mRNA_H-elongata_contig17662.4625.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17662.4625.1
Unique NamemRNA_H-elongata_contig17662.4625.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 2.610e-24
Identity = 61/150 (40.67%), Postives = 90/150 (60.00%), Query Frame = 1
Query:    1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGLK--IGVIPTDGRGEWHG-QFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWN 420
            +F+DL G     S+GG  + M+  DDF+R   ICFL+ KSDA +A R  +   + + G+   + ++ +D  GE+ G +F S   +L IK+E TP+Y+PQYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N
Sbjct:  248 VFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLAS-VRANGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMN 396          
BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 4.460e-24
Identity = 60/147 (40.82%), Postives = 84/147 (57.14%), Query Frame = 1
Query:    1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGL--KIGVIPTDGRGEWHGQFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVALLRGVMEGKSDR-----LWAEAMAYACDMWN 420
            +++DL G     S+GGN + ++  DDFSR+  + FLK KSDA     K + DY T +G+  ++ +  TDG GE+ GQF    R+  IK E TP + P+YNGV ERALGL+ D  +A      +   D      LWAEA++ AC   N
Sbjct:   24 VYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRT-KGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLN 169          
BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 3.030e-23
Identity = 61/150 (40.67%), Postives = 89/150 (59.33%), Query Frame = 1
Query:    1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGLK--IGVIPTDGRGEWHG-QFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWN 420
            +F+DL G     S+GG  + M+  DDF+R   + FLK KSDA +A R  +   + ++G+   + ++ +D  GE+ G +F S   +L IK+E TP+Y+PQYNGV ER LGL+    +A       L   V   K+DRLWAEAM +AC+  N
Sbjct:  633 VFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLAS-VRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAIN 781          
BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 3.870e-23
Identity = 60/146 (41.10%), Postives = 80/146 (54.79%), Query Frame = 1
Query:    1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSE-GLKIGVIPTDGRGEWHGQFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVALLRGVMEGKSDR-----LWAEAMAYACDMWN 420
            LF++L G     S+GGN + ++  DD +R+  + FLK KSDA  A  + + DY       ++ V  TDG GE+ GQF    R+  IK+E TP   P+YNGV ERALGLL D  +A      E   D      LWAEA++ AC   N
Sbjct:  197 LFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMN 342          
BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 7.670e-23
Identity = 59/150 (39.33%), Postives = 89/150 (59.33%), Query Frame = 1
Query:    1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGLK--IGVIPTDGRGEWHG-QFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWN 420
            +F+DL G     S+GG  + M+  DDF+R   + FL+ KSDA +A R  +   + + G+   + ++ +D  GE+ G +F S   +L IK+E TP+Y+PQYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N
Sbjct:  193 VFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLAS-VRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMN 341          
BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 7.910e-23
Identity = 60/150 (40.00%), Postives = 89/150 (59.33%), Query Frame = 1
Query:    1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGLK--IGVIPTDGRGEWHG-QFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWN 420
            +F+DL G     S+GG  + M+  DDF+R   + FLK KSDA  A R  +   + ++G+   + ++ +D  GE+ G +F S   +L IK+E TP+Y+PQYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N
Sbjct:  237 VFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLAS-VRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMN 385          
BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 7.950e-23
Identity = 60/150 (40.00%), Postives = 89/150 (59.33%), Query Frame = 1
Query:    1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGLK--IGVIPTDGRGEWHG-QFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWN 420
            +F+DL G     S+GG  + M+  DDF+R   + FLK KSDA  A R  +   + ++G+   + ++ +D  GE+ G +F S   +L IK+E TP+Y+PQYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N
Sbjct:  434 VFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLAS-VRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMN 582          
BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.080e-22
Identity = 59/147 (40.14%), Postives = 82/147 (55.78%), Query Frame = 1
Query:    1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGLKIG--VIPTDGRGEWHGQFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVALLRGVMEGKSDR-----LWAEAMAYACDMWN 420
            +++DL G     S+GGN + ++  DDFSR+  + FLK KSDA     K + DY T+ G+     +   DG GE+ GQF    R+  IK+E TP + P+YNGV ERALGL+ D  +A      +   D      LWAEA++ AC   N
Sbjct:  703 VYLDLEGTMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTN-GVPCEDFIARADGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLN 848          
BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 5.070e-22
Identity = 58/150 (38.67%), Postives = 91/150 (60.67%), Query Frame = 1
