mRNA_H-elongata_contig17639.4612.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17639.4612.1 vs. uniprot
Match: D7G576_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G576_ECTSI) HSP 1 Score: 547 bits (1410), Expect = 2.080e-173 Identity = 291/411 (70.80%), Postives = 341/411 (82.97%), Query Frame = 1
Query: 1 PPGLVWRLGVKGMVPLGAVIGLSLTPSRYLAARVAGGVVLATAANVVRQAAVATRKRQAPEALLGLLRREGAGEVTREQLVDLGEKFFVKGSELWESSRQLYSAILADTVTDQRASPEDLVRLSTLKWTLGLGHEDLAACHQKSIADALSSVGRPVSMDKVIYLSERMFYQEGTMDAGYLGQCAKLRSQLGGMTQVELLRKVAQYAAPFYESVLENMVSRPESFSGEVLLRTRRRLGVSEVVAGGMHLDVYQSAIQASCFISLSEGTDGLLDAQGRLDEGDRIWLGRLRGIMGVSQFEGERALESVTAPVYRGAVQAAFAEAAGMTWGQPGVDSLRSKLKSRQGDLQLSIAAADSVVKETIRKLALQSLERALSALRSGRVG----SADEEVLQSISEVFRIREAAALLMQ 1221
PPGLVWR GVKGMVPL IGLS+TPSRYLA R AGG VLA AANV+RQA VATRKRQAP+ALL L+R+EGAG VTREQL+DL EK+FVKG ELW SSR +YS++LADTV + + EDL RL LKWTLGL +++A+CH K + DA+SSVG PVSMDK++YLSERMFYQEGT D GYL +CA+LRSQLGGM+QV+LLRKV QYAAP Y+SVLE++ SRPESFSGEVLLRTRRRLGVSEVVAGGMHLD+YQSAIQ LLD GRLD+ DR+WL RLRGIM VSQFEGERALESVTAPVYR A+QAAFAEA G+ G+PGVD+LR+KL+SRQ DLQL++AAAD+VVKETIRKLAL+SLE AL A+R+G G S + VL+S++EVF++REA +LL+Q
Sbjct: 161 PPGLVWRAGVKGMVPLATAIGLSVTPSRYLAVRAAGGAVLAIAANVLRQAVVATRKRQAPDALLELVRKEGAGNVTREQLMDLAEKYFVKGPELWGSSRLIYSSVLADTVAEHEPNTEDLGRLVMLKWTLGLSSQEVASCHHKVVEDAVSSVGAPVSMDKMLYLSERMFYQEGTTDEGYLDECARLRSQLGGMSQVDLLRKVTQYAAPCYQSVLEDVTSRPESFSGEVLLRTRRRLGVSEVVAGGMHLDIYQSAIQR------------LLDTNGRLDDRDRLWLSRLRGIMSVSQFEGERALESVTAPVYREAIQAAFAEAVGLQRGEPGVDALRAKLRSRQADLQLTMAAADAVVKETIRKLALRSLEVALVAMRNGGGGGPGGSPESYVLRSMTEVFQLREAVSLLVQ 559
BLAST of mRNA_H-elongata_contig17639.4612.1 vs. uniprot
Match: A0A6H5JD75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD75_9PHAE) HSP 1 Score: 431 bits (1107), Expect = 9.170e-133 Identity = 250/447 (55.93%), Postives = 295/447 (66.00%), Query Frame = 1
Query: 1 PPGLVWRLGVKGMVPLGAVIGLSLTPSRYLAARVAGGVVLATAANVVRQAAVATRKRQAPEALLGLLRREGAGEVTREQ------------------------------------LVDLGEKFFVKGSELWESSRQLYSAILADTVTDQRASPEDLVRLSTLKWTLGLGHEDLAACHQKSIADALSSVGRPVSMDKVIYLSERMFYQEGTMDAGYLGQCAKLRSQLGGMTQVELLRKVAQYAAPFYESVLENMVSRPESFSGEVLLRTRRRLGVSEVVAGGMHLDVYQSAIQASCFISLSEGTDGLLDAQGRLDEGDRIWLGRLRGIMGVSQFEGERALESVTAPVYRGAVQAAFAEAAGMTWGQPGVDSLRSKLKSRQGDLQLSIAAADSVVKETIRKLALQSLERALSALRSGRVG----SADEEVLQSISEVFRIREAAALLMQ 1221
