mRNA_H-elongata_contig176673.4628.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig176673.4628.1
Unique NamemRNA_H-elongata_contig176673.4628.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig176673.4628.1 vs. uniprot
Match: A0A6S7K883_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K883_PARCT)

HSP 1 Score: 76.3 bits (186), Expect = 8.270e-14
Identity = 35/107 (32.71%), Postives = 60/107 (56.07%), Query Frame = 1
Query:   16 EVLFRTDCECIEAAVMKRILHYAGRVARMHDDRIPNIVIRGEMVGGKRKRGQPAKRFEHRVTEYCTAVGIDPKCWMRAAQDAPEWHSKVETGAEVFMSAWSTKRVNE 336
            EVL R  C  +E+ + KR L +AG + RM D+R+P I++ GE+  G R  G+P KR++  + +   +  +  + W   A+D   W + + TG + F  A  T+R+ +
Sbjct:  278 EVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASWRTAIHTGVQSF-EAGRTERIRQ 383          
BLAST of mRNA_H-elongata_contig176673.4628.1 vs. uniprot
Match: A0A7D9M5G6_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M5G6_PARCT)

HSP 1 Score: 76.3 bits (186), Expect = 9.600e-14
Identity = 35/107 (32.71%), Postives = 60/107 (56.07%), Query Frame = 1
Query:   16 EVLFRTDCECIEAAVMKRILHYAGRVARMHDDRIPNIVIRGEMVGGKRKRGQPAKRFEHRVTEYCTAVGIDPKCWMRAAQDAPEWHSKVETGAEVFMSAWSTKRVNE 336
            EVL R  C  +E+ + KR L +AG + RM D+R+P I++ GE+  G R  G+P KR++  + +   +  +  + W   A+D   W + + TG + F  A  T+R+ +
Sbjct:  564 EVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASWRTAIHTGVQSF-EAGRTERIRQ 669          
BLAST of mRNA_H-elongata_contig176673.4628.1 vs. uniprot
Match: A0A8C5PP25_9ANUR (Reverse transcriptase domain-containing protein n=10 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PP25_9ANUR)

HSP 1 Score: 74.3 bits (181), Expect = 4.650e-13
Identity = 36/99 (36.36%), Postives = 57/99 (57.58%), Query Frame = 1
Query:   16 EVLFRTDCECIEAAVMKRILHYAGRVARMHDDRIPNIVIRGEMVGGKRKRGQPAKRFEHRVTEYCTAVGIDPKCWMRAAQDAPEWHSKVETGAEVFMSA 312
            EVL R D   I   + +  L +AG VARM D+R+P +++ GE+  GKR +G   KR++  +     A  I+P  W  AAQD  +W S ++ GA+ + ++
Sbjct:  816 EVLVRADLPSIFTILAQSQLRWAGHVARMKDNRLPKMLLFGELTQGKRSQGGQKKRYKDTLKAALKAFNINPINWELAAQDKIKWRSAIKNGAQSYETS 914          
BLAST of mRNA_H-elongata_contig176673.4628.1 vs. uniprot
Match: A0A6S7JKI9_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JKI9_PARCT)

HSP 1 Score: 72.8 bits (177), Expect = 8.430e-13
Identity = 31/96 (32.29%), Postives = 53/96 (55.21%), Query Frame = 1
Query:   16 EVLFRTDCECIEAAVMKRILHYAGRVARMHDDRIPNIVIRGEMVGGKRKRGQPAKRFEHRVTEYCTAVGIDPKCWMRAAQDAPEWHSKVETGAEVF 303
            EVL R  C  +E+ + KR L +AG + RM D+R+P I++ GE+  G R  G+P KR++  + +   +  +  + W   A+D   W + + TG  + 
Sbjct:  211 EVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASWRTAIHTGGSMI 306          
BLAST of mRNA_H-elongata_contig176673.4628.1 vs. uniprot
Match: A0A8J9Z756_BRALA (Hypp8133 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9Z756_BRALA)

