mRNA_H-elongata_contig176352.4611.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig176352.4611.1
Unique NamemRNA_H-elongata_contig176352.4611.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig176352.4611.1 vs. uniprot
Match: D7FY89_ECTSI (Novel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY89_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 8.290e-24
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 MLGASSCLPAVEYFCLYAGTAILFDFFLQVTAFVALLAMDAKRQKAGKFDWFCCFTSKK 177
            +LG+ + LPAVEYFCLYA TAILFDFFLQ+TAFVALL MDA RQKAGK DW CCFTSKK
Sbjct:  408 LLGSLTSLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGKIDWCCCFTSKK 466
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BLAST of mRNA_H-elongata_contig176352.4611.1 vs. uniprot
Match: D7FY98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY98_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.130e-23
Identity = 50/59 (84.75%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 MLGASSCLPAVEYFCLYAGTAILFDFFLQVTAFVALLAMDAKRQKAGKFDWFCCFTSKK 177
            MLG+ S LPAVEYFCLYAGTAILFDFFLQ+TAFVALL MDA RQKAGK D  CCFTSKK
Sbjct:  385 MLGSMSSLPAVEYFCLYAGTAILFDFFLQMTAFVALLTMDANRQKAGKIDSCCCFTSKK 443
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BLAST of mRNA_H-elongata_contig176352.4611.1 vs. uniprot
Match: D8LCK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK4_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.360e-22
Identity = 48/61 (78.69%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 MLGASSCLPAVEYFCLYAGTAILFDFFLQVTAFVALLAMDAKRQKAGKFDWFCCFTSKKLP 183
            +LGA S LPAV+YFCLYA TAILFDFFLQ+TAFVALL MDA RQKAGK D  CCFTS K P
Sbjct:  288 LLGAQSSLPAVQYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGKIDCCCCFTSPKHP 348
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BLAST of mRNA_H-elongata_contig176352.4611.1 vs. uniprot
Match: A0A6H5JGQ4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ4_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.720e-19
Identity = 48/63 (76.19%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 MLGASSCLPAVEYFCLYAGTAILFDFFLQVT----AFVALLAMDAKRQKAGKFDWFCCFTSKK 177
            MLG  S LPAVEYFCLYAGTAILFDFFL  +    AFVALL MDA RQKAGK D  CCFTSKK
Sbjct:   65 MLGRVSSLPAVEYFCLYAGTAILFDFFLPESKNNRAFVALLTMDANRQKAGKIDSCCCFTSKK 127
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BLAST of mRNA_H-elongata_contig176352.4611.1 vs. uniprot
Match: D7FY95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY95_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.140e-18
Identity = 44/59 (74.58%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:    1 MLGASSCLPAVEYFCLYAGTAILFDFFLQVTAFVALLAMDAKRQKAGKFDWFCCFTSKK 177
            +LG+ + LPAVEYFCLYA TAILFDFFLQ+TAFVALL MDA RQKAGK D     TSKK
Sbjct:  436 LLGSMTSLPAVEYFCLYAATAILFDFFLQMTAFVALLTMDANRQKAGKIDCCXXLTSKK 494
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BLAST of mRNA_H-elongata_contig176352.4611.1 vs. uniprot
Match: A0A835YJJ3_9STRA (Patched family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJJ3_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.680e-16
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 MLGASSCLPAVEYFCLYAGTAILFDFFLQVTAFVALLAMDAKRQKAGKFDWFCC 162
            MLGA+S LPA+EYFC+YAG A+LFDF LQV +F+ALLA D  RQ+A K+D  CC
Sbjct:  430 MLGANSTLPAIEYFCIYAGVAVLFDFLLQVPSFIALLAYDTDRQRARKYDLLCC 483
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BLAST of mRNA_H-elongata_contig176352.4611.1 vs. uniprot
Match: A0A1Z5KZL9_ORNMO (SSD domain-containing protein (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5KZL9_ORNMO)

HSP 1 Score: 68.2 bits (165), Expect = 8.630e-14
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:   22 LPAVEYFCLYAGTAILFDFFLQVTAFVALLAMDAKRQKAGKFDWFCCFTSKKLP 183
            +PAV+ F LYAG A+L DF LQVT FVALL +DAKRQ+AG+ D  CC+ + K P
Sbjct:    1 MPAVKTFALYAGVALLIDFLLQVTCFVALLTLDAKRQEAGRLD-VCCWATTKSP 53
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BLAST of mRNA_H-elongata_contig176352.4611.1 vs. uniprot
Match: A0A8C4RH22_ERPCA (NPC1 like intracellular cholesterol transporter 1 n=2 Tax=Polypteridae TaxID=8289 RepID=A0A8C4RH22_ERPCA)