PPGLVWR GVKGMVPL IGLS+TPSRYLA R AGG VLA AANV+RQA VATRKRQAP+ALL L+R+EGAG VTREQ LV L EK+FVKG ELWESSR +YS++LAD V + + EDL RL+ LKWTLGL +++A+CH K + DA+SSVG PVSMDK++YLSERMFYQEG D GYL +CA+LRSQLGGM+QV+LLRKV QYAAP Y+ LLDA GRLD+ DR+WL RLRGIM VSQFEGERALESVTAPVYR A+QAAFAEA G+ G+PGVD+LR+KL+SRQ DLQLS+AAAD+ VKETIRKLAL SLE AL ALR+G S + +VL+S++EVF++REA +LL+Q
Sbjct: 139 PPGLVWRAGVKGMVPLATAIGLSVTPSRYLAVRAAGGAVLAIAANVLRQAVVATRKRQAPDALLELVRKEGAGNVTREQVGAGFWIVAHDPFRRPRVLPPPMILPTPLNNHWHAKLVGLAEKYFVKGPELWESSRLIYSSVLADAVAEHEPNTEDLDRLAMLKWTLGLSSQEVASCHHKVVEDAVSSVGAPVSMDKMLYLSERMFYQEGATDEGYLDECARLRSQLGGMSQVDLLRKVTQYAAPCYQR---------------------------------------------------------LLDANGRLDDRDRLWLSRLRGIMSVSQFEGERALESVTAPVYREALQAAFAEAVGLQRGEPGVDALRAKLRSRQADLQLSMAAADAAVKETIRKLALGSLEVALVALRNGGGDGPGDSPESDVLRSMTEVFQLREAVSLLVQ 528
BLAST of mRNA_H-elongata_contig17639.4612.1 vs. uniprot
Match: A0A836C8K3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8K3_9STRA) HSP 1 Score: 232 bits (592), Expect = 9.010e-65 Identity = 139/301 (46.18%), Postives = 181/301 (60.13%), Query Frame = 1
Query: 418 CHQKSIADALSSVGRPVSMDKVIYLSERMFYQEGTMD------------------------------------------AGYLGQCAKLRSQLGGMTQVELLRKVAQYAAPFYESVLENMVSRPESFSGEVLLRTRRRLGVSEVVAGGMHLDVYQSAIQASCFISLSEGTDGLLDAQGRLDEGDRIWLGRLRGIMGVSQFEGERALESVTAPVYRGAVQAAFAE---------AAGMTWGQPGVDSLRSKLKSRQGDLQLSIAAADSVVKETIRKLALQSLERALSALRSGRVGSADEEVL 1167
CH + +++ L S DK+++LSERM+Y++G D A YL +CA+LR+ G MTQVELLR+V+ YA+PFY+ +L ++ RP+ FS ++LLRTRRRLG+SEVVAGGMHLD YQ IQ G+L A G+LDE R L +LRG+MG++QFEGERALE+VTAPVYR +++ AFAE A + WG PGVD+LR LK RQ LQLS AAADSV+KETIRK A QSLE AL+A+R+ D +V+
Sbjct: 53 CHMEVVSELLRGHVE-ASTDKLLFLSERMYYRDGLADKASYALQTPRCSLVTHTYTHDTTPCRDSRVPFSAHPRRPVAAAAYLDECARLRAAFGSMTQVELLRRVSAYASPFYQDILAQLLERPDQFSADLLLRTRRRLGISEVVAGGMHLDNYQRHIQ------------GVLTANGKLDETHRASLAKLRGLMGITQFEGERALEAVTAPVYRESLERAFAEERHPAEWPQAMRLQWGDPGVDALRGTLKERQSQLQLSQAAADSVLKETIRKAAQQSLEAALAAVRNPPESGPDMDVV 340
BLAST of mRNA_H-elongata_contig17639.4612.1 vs. uniprot
Match: A0A7S2XWC5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWC5_9STRA) HSP 1 Score: 108 bits (270), Expect = 8.090e-22 Identity = 102/409 (24.94%), Postives = 188/409 (45.97%), Query Frame = 1
