mRNA_H-elongata_contig17639.4612.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17639.4612.1
Unique NamemRNA_H-elongata_contig17639.4612.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17639.4612.1 vs. uniprot
Match: D7G576_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G576_ECTSI)

HSP 1 Score: 547 bits (1410), Expect = 2.080e-173
Identity = 291/411 (70.80%), Postives = 341/411 (82.97%), Query Frame = 1
Query:    1 PPGLVWRLGVKGMVPLGAVIGLSLTPSRYLAARVAGGVVLATAANVVRQAAVATRKRQAPEALLGLLRREGAGEVTREQLVDLGEKFFVKGSELWESSRQLYSAILADTVTDQRASPEDLVRLSTLKWTLGLGHEDLAACHQKSIADALSSVGRPVSMDKVIYLSERMFYQEGTMDAGYLGQCAKLRSQLGGMTQVELLRKVAQYAAPFYESVLENMVSRPESFSGEVLLRTRRRLGVSEVVAGGMHLDVYQSAIQASCFISLSEGTDGLLDAQGRLDEGDRIWLGRLRGIMGVSQFEGERALESVTAPVYRGAVQAAFAEAAGMTWGQPGVDSLRSKLKSRQGDLQLSIAAADSVVKETIRKLALQSLERALSALRSGRVG----SADEEVLQSISEVFRIREAAALLMQ 1221
            PPGLVWR GVKGMVPL   IGLS+TPSRYLA R AGG VLA AANV+RQA VATRKRQAP+ALL L+R+EGAG VTREQL+DL EK+FVKG ELW SSR +YS++LADTV +   + EDL RL  LKWTLGL  +++A+CH K + DA+SSVG PVSMDK++YLSERMFYQEGT D GYL +CA+LRSQLGGM+QV+LLRKV QYAAP Y+SVLE++ SRPESFSGEVLLRTRRRLGVSEVVAGGMHLD+YQSAIQ             LLD  GRLD+ DR+WL RLRGIM VSQFEGERALESVTAPVYR A+QAAFAEA G+  G+PGVD+LR+KL+SRQ DLQL++AAAD+VVKETIRKLAL+SLE AL A+R+G  G    S +  VL+S++EVF++REA +LL+Q
Sbjct:  161 PPGLVWRAGVKGMVPLATAIGLSVTPSRYLAVRAAGGAVLAIAANVLRQAVVATRKRQAPDALLELVRKEGAGNVTREQLMDLAEKYFVKGPELWGSSRLIYSSVLADTVAEHEPNTEDLGRLVMLKWTLGLSSQEVASCHHKVVEDAVSSVGAPVSMDKMLYLSERMFYQEGTTDEGYLDECARLRSQLGGMSQVDLLRKVTQYAAPCYQSVLEDVTSRPESFSGEVLLRTRRRLGVSEVVAGGMHLDIYQSAIQR------------LLDTNGRLDDRDRLWLSRLRGIMSVSQFEGERALESVTAPVYREAIQAAFAEAVGLQRGEPGVDALRAKLRSRQADLQLTMAAADAVVKETIRKLALRSLEVALVAMRNGGGGGPGGSPESYVLRSMTEVFQLREAVSLLVQ 559          
BLAST of mRNA_H-elongata_contig17639.4612.1 vs. uniprot
Match: A0A6H5JD75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD75_9PHAE)

HSP 1 Score: 431 bits (1107), Expect = 9.170e-133
Identity = 250/447 (55.93%), Postives = 295/447 (66.00%), Query Frame = 1
Query:    1 PPGLVWRLGVKGMVPLGAVIGLSLTPSRYLAARVAGGVVLATAANVVRQAAVATRKRQAPEALLGLLRREGAGEVTREQ------------------------------------LVDLGEKFFVKGSELWESSRQLYSAILADTVTDQRASPEDLVRLSTLKWTLGLGHEDLAACHQKSIADALSSVGRPVSMDKVIYLSERMFYQEGTMDAGYLGQCAKLRSQLGGMTQVELLRKVAQYAAPFYESVLENMVSRPESFSGEVLLRTRRRLGVSEVVAGGMHLDVYQSAIQASCFISLSEGTDGLLDAQGRLDEGDRIWLGRLRGIMGVSQFEGERALESVTAPVYRGAVQAAFAEAAGMTWGQPGVDSLRSKLKSRQGDLQLSIAAADSVVKETIRKLALQSLERALSALRSGRVG----SADEEVLQSISEVFRIREAAALLMQ 1221
            PPGLVWR GVKGMVPL   IGLS+TPSRYLA R AGG VLA AANV+RQA VATRKRQAP+ALL L+R+EGAG VTREQ                                    LV L EK+FVKG ELWESSR +YS++LAD V +   + EDL RL+ LKWTLGL  +++A+CH K + DA+SSVG PVSMDK++YLSERMFYQEG  D GYL +CA+LRSQLGGM+QV+LLRKV QYAAP Y+                                                          LLDA GRLD+ DR+WL RLRGIM VSQFEGERALESVTAPVYR A+QAAFAEA G+  G+PGVD+LR+KL+SRQ DLQLS+AAAD+ VKETIRKLAL SLE AL ALR+G       S + +VL+S++EVF++REA +LL+Q