HSP 1 Score: 73.2 bits (178), Expect = 1.180e-13
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    4 LGASSCLPAVEYFCLYAGTAILFDFFLQVTAFVALLAMDAKRQKAGKFDWFCCFTSK 174
            LGA S +PAV+ F LYA  A+LFDF LQ+TAFVALL++DAKRQ+A ++D  CC  +K
Sbjct:  771 LGALSTMPAVKTFALYAALAVLFDFLLQMTAFVALLSLDAKRQEAMRYDVVCCIRAK 827
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BLAST of mRNA_H-elongata_contig176352.4611.1 vs. uniprot
Match: A0A2H1CV51_FASHE (SSD domain-containing protein n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A2H1CV51_FASHE)

HSP 1 Score: 72.4 bits (176), Expect = 2.190e-13
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    7 GASSCLPAVEYFCLYAGTAILFDFFLQVTAFVALLAMDAKRQKAGKFDWFCCFTSKKLP 183
            G+ + +PAV  F LYAG AILF+F LQ+ AFVALLA+DA+R+ A +FD FCCF  +  P
Sbjct:  133 GSLTSMPAVRAFALYAGVAILFNFLLQIFAFVALLALDARRRAANRFDVFCCFGLRPTP 191
[Close]
BLAST of mRNA_H-elongata_contig176352.4611.1 vs. uniprot
Match: A0A821TLU1_9NEOP (Hypothetical protein n=15 Tax=Pieris TaxID=7115 RepID=A0A821TLU1_9NEOP)

HSP 1 Score: 72.4 bits (176), Expect = 2.200e-13
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    4 LGASSCLPAVEYFCLYAGTAILFDFFLQVTAFVALLAMDAKRQKAGKFDWFCCFTSKK 177
            LGA S +PAV  F LYAG A+L DF LQVT FVALLA+D +RQ A ++D FCC +  K
Sbjct:  727 LGALSDMPAVRAFALYAGAALLVDFLLQVTCFVALLAIDTRRQNANRYDIFCCLSGTK 784
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176352.4611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY89_ECTSI8.290e-2481.36Novel protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
D7FY98_ECTSI1.130e-2384.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCK4_ECTSI1.360e-2278.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGQ4_9PHAE1.720e-1976.19Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FY95_ECTSI1.140e-1874.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YJJ3_9STRA1.680e-1666.67Patched family-domain-containing protein n=1 Tax=T... [more]
A0A1Z5KZL9_ORNMO8.630e-1461.11SSD domain-containing protein (Fragment) n=1 Tax=O... [more]
A0A8C4RH22_ERPCA1.180e-1361.40NPC1 like intracellular cholesterol transporter 1 ... [more]
A0A2H1CV51_FASHE2.190e-1357.63SSD domain-containing protein n=1 Tax=Fasciola hep... [more]
A0A821TLU1_9NEOP2.200e-1360.34Hypothetical protein n=15 Tax=Pieris TaxID=7115 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig176352contigH-elongata_contig176352:190..1299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue9.7e-20
Seed eggNOG ortholog2880.D7FY89
KEGG koko:K07752
EggNOG free text desc.molting cycle, collagen and cuticulin-based cuticle
EggNOG OGsKOG1934@1,KOG1934@2759
EC3.4.17.22
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categorysignal anchor
Exons2
Model size183
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930020.9469678-CDS-H-elongata_contig176352:189..2761622930020.9469678-CDS-H-elongata_contig176352:189..276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176352 190..276 +
1691679249.1843781-CDS-H-elongata_contig176352:189..2761691679249.1843781-CDS-H-elongata_contig176352:189..276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176352 190..276 +
1622930020.9696732-CDS-H-elongata_contig176352:1203..12991622930020.9696732-CDS-H-elongata_contig176352:1203..1299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176352 1204..1299 +
1691679249.1953878-CDS-H-elongata_contig176352:1203..12991691679249.1953878-CDS-H-elongata_contig176352:1203..1299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176352 1204..1299 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig176352.4611.1prot_H-elongata_contig176352.4611.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig176352 190..1299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig176352.4611.1

