mRNA_H-elongata_contig17665.4627.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17665.4627.1
Unique NamemRNA_H-elongata_contig17665.4627.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17665.4627.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 4.740e-39
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 1
Query:    1 DPLDWWRVWCTDFPHLANLARRVLAIPATQAESERLFSCAGNIITKNRNNLAPTTVELLVLLRHSWKV 204
            DPLDWWRV C DFPHLANLARRVLAIPATQAESERLFSCAGNI+TKNRNNLAPTTVELLVLLRHSWK+
Sbjct:  222 DPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKI 289          
BLAST of mRNA_H-elongata_contig17665.4627.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 2.500e-31
Identity = 55/58 (94.83%), Postives = 58/58 (100.00%), Query Frame = 1
Query:   31 TDFPHLANLARRVLAIPATQAESERLFSCAGNIITKNRNNLAPTTVELLVLLRHSWKV 204
            TDFPHLANLARRVLAIPATQA+SERLFSCAGNI+TKNRNNLAPTTVELLVLLRHSWK+
Sbjct:  152 TDFPHLANLARRVLAIPATQAKSERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKI 209          
BLAST of mRNA_H-elongata_contig17665.4627.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.740e-15
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    4 PLDWWRVWCTDFPHLANLARRVLAIPATQAESERLFSCAGNIITKNRNNLAPTTVELLVLLRHS 195
            PL+WWRV   ++P LA+LARRVL IPA QA+SER+FS AG ++TK R  + P  V L+V LR++
Sbjct:  480 PLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRNT 543          
BLAST of mRNA_H-elongata_contig17665.4627.1 vs. uniprot
Match: UPI0011C102C8 (zinc finger BED domain-containing protein 1-like n=1 Tax=Sparus aurata TaxID=8175 RepID=UPI0011C102C8)

HSP 1 Score: 76.3 bits (186), Expect = 5.230e-15
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 DPLDWWRVWCTDFPHLANLARRVLAIPATQAESERLFSCAGNIITKNRNNLAPTTVELLVLLRHS 195
            +PL+WWR+  T+FP LANLA++ + IPAT A SER FS  GNI+T +R+ L P TV+ LV L ++
Sbjct:  220 NPLEWWRLHQTNFPRLANLAKKYICIPATSAPSERAFSTGGNIVTCHRSALKPETVDKLVFLANN 284          
BLAST of mRNA_H-elongata_contig17665.4627.1 vs. uniprot
Match: A0A1X7SR93_AMPQE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SR93_AMPQE)

HSP 1 Score: 72.8 bits (177), Expect = 8.390e-15
Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    1 DPLDWWRVWCTDFPHLANLARRVLAIPATQAESERLFSCAGNIITKNRNNLAPTTVELLVLL 186
            D  +WWR     FPHL+++AR++L IPAT   SER+FS AG I+TK R NL P  V++LV L
Sbjct:   67 DVFEWWRKNQEMFPHLSDIARKLLCIPATSVPSERIFSVAGGIVTKKRTNLKPENVDMLVFL 128          
BLAST of mRNA_H-elongata_contig17665.4627.1 vs. uniprot
Match: UPI001C19DB61 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C19DB61)

HSP 1 Score: 74.3 bits (181), Expect = 1.840e-14
Identity = 34/65 (52.31%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    4 PLDWWRVWCTDFPHLANLARRVLAIPATQAESERLFSCAGNIITKNRNNLAPTTVELLVLLRHSW 198
            P  WW    + FP L+ LA++ LAIPAT A SERLFS AGN++T  R NL+PTT E L+  + +W
Sbjct:  178 PFKWWASQESQFPILSQLAKKYLAIPATSAASERLFSDAGNVMTVKRTNLSPTTFEHLIFCKRNW 242          
BLAST of mRNA_H-elongata_contig17665.4627.1 vs. uniprot
Match: UPI001C164491 (Hypothetical protein n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C164491)

HSP 1 Score: 73.6 bits (179), Expect = 4.130e-14
Identity = 34/65 (52.31%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    4 PLDWWRVWCTDFPHLANLARRVLAIPATQAESERLFSCAGNIITKNRNNLAPTTVELLVLLRHSW 198
            P  WW    + FP L+ LA++ LAIPAT A SERLFS AGN++T  R NL+PTT E L+  + +W
Sbjct:  189 PFKWWASQESRFPILSQLAKKYLAIPATSAASERLFSDAGNVMTVKRTNLSPTTFEHLIFCKRNW 253          
BLAST of mRNA_H-elongata_contig17665.4627.1 vs. uniprot
Match: UPI001C1CE2AD (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C1CE2AD)

HSP 1 Score: 72.4 bits (176), Expect = 8.040e-14
Identity = 31/65 (47.69%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    7 LDWWRVWCTDFPHLANLARRVLAIPATQAESERLFSCAGNIITKNRNNLAPTTVELLVLLRHSWK 201
            L WW++   ++PHLAN+A+  L +PAT A SER+FS A N+IT +R +LAP TV  ++ L+H ++
Sbjct:  167 LKWWKLHEEEYPHLANMAKDYLGVPATSASSERIFSSAANVITYDRASLAPETVRSVMYLKHWYR 231          
BLAST of mRNA_H-elongata_contig17665.4627.1 vs. uniprot
Match: A0A669CH32_ORENI (BED-type domain-containing protein n=4 Tax=Ovalentaria TaxID=1489908 RepID=A0A669CH32_ORENI)