Sbjct:  139 PPGLVWRAGVKGMVPLATAIGLSVTPSRYLAVRAAGGAVLAIAANVLRQAVVATRKRQAPDALLELVRKEGAGNVTREQVGAGFWIVAHDPFRRPRVLPPPMILPTPLNNHWHAKLVGLAEKYFVKGPELWESSRLIYSSVLADAVAEHEPNTEDLDRLAMLKWTLGLSSQEVASCHHKVVEDAVSSVGAPVSMDKMLYLSERMFYQEGATDEGYLDECARLRSQLGGMSQVDLLRKVTQYAAPCYQR---------------------------------------------------------LLDANGRLDDRDRLWLSRLRGIMSVSQFEGERALESVTAPVYREALQAAFAEAVGLQRGEPGVDALRAKLRSRQADLQLSMAAADAAVKETIRKLALGSLEVALVALRNGGGDGPGDSPESDVLRSMTEVFQLREAVSLLVQ 528          
BLAST of mRNA_H-elongata_contig17639.4612.1 vs. uniprot
Match: A0A836C8K3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8K3_9STRA)

HSP 1 Score: 232 bits (592), Expect = 9.010e-65
Identity = 139/301 (46.18%), Postives = 181/301 (60.13%), Query Frame = 1
Query:  418 CHQKSIADALSSVGRPVSMDKVIYLSERMFYQEGTMD------------------------------------------AGYLGQCAKLRSQLGGMTQVELLRKVAQYAAPFYESVLENMVSRPESFSGEVLLRTRRRLGVSEVVAGGMHLDVYQSAIQASCFISLSEGTDGLLDAQGRLDEGDRIWLGRLRGIMGVSQFEGERALESVTAPVYRGAVQAAFAE---------AAGMTWGQPGVDSLRSKLKSRQGDLQLSIAAADSVVKETIRKLALQSLERALSALRSGRVGSADEEVL 1167
            CH + +++ L       S DK+++LSERM+Y++G  D                                          A YL +CA+LR+  G MTQVELLR+V+ YA+PFY+ +L  ++ RP+ FS ++LLRTRRRLG+SEVVAGGMHLD YQ  IQ            G+L A G+LDE  R  L +LRG+MG++QFEGERALE+VTAPVYR +++ AFAE         A  + WG PGVD+LR  LK RQ  LQLS AAADSV+KETIRK A QSLE AL+A+R+      D +V+
Sbjct:   53 CHMEVVSELLRGHVE-ASTDKLLFLSERMYYRDGLADKASYALQTPRCSLVTHTYTHDTTPCRDSRVPFSAHPRRPVAAAAYLDECARLRAAFGSMTQVELLRRVSAYASPFYQDILAQLLERPDQFSADLLLRTRRRLGISEVVAGGMHLDNYQRHIQ------------GVLTANGKLDETHRASLAKLRGLMGITQFEGERALEAVTAPVYRESLERAFAEERHPAEWPQAMRLQWGDPGVDALRGTLKERQSQLQLSQAAADSVLKETIRKAAQQSLEAALAAVRNPPESGPDMDVV 340          
BLAST of mRNA_H-elongata_contig17639.4612.1 vs. uniprot
Match: A0A7S2XWC5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWC5_9STRA)

HSP 1 Score: 108 bits (270), Expect = 8.090e-22
Identity = 102/409 (24.94%), Postives = 188/409 (45.97%), Query Frame = 1
Query:    7 GLVWRLG-------VKGMVPLGAVIGLSLTPSRYLAARVAGGVVLATAANVVRQAAVATRKRQAPEALLGLLRREGAGEVT-------REQLVDLGEKFFVKGSELWESSRQLYSAILADTVTDQRASPEDLVRLSTLK-------WTLGLGHEDLAACHQKSIADALSSVGRPVS----------MDKVIYLSERMFYQEGTMDAGYLGQCAKLRSQLGGMTQVELLRKVAQYAAPFYESVLENMVSRPESFSGEVLLRTRRRLGVSEVVAGGMHLDVYQSAIQASCFISLSEGTDGLLDAQGRLDEGDRIWLGRLRGIMGVSQFEGERALESVTAPVYRGAVQAAFAEAAGMT-WGQPGVDSLRSKLKSRQGDLQLSIAAADSVVKETIRKLALQSLERALSALRSG 1137
            GL  R+G       VK   P+ + +G  L PSR+L  ++ GGV       + ++  +  R++ A   +  L+      +            +  L + + +   +L      +Y   LA T+         + +L  +K        T+G  H ++A      + + +++   P S          +DK ++L++R+F Q   +  G   Q      ++  +   +  ++V + A PFY + LE  +  PES S ++L++ R+ LG+S + A  MHL+ Y + IQ             +L+ +G L + D   L +LRG++ +SQFEG+R+LE+ TAP+YR  V     E    T      +    ++L+ R+ +L +   A ++VVKET+R++     + A++ LR G
