLFFAGAVVRQHEGRLPSRLMFGTIAGGGSPKPGGQPKTWPRAIAEDLRVFKAT 127
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176678.4629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001AA1AADC2.510e-1034.82hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
UPI001AA1A1FE7.820e-1038.10hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig176678contigH-elongata_contig176678:891..1184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930022.594666-CDS-H-elongata_contig176678:890..11841622930022.594666-CDS-H-elongata_contig176678:890..1184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176678 891..1184 +
1691679249.9373274-CDS-H-elongata_contig176678:890..11841691679249.9373274-CDS-H-elongata_contig176678:890..1184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176678 891..1184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig176678.4629.1prot_H-elongata_contig176678.4629.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig176678 891..1184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig176678.4629.1

>prot_H-elongata_contig176678.4629.1 ID=prot_H-elongata_contig176678.4629.1|Name=mRNA_H-elongata_contig176678.4629.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
RLRSGYIEGAYRVLEITRCNSIETTLRTKNLGWAGTLFRTSGGQFPKLIA
IGNLEGAVRKGRGGKKKDWTDCVQSDIRVFGITGDWEAIALKANIWGE
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mRNA from alignment at H-elongata_contig176678:891..1184+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig176678.4629.1 ID=mRNA_H-elongata_contig176678.4629.1|Name=mRNA_H-elongata_contig176678.4629.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at H-elongata_contig176678:891..1184+ (Himanthalia elongata Himel1 dioecious)
AGATTGCGGTCGGGGTACATTGAGGGGGCCTACCGTGTCCTTGAGATAAC
CCGGTGCAATAGCATTGAGACAACGTTGCGCACGAAAAACCTTGGGTGGG
CGGGAACGCTCTTCCGTACGAGCGGCGGGCAGTTTCCAAAGCTAATCGCT
ATCGGAAACCTTGAGGGTGCAGTACGGAAAGGACGGGGTGGGAAGAAGAA
AGATTGGACTGACTGTGTACAGAGTGATATCCGGGTGTTTGGCATTACGG
GGGACTGGGAAGCAATTGCGTTGAAGGCTAACATTTGGGGTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig176678:891..1184+

>mRNA_H-elongata_contig176678.4629.1 ID=mRNA_H-elongata_contig176678.4629.1|Name=mRNA_H-elongata_contig176678.4629.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig176678:891..1184+ (Himanthalia elongata Himel1 dioecious)
AGATTGCGGTCGGGGTACATTGAGGGGGCCTACCGTGTCCTTGAGATAAC
CCGGTGCAATAGCATTGAGACAACGTTGCGCACGAAAAACCTTGGGTGGG
CGGGAACGCTCTTCCGTACGAGCGGCGGGCAGTTTCCAAAGCTAATCGCT
ATCGGAAACCTTGAGGGTGCAGTACGGAAAGGACGGGGTGGGAAGAAGAA
AGATTGGACTGACTGTGTACAGAGTGATATCCGGGTGTTTGGCATTACGG
GGGACTGGGAAGCAATTGCGTTGAAGGCTAACATTTGGGGTGAGAGATTG
CGGTCGGGGTACATTGAGGGGGCCTACCGTGTCCTTGAGATAACCCGGTG
CAATAGCATTGAGACAACGTTGCGCACGAAAAACCTTGGGTGGGCGGGAA
CGCTCTTCCGTACGAGCGGCGGGCAGTTTCCAAAGCTAATCGCTATCGGA
AACCTTGAGGGTGCAGTACGGAAAGGACGGGGTGGGAAGAAGAAAGATTG
GACTGACTGTGTACAGAGTGATATCCGGGTGTTTGGCATTACGGGGGACT
GGGAAGCAATTGCGTTGAAGGCTAACATTTGGGGTGAG
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