Query: 7 GLVWRLG-------VKGMVPLGAVIGLSLTPSRYLAARVAGGVVLATAANVVRQAAVATRKRQAPEALLGLLRREGAGEVT-------REQLVDLGEKFFVKGSELWESSRQLYSAILADTVTDQRASPEDLVRLSTLK-------WTLGLGHEDLAACHQKSIADALSSVGRPVS----------MDKVIYLSERMFYQEGTMDAGYLGQCAKLRSQLGGMTQVELLRKVAQYAAPFYESVLENMVSRPESFSGEVLLRTRRRLGVSEVVAGGMHLDVYQSAIQASCFISLSEGTDGLLDAQGRLDEGDRIWLGRLRGIMGVSQFEGERALESVTAPVYRGAVQAAFAEAAGMT-WGQPGVDSLRSKLKSRQGDLQLSIAAADSVVKETIRKLALQSLERALSALRSG 1137
GL R+G VK P+ + +G L PSR+L ++ GGV + ++ + R++ A + L+ + + L + + + +L +Y LA T+ + +L +K T+G H ++A + + +++ P S +DK ++L++R+F Q + G Q ++ + + ++V + A PFY + LE + PES S ++L++ R+ LG+S + A MHL+ Y + IQ +L+ +G L + D L +LRG++ +SQFEG+R+LE+ TAP+YR V E T + ++L+ R+ +L + A ++VVKET+R++ + A++ LR G
Sbjct: 123 GLFERVGPRFSVAAVKAFTPIASALGFMLMPSRHLPVKLLGGVAGLYVGRLGKKVLLRARRQAAKLGIAKLVLLPSTEDQDPILSASESSPIQKLLDSYGMAMDDLESYLGDIYELCLAQTMRTDEVKMGVVGKLGMVKRALQLSPQTVGQAHYNVAQQVVDRVEEMVAAASDPSSPSAPKHARHLVDKFLFLTDRVFDQH--LAPGDRTQELARVLEVLELDAAKAEKRVLEVAVPFYRNHLEAALRSPESTSADMLIKIRKSLGISSLSATPMHLEGYSAKIQR------------MLE-RGELTDQDLGTLAKLRGMLSISQFEGDRSLEAFTAPLYREVVTDVIEEMIAQTKLPDHLLKQYLARLEERRQELHMPSQAGENVVKETLRRVLQGPFDEAVNLLRRG 516
BLAST of mRNA_H-elongata_contig17639.4612.1 vs. uniprot
Match: B8BS77_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BS77_THAPS) HSP 1 Score: 107 bits (266), Expect = 3.280e-21 Identity = 91/300 (30.33%), Postives = 143/300 (47.67%), Query Frame = 1
Query: 4 PGLVWRLGVKGMVPLGAVIGLSLTPSRYLAARVAGGVVLATAANVVRQAAVATRKRQA-PEALLGLLRREGAGEVT-REQLVDLGEKFFVKGSELWESSRQLYSAILADTVTDQRASPEDLVRLSTLKWTL-------GLGHEDLAACHQKSIA-----DALSSVGRP--VSMDKVIYLSERMFYQEGTMDAGYLGQCAKLRSQLGGMTQVELLRKVAQYAAPFYESVLENMVSRPES--FSGEVLLRTRRRLGVSEVVAGGMHLDVYQSAIQASCFISLSEGTDGLLDAQGRLDEGDRI 849
P +V +GV + PL ++G ++TPSR LAAR GGVV A A V ++A+ R+A P A+ + G + + + L E + V + +YS L + +L LS+L+ L G GH D A + I D L P +S+DK+++LSER F Q G D + + +++ LGG+ E + +V A PFYE L + S+ ES S ++L R R LG+ E A MH++ + ++ +S E +G D + DEG+R+
Sbjct: 102 PKMVKLVGVAAL-PLSYIVGAAMTPSRRLAARAVGGVVAAVTAGGVGKSALEEDVRKACPAAIAQRVLDLGLDDANIADGIKRLQEDYGVDDEDFATMCTNVYSVYLVGMAKNPLTKTAELKELSSLRNALDLDNQQTGQGHADAAVQFYRDILRYTTEDELDDEDHPDRISLDKLLFLSERAFRQGGETDEAFTFEFSRVAKNLGGIEMEEAMDRVRDVALPFYERALSSTRSKLESGAVSSDMLTRARATLGIDEADAKDMHIEAFGKEVRVQLGLS-EEDDEG--DEELDYDEGNRL 397
BLAST of mRNA_H-elongata_contig17639.4612.1 vs. uniprot