Sbjct:  123 GLFERVGPRFSVAAVKAFTPIASALGFMLMPSRHLPVKLLGGVAGLYVGRLGKKVLLRARRQAAKLGIAKLVLLPSTEDQDPILSASESSPIQKLLDSYGMAMDDLESYLGDIYELCLAQTMRTDEVKMGVVGKLGMVKRALQLSPQTVGQAHYNVAQQVVDRVEEMVAAASDPSSPSAPKHARHLVDKFLFLTDRVFDQH--LAPGDRTQELARVLEVLELDAAKAEKRVLEVAVPFYRNHLEAALRSPESTSADMLIKIRKSLGISSLSATPMHLEGYSAKIQR------------MLE-RGELTDQDLGTLAKLRGMLSISQFEGDRSLEAFTAPLYREVVTDVIEEMIAQTKLPDHLLKQYLARLEERRQELHMPSQAGENVVKETLRRVLQGPFDEAVNLLRRG 516          
BLAST of mRNA_H-elongata_contig17639.4612.1 vs. uniprot
Match: B8BS77_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BS77_THAPS)

HSP 1 Score: 107 bits (266), Expect = 3.280e-21
Identity = 91/300 (30.33%), Postives = 143/300 (47.67%), Query Frame = 1
Query:    4 PGLVWRLGVKGMVPLGAVIGLSLTPSRYLAARVAGGVVLATAANVVRQAAVATRKRQA-PEALLGLLRREGAGEVT-REQLVDLGEKFFVKGSELWESSRQLYSAILADTVTDQRASPEDLVRLSTLKWTL-------GLGHEDLAACHQKSIA-----DALSSVGRP--VSMDKVIYLSERMFYQEGTMDAGYLGQCAKLRSQLGGMTQVELLRKVAQYAAPFYESVLENMVSRPES--FSGEVLLRTRRRLGVSEVVAGGMHLDVYQSAIQASCFISLSEGTDGLLDAQGRLDEGDRI 849
            P +V  +GV  + PL  ++G ++TPSR LAAR  GGVV A  A  V ++A+    R+A P A+   +   G  +    + +  L E + V   +       +YS  L     +      +L  LS+L+  L       G GH D A    + I      D L     P  +S+DK+++LSER F Q G  D  +  + +++   LGG+   E + +V   A PFYE  L +  S+ ES   S ++L R R  LG+ E  A  MH++ +   ++    +S  E  +G  D +   DEG+R+
Sbjct:  102 PKMVKLVGVAAL-PLSYIVGAAMTPSRRLAARAVGGVVAAVTAGGVGKSALEEDVRKACPAAIAQRVLDLGLDDANIADGIKRLQEDYGVDDEDFATMCTNVYSVYLVGMAKNPLTKTAELKELSSLRNALDLDNQQTGQGHADAAVQFYRDILRYTTEDELDDEDHPDRISLDKLLFLSERAFRQGGETDEAFTFEFSRVAKNLGGIEMEEAMDRVRDVALPFYERALSSTRSKLESGAVSSDMLTRARATLGIDEADAKDMHIEAFGKEVRVQLGLS-EEDDEG--DEELDYDEGNRL 397          
BLAST of mRNA_H-elongata_contig17639.4612.1 vs. uniprot
Match: A0A1Z5J5X5_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J5X5_FISSO)

HSP 1 Score: 74.7 bits (182), Expect = 1.200e-10
Identity = 80/344 (23.26%), Postives = 147/344 (42.73%), Query Frame = 1
Query:   13 VWRLGVKGMVPLGAVIGLSLTPSRYLAARVAGGVVLATAANVVRQAAVATRKRQAPEALLGLLRREGAGEVTREQLV--DLGEKFFVKGSELWESSRQLYSAILADTVTDQ-RASPEDLVRLSTLKWTLGLGHEDLAACHQKSIAD------------ALSSVGRP--VSMDKVIYLSERMFYQEGTMDAGYLGQCAKLRSQLGGMTQVELLRKVAQYAAPFYESVLENMVSR--PESFSGEVLLRTRRRLGVSEVVAGGMHLDVYQSAIQASCFISLSEGTDGL---------LDAQGRLDEGDRI-WLGRLRGIMGVSQFEGERALESVTAPVYRGAVQAAF 957
            +++L     +P+ A++G  L PSR +AA  AG +V   A  V +       +  A  AL   +   G  +VT+ Q    D+ + F +   +L     ++Y++ L   V  Q  A   ++  L  LK  L L +  +   H  + A+             L     P  ++MDK+++LSER   ++      +  +  ++   +G +T    + +VA    PFY   L++  S+    + S ++L R R  LG+ E VA  MH+  +   ++    +   +  D           LD        + +  L  LR I+G+S+ + +  + S  +P+Y+    AA 
Sbjct:   90 LFKLASYASIPVSALLGFGLVPSRRIAAHAAGALVTGIAGAVGKSRLDVLTQSGAKPALAQAIVDAGLEDVTKTQAAVRDVQDSFGLSDEDLEVLCTEIYASYLHGMVKFQPTAKTSEIKELQKLKQALSLQNMAVGEAHATAAAEWYRQTCLFTPTEELEDPKHPDRLAMDKLLFLSERALSEDSPQAFNF--EMTRVAKAVG-LTLPVAMERVASVVEPFYHRALQSTRSKLGTNAVSSDMLKRARETLGIKEEVAADMHVFTFNQEVRVCLGLPERKMNDXXXXXXXXAMPLDLSSLKFSDEALNRLDSLRDILGLSEMDMDYEIISEASPLYQTTALAAM 430          
BLAST of mRNA_H-elongata_contig17639.4612.1 vs. uniprot