HSP 1 Score: 73.6 bits (179), Expect = 1.150e-13
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 DPLDWWRVWCTDFPHLANLARRVLAIPATQAESERLFSCAGNIITKNRNNLAPTTVELLVLL 186
            DPL WW+   T FP LANLA+  LA+PAT   SERLFS AGNI+TK R +L    VE+L  L
Sbjct:  562 DPLTWWKNNATRFPTLANLAKSYLAVPATSTPSERLFSVAGNIVTKKRASLTAEHVEMLTFL 623          
BLAST of mRNA_H-elongata_contig17665.4627.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.560e-13
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    1 DPLDWWRVWCTDFPHLANLARRVLAIPATQAESERLFSCAGNIITKNRNNLAPTTVELLVLLRHSWKV 204
            +PLD WR    ++P LA LARRVLAIP++QA+SER+FS AG  +T  R+ L    VELLV LR+ W V
Sbjct:  482 NPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNVWGV 549          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17665.4627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWI1_9PHAE4.740e-3994.12Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JPB0_9PHAE2.500e-3194.83Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE3.740e-1556.25Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
UPI0011C102C85.230e-1553.85zinc finger BED domain-containing protein 1-like n... [more]
A0A1X7SR93_AMPQE8.390e-1553.23Dimer_Tnp_hAT domain-containing protein n=1 Tax=Am... [more]
UPI001C19DB611.840e-1452.31Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
UPI001C1644914.130e-1452.31Hypothetical protein n=2 Tax=Rhizophagus irregular... [more]
UPI001C1CE2AD8.040e-1447.69Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
A0A669CH32_ORENI1.150e-1358.06BED-type domain-containing protein n=4 Tax=Ovalent... [more]
D8LCS5_ECTSI1.560e-1355.88Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17665contigH-elongata_contig17665:1283..1486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue7.5e-13
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930022.4598439-CDS-H-elongata_contig17665:1282..14861622930022.4598439-CDS-H-elongata_contig17665:1282..1486Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17665 1283..1486 +
1691679249.9119618-CDS-H-elongata_contig17665:1282..14861691679249.9119618-CDS-H-elongata_contig17665:1282..1486Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17665 1283..1486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17665.4627.1prot_H-elongata_contig17665.4627.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17665 1283..1486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17665.4627.1

>prot_H-elongata_contig17665.4627.1 ID=prot_H-elongata_contig17665.4627.1|Name=mRNA_H-elongata_contig17665.4627.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
DPLDWWRVWCTDFPHLANLARRVLAIPATQAESERLFSCAGNIITKNRNN
LAPTTVELLVLLRHSWKV
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mRNA from alignment at H-elongata_contig17665:1283..1486+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17665.4627.1 ID=mRNA_H-elongata_contig17665.4627.1|Name=mRNA_H-elongata_contig17665.4627.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig17665:1283..1486+ (Himanthalia elongata Himel1 dioecious)
GACCCCTTGGACTGGTGGCGGGTATGGTGCACAGACTTCCCACACTTGGC CAACCTCGCCCGCCGTGTGCTGGCGATCCCCGCCACTCAGGCAGAGTCCG AGCGTCTGTTCTCCTGCGCTGGAAACATCATCACAAAGAATCGCAACAAC TTGGCCCCCACCACCGTGGAGCTGCTCGTCCTCCTGCGCCACTCGTGGAA GGTA
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Coding sequence (CDS) from alignment at H-elongata_contig17665:1283..1486+

>mRNA_H-elongata_contig17665.4627.1 ID=mRNA_H-elongata_contig17665.4627.1|Name=mRNA_H-elongata_contig17665.4627.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig17665:1283..1486+ (Himanthalia elongata Himel1 dioecious)
GACCCCTTGGACTGGTGGCGGGTATGGTGCACAGACTTCCCACACTTGGC
CAACCTCGCCCGCCGTGTGCTGGCGATCCCCGCCACTCAGGCAGAGTCCG
AGCGTCTGTTCTCCTGCGCTGGAAACATCATCACAAAGAATCGCAACAAC
TTGGCCCCCACCACCGTGGAGCTGCTCGTCCTCCTGCGCCACTCGTGGAA
GGTAGACCCCTTGGACTGGTGGCGGGTATGGTGCACAGACTTCCCACACT
TGGCCAACCTCGCCCGCCGTGTGCTGGCGATCCCCGCCACTCAGGCAGAG
TCCGAGCGTCTGTTCTCCTGCGCTGGAAACATCATCACAAAGAATCGCAA
CAACTTGGCCCCCACCACCGTGGAGCTGCTCGTCCTCCTGCGCCACTCGT
GGAAGGTA
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