Match: A0A1Z5J5X5_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J5X5_FISSO) HSP 1 Score: 74.7 bits (182), Expect = 1.200e-10 Identity = 80/344 (23.26%), Postives = 147/344 (42.73%), Query Frame = 1
Query: 13 VWRLGVKGMVPLGAVIGLSLTPSRYLAARVAGGVVLATAANVVRQAAVATRKRQAPEALLGLLRREGAGEVTREQLV--DLGEKFFVKGSELWESSRQLYSAILADTVTDQ-RASPEDLVRLSTLKWTLGLGHEDLAACHQKSIAD------------ALSSVGRP--VSMDKVIYLSERMFYQEGTMDAGYLGQCAKLRSQLGGMTQVELLRKVAQYAAPFYESVLENMVSR--PESFSGEVLLRTRRRLGVSEVVAGGMHLDVYQSAIQASCFISLSEGTDGL---------LDAQGRLDEGDRI-WLGRLRGIMGVSQFEGERALESVTAPVYRGAVQAAF 957
+++L +P+ A++G L PSR +AA AG +V A V + + A AL + G +VT+ Q D+ + F + +L ++Y++ L V Q A ++ L LK L L + + H + A+ L P ++MDK+++LSER ++ + + ++ +G +T + +VA PFY L++ S+ + S ++L R R LG+ E VA MH+ + ++ + + D LD + + L LR I+G+S+ + + + S +P+Y+ AA
Sbjct: 90 LFKLASYASIPVSALLGFGLVPSRRIAAHAAGALVTGIAGAVGKSRLDVLTQSGAKPALAQAIVDAGLEDVTKTQAAVRDVQDSFGLSDEDLEVLCTEIYASYLHGMVKFQPTAKTSEIKELQKLKQALSLQNMAVGEAHATAAAEWYRQTCLFTPTEELEDPKHPDRLAMDKLLFLSERALSEDSPQAFNF--EMTRVAKAVG-LTLPVAMERVASVVEPFYHRALQSTRSKLGTNAVSSDMLKRARETLGIKEEVAADMHVFTFNQEVRVCLGLPERKMNDXXXXXXXXAMPLDLSSLKFSDEALNRLDSLRDILGLSEMDMDYEIISEASPLYQTTALAAM 430
BLAST of mRNA_H-elongata_contig17639.4612.1 vs. uniprot
Match: A0A813I304_POLGL (Hypothetical protein (Fragment) n=4 Tax=Polarella glacialis TaxID=89957 RepID=A0A813I304_POLGL) HSP 1 Score: 72.4 bits (176), Expect = 6.410e-10 Identity = 95/366 (25.96%), Postives = 164/366 (44.81%), Query Frame = 1
Query: 40 VPLGAVIGLSLTPSRYLAARVAG--GVVLATAANVVRQAAVATRKRQAPEALLGLLRREGAGE-VTREQLVDLGE----KFFV----KGSELWESSR--QLYSAILADTVTDQRASPEDLVRLSTLKWTLGLGHEDLAACHQKS----IADALSSV-GRP--VSMDKVIYLSERMFYQEGTMDAGYLGQCAKLRSQLGGMTQVELLRKVAQYAAPFYESVLENMVSRPESFSGEVLLRTRRRLGVSEVVAGGMHLDVYQSAIQASCFISLSEGTDGLLDAQGRLDEGDRIWLGRLRGIMGVSQFEGERALESVTAPVYRGAVQAAFAEAAGMTWGQPGVDSLRSKLKSRQGDLQLSIAAADSVVKE 1077
+P ++ LTP LA +AG G+V+ +A + A +K A A+ LL + A E V+ E+L L + +F V K SE WE +LY A+L + + DL L LK L L + H+ + ++ S + G P V+ DK+++LSER F EG +AG + +L Q+ + + E +VA + Y+ L + + ++ + E L + GV+ A M+ + Y+ I+ + G L AQG+ + L R RG++ + + + +V +P+ V+A G + + L +R+ +L LS +AA S V++
Sbjct: 149 LPAFSLAAAQLTPGSQLARGLAGALGLVIGSATGAFLKTA---KKDAATAAIAQLLAQHMASEAVSVEELRSLVQAQRKRFGVPADSKASEQWEDGALIELYEALLNNLLNGPEHDAGDLPALQRLKAALELDGIVVGNAHRHAAQLLVSRGYSGLEGEPMRVATDKLLFLSERAFSDEGPEEAGVY-EMGRL-CQVLNIAEREARERVAAVSKALYQQSLSAVADKVDAHTAEALAGAKLAFGVAGEEAERMNTETYKQ-------IAADQLAGGRLAAQGK------VTLERARGVLQLGERAATASFVAVASPILLKDVEALATRIQGGATAAENLKEAAASLVTRRDELGLSASAAFSCVED 496