Match: A0A813I304_POLGL (Hypothetical protein (Fragment) n=4 Tax=Polarella glacialis TaxID=89957 RepID=A0A813I304_POLGL)

HSP 1 Score: 72.4 bits (176), Expect = 6.410e-10
Identity = 95/366 (25.96%), Postives = 164/366 (44.81%), Query Frame = 1
Query:   40 VPLGAVIGLSLTPSRYLAARVAG--GVVLATAANVVRQAAVATRKRQAPEALLGLLRREGAGE-VTREQLVDLGE----KFFV----KGSELWESSR--QLYSAILADTVTDQRASPEDLVRLSTLKWTLGLGHEDLAACHQKS----IADALSSV-GRP--VSMDKVIYLSERMFYQEGTMDAGYLGQCAKLRSQLGGMTQVELLRKVAQYAAPFYESVLENMVSRPESFSGEVLLRTRRRLGVSEVVAGGMHLDVYQSAIQASCFISLSEGTDGLLDAQGRLDEGDRIWLGRLRGIMGVSQFEGERALESVTAPVYRGAVQAAFAEAAGMTWGQPGVDSLRSKLKSRQGDLQLSIAAADSVVKE 1077
            +P  ++    LTP   LA  +AG  G+V+ +A     + A   +K  A  A+  LL +  A E V+ E+L  L +    +F V    K SE WE     +LY A+L + +        DL  L  LK  L L    +   H+ +    ++   S + G P  V+ DK+++LSER F  EG  +AG   +  +L  Q+  + + E   +VA  +   Y+  L  +  + ++ + E L   +   GV+   A  M+ + Y+        I+  +   G L AQG+      + L R RG++ + +     +  +V +P+    V+A      G       +    + L +R+ +L LS +AA S V++
Sbjct:  149 LPAFSLAAAQLTPGSQLARGLAGALGLVIGSATGAFLKTA---KKDAATAAIAQLLAQHMASEAVSVEELRSLVQAQRKRFGVPADSKASEQWEDGALIELYEALLNNLLNGPEHDAGDLPALQRLKAALELDGIVVGNAHRHAAQLLVSRGYSGLEGEPMRVATDKLLFLSERAFSDEGPEEAGVY-EMGRL-CQVLNIAEREARERVAAVSKALYQQSLSAVADKVDAHTAEALAGAKLAFGVAGEEAERMNTETYKQ-------IAADQLAGGRLAAQGK------VTLERARGVLQLGERAATASFVAVASPILLKDVEALATRIQGGATAAENLKEAAASLVTRRDELGLSASAAFSCVED 496          
BLAST of mRNA_H-elongata_contig17639.4612.1 vs. uniprot
Match: A0A7S2UAH8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAH8_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 8.180e-8
Identity = 70/290 (24.14%), Postives = 120/290 (41.38%), Query Frame = 1
Query:    4 PGLVWRLGVKGMVPLGAVIGLSLTPSRYLAARVAGGVVLATAANVVRQAAVATRKRQAPEALLGLLRREGAGEVTREQLVD----LGEKFFVKGSELWESSRQLYSAILADTVTDQR-ASPEDLVRLSTLKWTLGLGHEDLAACHQKSIADA------------LSSVGRP--VSMDKVIYLSERMFYQEGTMDAGYLGQCAKLR--------------SQLGGMTQVELLRKVAQYAAPFYESVLENMVSRPES--FSGEVLLRTRRRLGVSEVVAGGMHLDVYQSAIQ 768
            PGL+ +L     VP+ AV+G  +TPSR LAA   G +V  +   + +          A  A+   +   G    +   L      +   + ++  +   +   +Y + L   V +   A   +L  L  LK  LGLG+  +   H  +  D             L+ V  P  +++DK ++LSER F   G     +  + +++               + +GG    E++ +VA  A PFY   L +  ++ +S     +VL R R  +G+SE VA  MH+      I+
Sbjct:   93 PGLI-KLASLASVPVSAVVGFVMTPSRRLAAHTVGSIVTGSLGAIGKSRLDMAASAAALPAIAQAVIDHGLDASSEASLTSAIASVKSTYNMEDGDFEAACGDIYKSYLIGMVKNNPIAKTAELKELVRLKDVLGLGNLLVGEAHATAAKDLYRQTCLFTPEEELADVDHPDRMALDKFLFLSERTFVGNGETPEAFSYEMSRIAKAFDIKITKSNAAAADVGGAMS-EIMERVAHVAEPFYRRALVSTRAKLDSGAVQPDVLKRARATVGISEEVARDMHIQALTEEIR 380          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17639.4612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G576_ECTSI2.080e-17370.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD75_9PHAE9.170e-13355.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C8K3_9STRA9.010e-6546.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2XWC5_9STRA8.090e-2224.94Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
