mRNA_H-elongata_contig17662.4625.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 107 bits (267), Expect = 2.610e-24 Identity = 61/150 (40.67%), Postives = 90/150 (60.00%), Query Frame = 1
Query: 1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGLK--IGVIPTDGRGEWHG-QFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWN 420
+F+DL G S+GG + M+ DDF+R ICFL+ KSDA +A R + + + G+ + ++ +D GE+ G +F S +L IK+E TP+Y+PQYNGV ER LGL+ + +A L V K+D+LWAEAM +AC+ N
Sbjct: 248 VFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLAS-VRANGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMN 396
BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE) HSP 1 Score: 106 bits (265), Expect = 4.460e-24 Identity = 60/147 (40.82%), Postives = 84/147 (57.14%), Query Frame = 1
Query: 1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGL--KIGVIPTDGRGEWHGQFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVALLRGVMEGKSDR-----LWAEAMAYACDMWN 420
+++DL G S+GGN + ++ DDFSR+ + FLK KSDA K + DY T +G+ ++ + TDG GE+ GQF R+ IK E TP + P+YNGV ERALGL+ D +A + D LWAEA++ AC N
Sbjct: 24 VYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRT-KGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLN 169
BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE) HSP 1 Score: 104 bits (259), Expect = 3.030e-23 Identity = 61/150 (40.67%), Postives = 89/150 (59.33%), Query Frame = 1
Query: 1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGLK--IGVIPTDGRGEWHG-QFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWN 420
+F+DL G S+GG + M+ DDF+R + FLK KSDA +A R + + ++G+ + ++ +D GE+ G +F S +L IK+E TP+Y+PQYNGV ER LGL+ +A L V K+DRLWAEAM +AC+ N
Sbjct: 633 VFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLAS-VRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAIN 781
BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 102 bits (255), Expect = 3.870e-23 Identity = 60/146 (41.10%), Postives = 80/146 (54.79%), Query Frame = 1
Query: 1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSE-GLKIGVIPTDGRGEWHGQFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVALLRGVMEGKSDR-----LWAEAMAYACDMWN 420
LF++L G S+GGN + ++ DD +R+ + FLK KSDA A + + DY ++ V TDG GE+ GQF R+ IK+E TP P+YNGV ERALGLL D +A E D LWAEA++ AC N
Sbjct: 197 LFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMN 342
BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE) HSP 1 Score: 103 bits (256), Expect = 7.670e-23 Identity = 59/150 (39.33%), Postives = 89/150 (59.33%), Query Frame = 1
Query: 1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGLK--IGVIPTDGRGEWHG-QFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWN 420
+F+DL G S+GG + M+ DDF+R + FL+ KSDA +A R + + + G+ + ++ +D GE+ G +F S +L IK+E TP+Y+PQYNGV ER LGL+ + +A L V K+D+LWAEAM +AC+ N
Sbjct: 193 VFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLAS-VRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMN 341
BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE) HSP 1 Score: 103 bits (256), Expect = 7.910e-23 Identity = 60/150 (40.00%), Postives = 89/150 (59.33%), Query Frame = 1
Query: 1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGLK--IGVIPTDGRGEWHG-QFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWN 420
+F+DL G S+GG + M+ DDF+R + FLK KSDA A R + + ++G+ + ++ +D GE+ G +F S +L IK+E TP+Y+PQYNGV ER LGL+ + +A L V K+D+LWAEAM +AC+ N
Sbjct: 237 VFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLAS-VRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMN 385
BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 103 bits (256), Expect = 7.950e-23 Identity = 60/150 (40.00%), Postives = 89/150 (59.33%), Query Frame = 1
Query: 1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGLK--IGVIPTDGRGEWHG-QFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWN 420
+F+DL G S+GG + M+ DDF+R + FLK KSDA A R + + ++G+ + ++ +D GE+ G +F S +L IK+E TP+Y+PQYNGV ER LGL+ + +A L V K+D+LWAEAM +AC+ N
Sbjct: 434 VFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLAS-VRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMN 582
BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE) HSP 1 Score: 102 bits (255), Expect = 1.080e-22 Identity = 59/147 (40.14%), Postives = 82/147 (55.78%), Query Frame = 1
Query: 1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGLKIG--VIPTDGRGEWHGQFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVALLRGVMEGKSDR-----LWAEAMAYACDMWN 420
+++DL G S+GGN + ++ DDFSR+ + FLK KSDA K + DY T+ G+ + DG GE+ GQF R+ IK+E TP + P+YNGV ERALGL+ D +A + D LWAEA++ AC N
Sbjct: 703 VYLDLEGTMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTN-GVPCEDFIARADGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLN 848
BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE) HSP 1 Score: 100 bits (250), Expect = 5.070e-22 Identity = 58/150 (38.67%), Postives = 91/150 (60.67%), Query Frame = 1
Query: 1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGLK--IGVIPTDGRGEWHG-QFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWN 420
+F+DL G S+GG + M+ DDF+R + FL+ KSDA +A R + + + ++G+ I ++ +D GE+ G +F S +L IK+E TP+++P++NGV ER LGL+ + +A L V K+DRLWAEAM +AC+ N
Sbjct: 478 VFVDLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLAN-VRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALN 626
BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 1.500e-21 Identity = 58/149 (38.93%), Postives = 85/149 (57.05%), Query Frame = 1
Query: 1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGLK-IGVIPTDGRGEWHG-QFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWN 420
+F+DL G S+GG + M+ DDF+R + FLK +SDA A R + + + ++ +D GE+ G +F S +L IK+E TP+Y+PQYNGV ER LGL+ + +A L V K+D+LWAEAM +AC+ N
Sbjct: 315 VFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMN 463 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17662.4625.1 >prot_H-elongata_contig17662.4625.1 ID=prot_H-elongata_contig17662.4625.1|Name=mRNA_H-elongata_contig17662.4625.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLIback to top mRNA from alignment at H-elongata_contig17662:4..426- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17662.4625.1 ID=mRNA_H-elongata_contig17662.4625.1|Name=mRNA_H-elongata_contig17662.4625.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=423bp|location=Sequence derived from alignment at H-elongata_contig17662:4..426- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17662:4..426- >mRNA_H-elongata_contig17662.4625.1 ID=mRNA_H-elongata_contig17662.4625.1|Name=mRNA_H-elongata_contig17662.4625.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig17662:4..426- (Himanthalia elongata Himel1 dioecious)back to top |