HSP 1 Score: 70.1 bits (170), Expect = 4.240e-12
Identity = 36/115 (31.30%), Postives = 57/115 (49.57%), Query Frame = 1
Query:   16 EVLFRTDCECIEAAVMKRILHYAGRVARMHDDRIPNIVIRGEMVGGKRKRGQPAKRFEHRVTEYCTAVGIDPKCWMRAAQDAPEWHSKVETGAEVFMSAWSTKRVNETNARHARE 360
            EVL R +   +   + K    +AG V RM D RIP +++ GE+  GKR  G+P  R++  +     ++ I    W   A D P+W   V  GA++  +  ST   ++  AR  R+
Sbjct:   93 EVLTRANMLSVHTLLEKARARWAGHVRRMDDQRIPKVLLYGELAVGKRPLGRPKLRYKDNLKATLKSLSIPMDSWEVIAADRPQWRGAVHQGAQLAETRRSTLAASKREARKVRD 207          
BLAST of mRNA_H-elongata_contig176673.4628.1 vs. uniprot
Match: A0A8J9ZFI4_BRALA (Hypp998 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZFI4_BRALA)

HSP 1 Score: 57.0 bits (136), Expect = 5.410e-8
Identity = 27/87 (31.03%), Postives = 44/87 (50.57%), Query Frame = 1
Query:  100 MHDDRIPNIVIRGEMVGGKRKRGQPAKRFEHRVTEYCTAVGIDPKCWMRAAQDAPEWHSKVETGAEVFMSAWSTKRVNETNARHARE 360
            M D RIP +++ GE+  GKR  G+P  R++  +     ++ I    W   A D P+W   V  GA++  +  ST   ++  AR  R+
Sbjct:    1 MDDQRIPKVLLYGELAVGKRPLGRPKLRYKDNLKATLKSLSIPVDSWEVIAADRPQWRGAVHQGAQLAETRRSTLAASKREARKVRD 87          
BLAST of mRNA_H-elongata_contig176673.4628.1 vs. uniprot
Match: A0A8J9YSJ6_BRALA (Hypp5883 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9YSJ6_BRALA)

HSP 1 Score: 55.8 bits (133), Expect = 1.540e-7
Identity = 29/87 (33.33%), Postives = 41/87 (47.13%), Query Frame = 1
Query:  100 MHDDRIPNIVIRGEMVGGKRKRGQPAKRFEHRVTEYCTAVGIDPKCWMRAAQDAPEWHSKVETGAEVFMSAWSTKRVNETNARHARE 360
            MHD RIP I++ GE+   KR  G+P  R+     E   ++ I  + W   A D  +W   V  G  +  +  ST    +  AR ARE
Sbjct:    1 MHDQRIPKILLYGELAEEKRPSGRPKLRYNDNFKETLKSLSIPVENWEDIAPDRLQWRGAVHQGERLAETRRSTLAATKREARKARE 87          
BLAST of mRNA_H-elongata_contig176673.4628.1 vs. uniprot
Match: A0A6S7JBE9_PARCT (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JBE9_PARCT)

HSP 1 Score: 57.0 bits (136), Expect = 4.990e-7
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 1
Query:   16 EVLFRTDCECIEAAVMKRILHYAGRVARMHDDRIPNIVIRGEMVGGKRKRGQPAKRFEH 192
            EVL R  C  IE+ + KR L +AG + RM D+R+P I++ GE+  G R  G+P KR  H
Sbjct:  294 EVLERAKCCSIESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRTSH 352          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176673.4628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6S7K883_PARCT8.270e-1432.71RNA-directed DNA polymerase from mobile element jo... [more]
A0A7D9M5G6_PARCT9.600e-1432.71RNA-directed DNA polymerase from mobile element jo... [more]
A0A8C5PP25_9ANUR4.650e-1336.36Reverse transcriptase domain-containing protein n=... [more]
A0A6S7JKI9_PARCT8.430e-1332.29Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A8J9Z756_BRALA4.240e-1231.30Hypp8133 protein n=1 Tax=Branchiostoma lanceolatum... [more]
A0A8J9ZFI4_BRALA5.410e-831.03Hypp998 protein n=1 Tax=Branchiostoma lanceolatum ... [more]
A0A8J9YSJ6_BRALA1.540e-733.33Hypp5883 protein n=1 Tax=Branchiostoma lanceolatum... [more]
A0A6S7JBE9_PARCT4.990e-745.76Reverse transcriptase domain-containing protein (F... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig176673contigH-elongata_contig176673:178..537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score69.7
Seed ortholog evalue1e-09
Seed eggNOG ortholog7739.XP_002599408.1
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,48EZY@7711,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelChordata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size360
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930022.5534632-CDS-H-elongata_contig176673:177..5371622930022.5534632-CDS-H-elongata_contig176673:177..537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176673 178..537 +
1691679249.9275558-CDS-H-elongata_contig176673:177..5371691679249.9275558-CDS-H-elongata_contig176673:177..537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176673 178..537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig176673.4628.1prot_H-elongata_contig176673.4628.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig176673 178..537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig176673.4628.1