B8BS77_THAPS3.280e-2130.33Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A1Z5J5X5_FISSO1.200e-1023.26Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A813I304_POLGL6.410e-1025.96Hypothetical protein (Fragment) n=4 Tax=Polarella ... [more]
A0A7S2UAH8_9STRA8.180e-824.14Hypothetical protein n=1 Tax=Attheya septentrional... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17639contigH-elongata_contig17639:802..4597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue2e-20
Seed eggNOG ortholog35128.Thaps21043
Preferred nameTic110
EggNOG free text desc.Chloroplast envelope transporter
EggNOG OGs2CXZA@1,2S0W8@2759,2XA66@2836
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons8
Model size1221
Cds size1221
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17639.4612.1prot_H-elongata_contig17639.4612.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17639 802..4597 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930021.009983-CDS-H-elongata_contig17639:801..9371622930021.009983-CDS-H-elongata_contig17639:801..937Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17639 802..937 -
1691679249.205121-CDS-H-elongata_contig17639:801..9371691679249.205121-CDS-H-elongata_contig17639:801..937Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17639 802..937 -
1622930021.025975-CDS-H-elongata_contig17639:1187..13371622930021.025975-CDS-H-elongata_contig17639:1187..1337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17639 1188..1337 -
1691679249.2211366-CDS-H-elongata_contig17639:1187..13371691679249.2211366-CDS-H-elongata_contig17639:1187..1337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17639 1188..1337 -
1622930021.0393274-CDS-H-elongata_contig17639:1874..20051622930021.0393274-CDS-H-elongata_contig17639:1874..2005Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17639 1875..2005 -
1691679249.2292342-CDS-H-elongata_contig17639:1874..20051691679249.2292342-CDS-H-elongata_contig17639:1874..2005Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17639 1875..2005 -
1622930021.0500891-CDS-H-elongata_contig17639:2271..24421622930021.0500891-CDS-H-elongata_contig17639:2271..2442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17639 2272..2442 -
1691679249.2377048-CDS-H-elongata_contig17639:2271..24421691679249.2377048-CDS-H-elongata_contig17639:2271..2442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17639 2272..2442 -
1622930021.0606315-CDS-H-elongata_contig17639:2940..29881622930021.0606315-CDS-H-elongata_contig17639:2940..2988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17639 2941..2988 -
1691679249.2458947-CDS-H-elongata_contig17639:2940..29881691679249.2458947-CDS-H-elongata_contig17639:2940..2988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17639 2941..2988 -
1622930021.076185-CDS-H-elongata_contig17639:3310..34661622930021.076185-CDS-H-elongata_contig17639:3310..3466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17639 3311..3466 -