>prot_H-elongata_contig176352.4611.1 ID=prot_H-elongata_contig176352.4611.1|Name=mRNA_H-elongata_contig176352.4611.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MLGASSCLPAVEYFCLYAGTAILFDFFLQVTAFVALLAMDAKRQKAGKFD
WFCCFTSKKLP
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mRNA from alignment at H-elongata_contig176352:190..1299+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig176352.4611.1 ID=mRNA_H-elongata_contig176352.4611.1|Name=mRNA_H-elongata_contig176352.4611.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1110bp|location=Sequence derived from alignment at H-elongata_contig176352:190..1299+ (Himanthalia elongata Himel1 dioecious)
ATGCTGGGTGCCTCAAGCTGCCTCCCCGCGGTGGAATATTTCTGCCTCTA
TGCCGGTACTGCCATACTCTTCGACTTCTTCCTGCAGGTACGCTGCTGAT
GGGATCGCGGTATATTTCTCCGCCCTGCCCTCACACGCCCATACCCGAAA
TTGTTTTCGCTTTTTACCTTATCCTAAACTTGTTCGTCTACAACCCTTTT
GAAGTTTCGTCTCTTCTCTGGGTGCTGGTTGGCACTTCCACCTTCCTCGC
AGAATACTTTATCAGCGCCGATACCTAGGGTTCTAGATGATAACTTTACC
GCTGATATTTACTGTGGTGTTTATCCACGGTAGCACCTAGAACGGATATC
TGCGTCCTTCGGCTACCGTTTAGCATATACCGTTGCTCACTGTGCAATTC
AGAAGAAAACCGCGTTTTTTTTACAGTGCCAACTCATCCTTACCGCCGCC
GTACCGTTTCCTTACCGCCAACATTTCAGGGCACTCGCAGTACAATGTAC
ACATCACTACAGCCATAAACGGGCCTGTTTAACAAGAATATACTGTAACC
CCGACAAAATAAAAAAATATCAAAATATGGAACTCCTCGATTTTTACTGT
CACCGTACCTTGGAGTTACCGCGGAGTTGGGTACCGTACCGTCAACACCG
TGGAATCTAGTTACGATGCACGTGAACCATATTGTTACTGCGTCATTTCC
TTACCATCCCAAATGCTACCGTCACAAGAATCGCTACCGTGTAGAGCCCT
CATATTTTGATCGTTCGATCCCTCTTATTGGTCCCTTCGGACAGTCCACC
AAGAGTGTGGGCTATGTTTCGGGGCGTGGAGTACGGGGATGGGAGATAGT
TCCTGATGGCATATAGCAGTCAATTGCTAATAAAAGCAAAAGCAGTATAT
TTTATTTATACGCCACCATTGCCTTGGTGAGTAGCACTATAAAAACTCTG
CTTTTCGCGCCCTTTTCTGATGCTAACATTCCGTACCGCTGCGCTTTGCT
GTCGTTCATAACAGGTGACCGCTTTCGTGGCGTTGCTGGCGATGGACGCC
AAGCGACAGAAGGCCGGCAAGTTCGATTGGTTTTGTTGCTTCACGAGTAA
GAAGCTTCCC
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Coding sequence (CDS) from alignment at H-elongata_contig176352:190..1299+

>mRNA_H-elongata_contig176352.4611.1 ID=mRNA_H-elongata_contig176352.4611.1|Name=mRNA_H-elongata_contig176352.4611.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig176352:190..1299+ (Himanthalia elongata Himel1 dioecious)
ATGCTGGGTGCCTCAAGCTGCCTCCCCGCGGTGGAATATTTCTGCCTCTA
TGCCGGTACTGCCATACTCTTCGACTTCTTCCTGCAGATGCTGGGTGCCT
CAAGCTGCCTCCCCGCGGTGGAATATTTCTGCCTCTATGCCGGTACTGCC
ATACTCTTCGACTTCTTCCTGCAGGTGACCGCTTTCGTGGCGTTGCTGGC
GATGGACGCCAAGCGACAGAAGGCCGGCAAGTTCGATTGGTTTTGTTGCT
TCACGAGTAAGAAGCTTCCCGTGACCGCTTTCGTGGCGTTGCTGGCGATG
GACGCCAAGCGACAGAAGGCCGGCAAGTTCGATTGGTTTTGTTGCTTCAC
GAGTAAGAAGCTTCCC
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