Query:    1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGLK--IGVIPTDGRGEWHG-QFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWN 420
            +F+DL G     S+GG  + M+  DDF+R   + FL+ KSDA +A R  + + + ++G+   I ++ +D  GE+ G +F S   +L IK+E TP+++P++NGV ER LGL+ +  +A       L   V   K+DRLWAEAM +AC+  N
Sbjct:  478 VFVDLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLAN-VRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALN 626          
BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.500e-21
Identity = 58/149 (38.93%), Postives = 85/149 (57.05%), Query Frame = 1
Query:    1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGLK-IGVIPTDGRGEWHG-QFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWN 420
            +F+DL G     S+GG  + M+  DDF+R   + FLK +SDA  A R  +     +     + ++ +D  GE+ G +F S   +L IK+E TP+Y+PQYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N
Sbjct:  315 VFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMN 463          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRL9_9PHAE2.610e-2440.67Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KAM7_9PHAE4.460e-2440.82Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2M6_9PHAE3.030e-2340.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LL52_9PHAE3.870e-2341.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L3Y0_9PHAE7.670e-2339.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JBA7_9PHAE7.910e-2340.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE7.950e-2340.00Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAQ2_9PHAE1.080e-2240.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K622_9PHAE5.070e-2238.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV76_9PHAE1.500e-2138.93Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17662contigH-elongata_contig17662:4..426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score85.9
Seed ortholog evalue1.7e-14
Seed eggNOG ortholog4530.OS08T0125300-01
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37THH@33090,3GG2K@35493,3IIIB@38820,3M5VU@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930022.3556666-CDS-H-elongata_contig17662:3..4261622930022.3556666-CDS-H-elongata_contig17662:3..426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17662 4..426 -
1691679249.8767707-CDS-H-elongata_contig17662:3..4261691679249.8767707-CDS-H-elongata_contig17662:3..426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17662 4..426 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17662.4625.1prot_H-elongata_contig17662.4625.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17662 4..426 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17662.4625.1

>prot_H-elongata_contig17662.4625.1 ID=prot_H-elongata_contig17662.4625.1|Name=mRNA_H-elongata_contig17662.4625.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLI
NDYLTSEGLKIGVIPTDGRGEWHGQFLSFLRKLEIKRESTPSYAPQYNGV
VERALGLLRDKTVALLRGVMEGKSDRLWAEAMAYACDMWNR
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mRNA from alignment at H-elongata_contig17662:4..426-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17662.4625.1 ID=mRNA_H-elongata_contig17662.4625.1|Name=mRNA_H-elongata_contig17662.4625.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=423bp|location=Sequence derived from alignment at H-elongata_contig17662:4..426- (Himanthalia elongata Himel1 dioecious)
CTGTTTATTGATCTCTCAGGCCCCTTTCACGACATGTCTCTCGGAGGAAA CAGATTCGTCATGCTGTGCATTGACGACTTCTCCCGCTTCAAAATGATCT GTTTCCTCAAGCAAAAGAGCGACGCCACGAATGCGTTAAGGAAACTAATC AACGACTACTTAACGTCCGAGGGCCTCAAGATTGGCGTCATCCCTACGGA CGGTAGGGGAGAATGGCACGGCCAGTTCCTATCTTTCCTGCGTAAGCTTG AAATCAAGCGCGAGTCCACACCCTCATATGCCCCCCAATACAATGGCGTC GTCGAGCGCGCTCTGGGACTACTGCGAGACAAGACCGTGGCCCTGCTGCG AGGTGTAATGGAGGGTAAGAGCGACCGTCTATGGGCGGAAGCTATGGCGT ACGCATGCGATATGTGGAACCGA
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Coding sequence (CDS) from alignment at H-elongata_contig17662:4..426-

>mRNA_H-elongata_contig17662.4625.1 ID=mRNA_H-elongata_contig17662.4625.1|Name=mRNA_H-elongata_contig17662.4625.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig17662:4..426- (Himanthalia elongata Himel1 dioecious)
CTGTTTATTGATCTCTCAGGCCCCTTTCACGACATGTCTCTCGGAGGAAA
CAGATTCGTCATGCTGTGCATTGACGACTTCTCCCGCTTCAAAATGATCT
GTTTCCTCAAGCAAAAGAGCGACGCCACGAATGCGTTAAGGAAACTAATC
AACGACTACTTAACGTCCGAGGGCCTCAAGATTGGCGTCATCCCTACGGA
CGGTAGGGGAGAATGGCACGGCCAGTTCCTATCTTTCCTGCGTAAGCTTG
AAATCAAGCGCGAGTCCACACCCTCATATGCCCCCCAATACAATGGCGTC
GTCGAGCGCGCTCTGGGACTACTGCGAGACAAGACCGTGGCCCTGCTGCG
AGGTGTAATGGAGGGTAAGAGCGACCGTCTATGGGCGGAAGCTATGGCGT
ACGCATGCGATATGTGGAACCGACTGTTTATTGATCTCTCAGGCCCCTTT
CACGACATGTCTCTCGGAGGAAACAGATTCGTCATGCTGTGCATTGACGA
CTTCTCCCGCTTCAAAATGATCTGTTTCCTCAAGCAAAAGAGCGACGCCA
CGAATGCGTTAAGGAAACTAATCAACGACTACTTAACGTCCGAGGGCCTC
AAGATTGGCGTCATCCCTACGGACGGTAGGGGAGAATGGCACGGCCAGTT
CCTATCTTTCCTGCGTAAGCTTGAAATCAAGCGCGAGTCCACACCCTCAT
ATGCCCCCCAATACAATGGCGTCGTCGAGCGCGCTCTGGGACTACTGCGA
GACAAGACCGTGGCCCTGCTGCGAGGTGTAATGGAGGGTAAGAGCGACCG
TCTATGGGCGGAAGCTATGGCGTACGCATGCGATATGTGGAACCGA
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