1691679249.2545874-CDS-H-elongata_contig17639:3310..34661691679249.2545874-CDS-H-elongata_contig17639:3310..3466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17639 3311..3466 -
1622930021.0890038-CDS-H-elongata_contig17639:3903..40951622930021.0890038-CDS-H-elongata_contig17639:3903..4095Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17639 3904..4095 -
1691679249.275705-CDS-H-elongata_contig17639:3903..40951691679249.275705-CDS-H-elongata_contig17639:3903..4095Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17639 3904..4095 -
1622930021.1008108-CDS-H-elongata_contig17639:4360..45971622930021.1008108-CDS-H-elongata_contig17639:4360..4597Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17639 4361..4597 -
1691679249.285488-CDS-H-elongata_contig17639:4360..45971691679249.285488-CDS-H-elongata_contig17639:4360..4597Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17639 4361..4597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17639.4612.1

>prot_H-elongata_contig17639.4612.1 ID=prot_H-elongata_contig17639.4612.1|Name=mRNA_H-elongata_contig17639.4612.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=407bp
PPGLVWRLGVKGMVPLGAVIGLSLTPSRYLAARVAGGVVLATAANVVRQA
AVATRKRQAPEALLGLLRREGAGEVTREQLVDLGEKFFVKGSELWESSRQ
LYSAILADTVTDQRASPEDLVRLSTLKWTLGLGHEDLAACHQKSIADALS
SVGRPVSMDKVIYLSERMFYQEGTMDAGYLGQCAKLRSQLGGMTQVELLR
KVAQYAAPFYESVLENMVSRPESFSGEVLLRTRRRLGVSEVVAGGMHLDV
YQSAIQASCFISLSEGTDGLLDAQGRLDEGDRIWLGRLRGIMGVSQFEGE
RALESVTAPVYRGAVQAAFAEAAGMTWGQPGVDSLRSKLKSRQGDLQLSI
AAADSVVKETIRKLALQSLERALSALRSGRVGSADEEVLQSISEVFRIRE
AAALLMQ
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mRNA from alignment at H-elongata_contig17639:802..4597-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17639.4612.1 ID=mRNA_H-elongata_contig17639.4612.1|Name=mRNA_H-elongata_contig17639.4612.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3796bp|location=Sequence derived from alignment at H-elongata_contig17639:802..4597- (Himanthalia elongata Himel1 dioecious)
CCGCCGGGGTTGGTATGGCGCTTGGGAGTCAAGGGAATGGTTCCGCTAGG GGCGGTGATTGGATTATCCCTGACCCCGTCGCGATACCTTGCAGCAAGAG TTGCTGGGGGCGTCGTGCTGGCCACGGCGGCCAATGTAGTGCGGCAGGCA GCGGTGGCCACGAGGAAGCGCCAGGCACCGGAAGCGCTACTAGGGCTCTT GAGGAGAGAGGGGGCGGGCGAGGTCACCAGGGAACAGGTGGGCAGGGTAT GCCTCCGCTCCAAGCATCGGTATCATTGTTGTGTGTCGCTCTTTTCGTTA CGATATCTTGGACTGCGGTCGGAGGAGGGTAGCTGCCAAGAGTTCAGCAA CCCTTCATCCTGTGTTTAACAATCCACTCGCTCTCTAGACTACATGGCTC GCTCCCGTGTTGGAGGAAACGAGGCGCCGCTCCGCGATCGCCGCCGCCTT TTCACCTCCTCCAAACCCGGATGTCGCATTTACACTTTGCCACGACATGC AGCTCGTTGATCTCGGAGAGAAGTTCTTCGTGAAGGGATCGGAACTGTGG GAGTCGTCGCGTCAGTTGTACTCCGCCATCCTTGCCGACACAGTGACGGA CCAGCGAGCTAGCCCCGAAGACTTGGTCCGCCTCTCCACCCTCAAGTGGA CGCTCGGACTCGGTCACGAGGATTTGGCGGCCTGCCATCAGAAGGTAAGA AATGGATGAAGGTTTTCCTGGAATTGAAAACGCTGATGAGGCGTTCACGC TCGAGTTTTGGGTTGCGGCGCGCGCGCATCACCTCGCGCCCGCAAAACGG AGGAAATAGTTTGCTTGCTTGTAATGCGTAGCGGTCTAGAGATGTTTGAA GGAACTAGCTGGTGCCGTTGCACCCCGCGTCATGTTCTCGTGATTTATTT