>prot_H-elongata_contig176673.4628.1 ID=prot_H-elongata_contig176673.4628.1|Name=mRNA_H-elongata_contig176673.4628.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MLSYLEVLFRTDCECIEAAVMKRILHYAGRVARMHDDRIPNIVIRGEMVG
GKRKRGQPAKRFEHRVTEYCTAVGIDPKCWMRAAQDAPEWHSKVETGAEV
FMSAWSTKRVNETNARHARE
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mRNA from alignment at H-elongata_contig176673:178..537+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig176673.4628.1 ID=mRNA_H-elongata_contig176673.4628.1|Name=mRNA_H-elongata_contig176673.4628.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=360bp|location=Sequence derived from alignment at H-elongata_contig176673:178..537+ (Himanthalia elongata Himel1 dioecious)
ATGCTCTCATACCTCGAGGTCCTTTTCAGGACTGACTGTGAGTGCATTGA GGCGGCTGTGATGAAGCGCATTCTCCACTACGCAGGCCGCGTCGCGCGCA TGCACGACGATCGTATTCCCAACATCGTCATACGTGGCGAAATGGTCGGA GGGAAGAGAAAACGGGGCCAGCCTGCAAAACGCTTCGAACACCGCGTCAC GGAATACTGCACTGCCGTCGGGATCGACCCCAAGTGTTGGATGCGGGCCG CCCAAGATGCACCTGAGTGGCACAGTAAAGTAGAGACGGGAGCTGAAGTC TTCATGTCGGCCTGGTCCACCAAGCGTGTGAACGAGACCAACGCCCGCCA CGCACGGGAA
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Coding sequence (CDS) from alignment at H-elongata_contig176673:178..537+

>mRNA_H-elongata_contig176673.4628.1 ID=mRNA_H-elongata_contig176673.4628.1|Name=mRNA_H-elongata_contig176673.4628.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig176673:178..537+ (Himanthalia elongata Himel1 dioecious)
ATGCTCTCATACCTCGAGGTCCTTTTCAGGACTGACTGTGAGTGCATTGA
GGCGGCTGTGATGAAGCGCATTCTCCACTACGCAGGCCGCGTCGCGCGCA
TGCACGACGATCGTATTCCCAACATCGTCATACGTGGCGAAATGGTCGGA
GGGAAGAGAAAACGGGGCCAGCCTGCAAAACGCTTCGAACACCGCGTCAC
GGAATACTGCACTGCCGTCGGGATCGACCCCAAGTGTTGGATGCGGGCCG
CCCAAGATGCACCTGAGTGGCACAGTAAAGTAGAGACGGGAGCTGAAGTC
TTCATGTCGGCCTGGTCCACCAAGCGTGTGAACGAGACCAACGCCCGCCA
CGCACGGGAAATGCTCTCATACCTCGAGGTCCTTTTCAGGACTGACTGTG
AGTGCATTGAGGCGGCTGTGATGAAGCGCATTCTCCACTACGCAGGCCGC
GTCGCGCGCATGCACGACGATCGTATTCCCAACATCGTCATACGTGGCGA
AATGGTCGGAGGGAAGAGAAAACGGGGCCAGCCTGCAAAACGCTTCGAAC
ACCGCGTCACGGAATACTGCACTGCCGTCGGGATCGACCCCAAGTGTTGG
ATGCGGGCCGCCCAAGATGCACCTGAGTGGCACAGTAAAGTAGAGACGGG
AGCTGAAGTCTTCATGTCGGCCTGGTCCACCAAGCGTGTGAACGAGACCA
ACGCCCGCCACGCACGGGAA
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