mRNA_H-elongata_contig17650.4619.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17650.4619.1
Unique NamemRNA_H-elongata_contig17650.4619.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17650.4619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17650contigH-elongata_contig17650:1843..2372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size530
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17650.4619.1prot_H-elongata_contig17650.4619.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17650 1865..2200 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930021.6586275-UTR-H-elongata_contig17650:1842..18641622930021.6586275-UTR-H-elongata_contig17650:1842..1864Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17650 1843..1864 +
1691679249.564712-UTR-H-elongata_contig17650:1842..18641691679249.564712-UTR-H-elongata_contig17650:1842..1864Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17650 1843..1864 +
1622930021.7183096-UTR-H-elongata_contig17650:2200..23721622930021.7183096-UTR-H-elongata_contig17650:2200..2372Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17650 2201..2372 +
1691679249.5820577-UTR-H-elongata_contig17650:2200..23721691679249.5820577-UTR-H-elongata_contig17650:2200..2372Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17650 2201..2372 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930021.7069564-CDS-H-elongata_contig17650:1864..22001622930021.7069564-CDS-H-elongata_contig17650:1864..2200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17650 1865..2200 +
1691679249.5728033-CDS-H-elongata_contig17650:1864..22001691679249.5728033-CDS-H-elongata_contig17650:1864..2200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17650 1865..2200 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17650.4619.1

>prot_H-elongata_contig17650.4619.1 ID=prot_H-elongata_contig17650.4619.1|Name=mRNA_H-elongata_contig17650.4619.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MFGLGGLGLPSYKTSGTDLNPFPTPVLVGLPLTKDDFQTHSRIKNQNGEL
TCRLLEYYVQYDYDSFSNRSTIDLGAHCLPVLPTPVQLFLIGSSMSFCRV
LLGSVGLLGYQ*
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mRNA from alignment at H-elongata_contig17650:1843..2372+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17650.4619.1 ID=mRNA_H-elongata_contig17650.4619.1|Name=mRNA_H-elongata_contig17650.4619.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=530bp|location=Sequence derived from alignment at H-elongata_contig17650:1843..2372+ (Himanthalia elongata Himel1 dioecious)
GTGCCGTCTTGCCCCCCTCCAGATGTTTGGCTTGGGTGGGCTAGGCCTGC
CTTCATATAAGACTTCAGGCACTGACCTGAACCCCTTCCCGACTCCGGTC
TTGGTTGGGCTACCCTTGACAAAAGACGACTTTCAAACACACTCTAGAAT
AAAGAATCAAAATGGCGAATTAACTTGTAGATTACTGGAATATTATGTCC
AATATGATTATGATAGTTTCAGTAATCGATCTACTATAGATTTGGGAGCT
CATTGTTTACCTGTTTTACCCACCCCCGTTCAATTGTTCTTAATAGGTTC
TTCTATGTCGTTCTGTAGGGTTCTGTTGGGCTCTGTTGGGCTTCTTGGGT
ATCAATAATGATACATCGGTCTTGTATACGCGTCCGGCATGAGTTCCATG
CCGAGCCTGCACCACTAATTCCCAGCACAGCACCAGTTCTCCCGTGGGGA
GTGTCATTACACCCGTGTGAGACCCATCCTTTCCAGAGATACAAGTGGCG
TGGATAACGTCCAACCATTACACTAGTGAC
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Coding sequence (CDS) from alignment at H-elongata_contig17650:1843..2372+

>mRNA_H-elongata_contig17650.4619.1 ID=mRNA_H-elongata_contig17650.4619.1|Name=mRNA_H-elongata_contig17650.4619.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig17650:1843..2372+ (Himanthalia elongata Himel1 dioecious)
ATGTTTGGCTTGGGTGGGCTAGGCCTGCCTTCATATAAGACTTCAGGCAC
TGACCTGAACCCCTTCCCGACTCCGGTCTTGGTTGGGCTACCCTTGACAA
AAGACGACTTTCAAACACACTCTAGAATAAAGAATCAAAATGGCGAATTA
ACTTGTAGATTACTGGAATATTATGTCCAATATGATTATGATAGTTTCAG
TAATCGATCTACTATAGATTTGGGAGCTCATTGTTTACCTGTTTTACCCA
CCCCCGTTCAATTGTTCTTAATAGGTTCTTCTATGTCGTTCTGTAGGGTT
CTGTTGGGCTCTGTTGGGCTTCTTGGGTATCAATAAATGTTTGGCTTGGG
TGGGCTAGGCCTGCCTTCATATAAGACTTCAGGCACTGACCTGAACCCCT
TCCCGACTCCGGTCTTGGTTGGGCTACCCTTGACAAAAGACGACTTTCAA
ACACACTCTAGAATAAAGAATCAAAATGGCGAATTAACTTGTAGATTACT
GGAATATTATGTCCAATATGATTATGATAGTTTCAGTAATCGATCTACTA
TAGATTTGGGAGCTCATTGTTTACCTGTTTTACCCACCCCCGTTCAATTG
TTCTTAATAGGTTCTTCTATGTCGTTCTGTAGGGTTCTGTTGGGCTCTGT
TGGGCTTCTTGGGTATCAATAA
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