TGAGGAAAACGAAGGCACGCAAAGATTCGTGCACCCTGCGCGTGCGGTGT CATGAGGAAGGCGGGCACACGAATCGACAGATCCCCAAGAGCAGAGGAAA TATATGTCGCAGTAGGTTATATTTAGTGCGTTTATGCTGTGAGGCACCGT GAAGTCACGCTAGTTATACGGCCGTTGCTCTCCCGCCGTGTCGCTTTTGT CCTCTTCACCCAATCGCTCTGGACTGGGCAGTCGATCGCGGATGCACTGA GTTCCGTGGGGCGGCCCGTTTCAATGGACAAAGTAATTTACCTGTCAGAG CGCATGTTCTACCAAGAGGGCACGATGGACGCGGGATACCTTGGCCAATG TGCTAAGCTTCGAAGTCAGCTAGGGGGCATGACGCAGGTAGACACCTATA GGATCCAGACAGCGAACATAATTATATATTGGTGCGCACGATGCGTGTGA TCGGTGTTTTTACCCAGAAGGGTCCCGGTTTGGTTTTGGCGGTGCGTTGA AACCCGTCCTGTTACTCCAGCGTAGGGTAAAAGCAAACATATCGTGCCCT GACTTCACGAGGTTTAGCAAGGATTCGTTCCACTTTTCTTCCATTGACAG TGATAGAGTGTGAAAATCCAGATTCCCCCCACTGCCCGCCCCCCCACTTT CTGCCTCCTCTTAATCCTTATCCTGAATGACATTGTGTCGCACCGCCTCC CAATCCCAGGTCGAACTCCTGCGCAAGGTGGCTCAGTACGCGGCCCCGTT CTATGAGGTGCGATCACTCGAGATACACGATCTAGTGTATGTAGGCGTGT CTTTGTGTGGGAATGTTTGTTTTTGCAGTCCCGTCATCGTCCGCTTTAGC GCTTAAGCGTGCTTCTGGGTATCCGACATTTGCCTCACTGGACGGGGAGG CCAACCGCCGTCCTTCAGATGCTCCGCCTTACATGCCCTTCTACTTTTGA ACCCAAACTAATTTACTAACTTCCGAAGTGCATATGCTCCTGGGTGGTTT CGAATGTCTGTCCTTGCTGGCTACGCCGTTCGTTCACGTGCGTGCGACTC CCTCAGTAGGGAAAGCTCTTTCTCGCTGGATAGTAATTACGATAGCAGTC GGATGCAGCAACGAGTGTAACAACGAGCGTTGACTAGGTCGTGGTTTTAC CGTCCAGCTGGCAGTCTTGTGTAACCGAGCGACGAAATATTTCTTCCGGG ACTGACAGCAGCGATCTTGCATTTCTGCCGCGCGTGCCGGATGGGTGGGC GGCAGTCCGTCCTAGAGAACATGGTCTCGCGGCCGGAAAGTTTCTCGGGA GAGGTCTTGCTGCGCACCCGGAGAAGGCTAGGGGTCAGCGAGGTTGTCGC AGGGGGCATGCACCTCGATGTCTACCAGTCGGCCATACAGGCAAGTTGTT TTATATCACTGTCTGAAGGGACAGACGTGGTTCCAGACACATATTTTGAG AGGGTAGGGTGTGATGTGAAGGACACTGCCGCCGCCGCTGCTGCCTATCG TATGTCAGCCGCCCGAATGCGCGTCGTGATTGTCGTCGTCCATATCGACA CAGCGATCGTGTGTCACGAACGTTCATCCCTTTGAAATCTTCCCGTATTA TGCTAAAAGACGAGGCACAGCGCCCGTCCCTTAGCGTCCATCCCTCCCTG GCTTCTGAACTGTGTTGCGCCTTTCGCGATGAACGGACGCAGGGCTTGCT GGACGCCCAAGGCAGGCTGGACGAAGGGGATCGGATTTGGCTGGGCCGTC TGAGAGGCATCATGGGCGTCAGCCAGTTCGAAGGAGAGCGGGCGCTGGAA TCGGTCACTGCACCAGTCTACAGGTGAGGAAGTAACGCCAGCATGAATAA AAACTACTAGTATACGGTAAGTCACAGCGACGGCGAGGACCAAGTTCGTT TCGCTGTGTTAGCAGTAAGAGTAGTTTTTTGCCAGGAGAAGCTTACGCTT GTTTTTTTGTCCGCGCTTCGATTCTAATAATATCGCTCTATTAGTGTATA TATCGTACTAGGACATCGTCAGACATGCCGCCGAGCGTGAGTGGTCACCG ATACACCCAAAACGAGGTCAAAAGCAGCAGATGTATCTATTATAGCAACA TCAGGACCCGCCGCCGTTGTCGCGTTCACGTTTCCCGGCGATCCGAGACA AGTTTTTACCCGTGTGACAAAAGTGGGCACGTTCCACCCATCCTGATTTT AATTTTTTCCTTTTCCGAACTTATTTTTTTTACAAGTTGCGGATTGAAAG GATGTCATTCCGGCCCGGCTTGCAGATCGTCTCCCGATTCTCCTTCTCTG CTCCCTGCCAACGATGTCCTTCGGTCGCAATTGGGACCCGCGTGATCGGG CGTTATACAGAGGGGCCGTGCAGGCGGCTTTCGCCGAGGCGGCGGGAATG ACCTGGGGACAGCCGGGCGTCGATTCCCTGAGGTCGAAGCTCAAGTCTAG GCAGGGAGACCTACAGTTGTCGATAGCGGCCGCCGACTCCGTCGTTAAGG AAACTATTCGGTGAGATTAGGGTGGCAACTGGGATGTTGCAGGGATATTA TTGTCATCACAATGCGATTGAATGAACCTCCACCCGAGCAGCCGTGTCGT CCTTTTATGACCAGAAACGGTCGTGTATGAATACAAGGTGGGCCATGATA CCCACGGAGGGAAGCGACAGGGGGGTACTGCGATGGACAATCCCTCCCCC ATCTTACACGAAGCATCCGCCGCGGTCGCTGTTTTCTTAAACGCGTCGGC CGTGTGGCAGGAAACTTGCCCTCCAATCGTTGGAGCGGGCGTTGTCGGCC CTCAGGAGCGGACGGGTAGGGTCTGCCGACGAGGAGGTACTACAATCTAT CTCGGAAGTTTTCCGTATCAGGGAAGCTGCAGCATTGCTCATGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig17639:802..4597-