BLAST of mRNA_H-elongata_contig17639.4612.1 vs. uniprot
Match: A0A7S2UAH8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAH8_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 8.180e-8 Identity = 70/290 (24.14%), Postives = 120/290 (41.38%), Query Frame = 1
Query: 4 PGLVWRLGVKGMVPLGAVIGLSLTPSRYLAARVAGGVVLATAANVVRQAAVATRKRQAPEALLGLLRREGAGEVTREQLVD----LGEKFFVKGSELWESSRQLYSAILADTVTDQR-ASPEDLVRLSTLKWTLGLGHEDLAACHQKSIADA------------LSSVGRP--VSMDKVIYLSERMFYQEGTMDAGYLGQCAKLR--------------SQLGGMTQVELLRKVAQYAAPFYESVLENMVSRPES--FSGEVLLRTRRRLGVSEVVAGGMHLDVYQSAIQ 768
PGL+ +L VP+ AV+G +TPSR LAA G +V + + + A A+ + G + L + + ++ + + +Y + L V + A +L L LK LGLG+ + H + D L+ V P +++DK ++LSER F G + + +++ + +GG E++ +VA A PFY L + ++ +S +VL R R +G+SE VA MH+ I+
Sbjct: 93 PGLI-KLASLASVPVSAVVGFVMTPSRRLAAHTVGSIVTGSLGAIGKSRLDMAASAAALPAIAQAVIDHGLDASSEASLTSAIASVKSTYNMEDGDFEAACGDIYKSYLIGMVKNNPIAKTAELKELVRLKDVLGLGNLLVGEAHATAAKDLYRQTCLFTPEEELADVDHPDRMALDKFLFLSERTFVGNGETPEAFSYEMSRIAKAFDIKITKSNAAAADVGGAMS-EIMERVAHVAEPFYRRALVSTRAKLDSGAVQPDVLKRARATVGISEEVARDMHIQALTEEIR 380 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17639.4612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17639.4612.1 >prot_H-elongata_contig17639.4612.1 ID=prot_H-elongata_contig17639.4612.1|Name=mRNA_H-elongata_contig17639.4612.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=407bp PPGLVWRLGVKGMVPLGAVIGLSLTPSRYLAARVAGGVVLATAANVVRQAback to top mRNA from alignment at H-elongata_contig17639:802..4597- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17639.4612.1 ID=mRNA_H-elongata_contig17639.4612.1|Name=mRNA_H-elongata_contig17639.4612.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3796bp|location=Sequence derived from alignment at H-elongata_contig17639:802..4597- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17639:802..4597- >mRNA_H-elongata_contig17639.4612.1 ID=mRNA_H-elongata_contig17639.4612.1|Name=mRNA_H-elongata_contig17639.4612.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2442bp|location=Sequence derived from alignment at H-elongata_contig17639:802..4597- (Himanthalia elongata Himel1 dioecious)back to top |