>mRNA_H-elongata_contig17639.4612.1 ID=mRNA_H-elongata_contig17639.4612.1|Name=mRNA_H-elongata_contig17639.4612.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2442bp|location=Sequence derived from alignment at H-elongata_contig17639:802..4597- (Himanthalia elongata Himel1 dioecious)
CCGCCGGGGTTGGTATGGCGCTTGGGAGTCAAGGGAATGGTTCCGCTAGG
GGCGGTGATTGGATTATCCCTGACCCCGTCGCGATACCTTGCAGCAAGAG
TTGCTGGGGGCGTCGTGCTGGCCACGGCGGCCAATGTAGTGCGGCAGGCA
GCGGTGGCCACGAGGAAGCGCCAGGCACCGGAAGCGCTACTAGGGCTCTT
GAGGAGAGAGGGGGCGGGCGAGGTCACCAGGGAACAGCCGCCGGGGTTGG
TATGGCGCTTGGGAGTCAAGGGAATGGTTCCGCTAGGGGCGGTGATTGGA
TTATCCCTGACCCCGTCGCGATACCTTGCAGCAAGAGTTGCTGGGGGCGT
CGTGCTGGCCACGGCGGCCAATGTAGTGCGGCAGGCAGCGGTGGCCACGA
GGAAGCGCCAGGCACCGGAAGCGCTACTAGGGCTCTTGAGGAGAGAGGGG
GCGGGCGAGGTCACCAGGGAACAGCTCGTTGATCTCGGAGAGAAGTTCTT
CGTGAAGGGATCGGAACTGTGGGAGTCGTCGCGTCAGTTGTACTCCGCCA
TCCTTGCCGACACAGTGACGGACCAGCGAGCTAGCCCCGAAGACTTGGTC
CGCCTCTCCACCCTCAAGTGGACGCTCGGACTCGGTCACGAGGATTTGGC
GGCCTGCCATCAGAAGCTCGTTGATCTCGGAGAGAAGTTCTTCGTGAAGG
GATCGGAACTGTGGGAGTCGTCGCGTCAGTTGTACTCCGCCATCCTTGCC
GACACAGTGACGGACCAGCGAGCTAGCCCCGAAGACTTGGTCCGCCTCTC
CACCCTCAAGTGGACGCTCGGACTCGGTCACGAGGATTTGGCGGCCTGCC
ATCAGAAGTCGATCGCGGATGCACTGAGTTCCGTGGGGCGGCCCGTTTCA
ATGGACAAAGTAATTTACCTGTCAGAGCGCATGTTCTACCAAGAGGGCAC
GATGGACGCGGGATACCTTGGCCAATGTGCTAAGCTTCGAAGTCAGCTAG
GGGGCATGACGCAGTCGATCGCGGATGCACTGAGTTCCGTGGGGCGGCCC
GTTTCAATGGACAAAGTAATTTACCTGTCAGAGCGCATGTTCTACCAAGA
GGGCACGATGGACGCGGGATACCTTGGCCAATGTGCTAAGCTTCGAAGTC
AGCTAGGGGGCATGACGCAGGTCGAACTCCTGCGCAAGGTGGCTCAGTAC
GCGGCCCCGTTCTATGAGGTCGAACTCCTGCGCAAGGTGGCTCAGTACGC
GGCCCCGTTCTATGAGTCCGTCCTAGAGAACATGGTCTCGCGGCCGGAAA
GTTTCTCGGGAGAGGTCTTGCTGCGCACCCGGAGAAGGCTAGGGGTCAGC
GAGGTTGTCGCAGGGGGCATGCACCTCGATGTCTACCAGTCGGCCATACA
GGCAAGTTGTTTTATATCACTGTCTGAAGGGACAGACTCCGTCCTAGAGA
ACATGGTCTCGCGGCCGGAAAGTTTCTCGGGAGAGGTCTTGCTGCGCACC
CGGAGAAGGCTAGGGGTCAGCGAGGTTGTCGCAGGGGGCATGCACCTCGA
TGTCTACCAGTCGGCCATACAGGCAAGTTGTTTTATATCACTGTCTGAAG
GGACAGACGGCTTGCTGGACGCCCAAGGCAGGCTGGACGAAGGGGATCGG
ATTTGGCTGGGCCGTCTGAGAGGCATCATGGGCGTCAGCCAGTTCGAAGG
AGAGCGGGCGCTGGAATCGGTCACTGCACCAGTCTACAGGGCTTGCTGGA
CGCCCAAGGCAGGCTGGACGAAGGGGATCGGATTTGGCTGGGCCGTCTGA
GAGGCATCATGGGCGTCAGCCAGTTCGAAGGAGAGCGGGCGCTGGAATCG
GTCACTGCACCAGTCTACAGAGGGGCCGTGCAGGCGGCTTTCGCCGAGGC
GGCGGGAATGACCTGGGGACAGCCGGGCGTCGATTCCCTGAGGTCGAAGC
TCAAGTCTAGGCAGGGAGACCTACAGTTGTCGATAGCGGCCGCCGACTCC
GTCGTTAAGGAAACTATTCGAGGGGCCGTGCAGGCGGCTTTCGCCGAGGC
GGCGGGAATGACCTGGGGACAGCCGGGCGTCGATTCCCTGAGGTCGAAGC
TCAAGTCTAGGCAGGGAGACCTACAGTTGTCGATAGCGGCCGCCGACTCC
GTCGTTAAGGAAACTATTCGGAAACTTGCCCTCCAATCGTTGGAGCGGGC
GTTGTCGGCCCTCAGGAGCGGACGGGTAGGGTCTGCCGACGAGGAGGTAC
TACAATCTATCTCGGAAGTTTTCCGTATCAGGGAAGCTGCAGCATTGCTC
ATGCAGGAAACTTGCCCTCCAATCGTTGGAGCGGGCGTTGTCGGCCCTCA
GGAGCGGACGGGTAGGGTCTGCCGACGAGGAGGTACTACAATCTATCTCG
GAAGTTTTCCGTATCAGGGAAGCTGCAGCATTGCTCATGCAG
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