mRNA_H-elongata_contig176330.4610.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig176330.4610.1
Unique NamemRNA_H-elongata_contig176330.4610.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig176330.4610.1 vs. uniprot
Match: V5GT76_ANOGL (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=V5GT76_ANOGL)

HSP 1 Score: 219 bits (557), Expect = 9.800e-66
Identity = 125/299 (41.81%), Postives = 179/299 (59.87%), Query Frame = 1
Query:    1 KYLLGMHIDQDPVSRTLTLSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKSGAGKAAGATGAGKEALPLEGEEQRE-----YRELVGSLLFLARCTRPDIAFPVMMLSRAMQSPTRGHMAAAKRVLKYLRGTTDYAIRYRRKA--DGLCLHGFVDADYGNDRVTRRSVTGYVFFLASGPISWSSKMQSLVAVSTVESEYIALGEAAKEAIYLRLLLDSLRVPQVGPTELREDNQGAIDLAANEGVFSARTKHIDIRHHHVRDLITNGVVSIAKVSTADQVADILTKGLERVTFTR 876
            K +LG  I +D V++ + + Q+ Y  ++L +F MD++NP  T       ++                KE LP+  E +R+     Y+E VGSLLF ++ +RPDI + +  +SR  Q+P   H +A KR+ +YL+GT  Y + + RK   D   + G+ DAD+G+D   RRSVTGY+F     PISW++K Q  VA+ST ESEY+A+  A +EAI+LR L   L      PT L  DNQGA  LA N G + ARTKHIDIRHH +++ I NG++SI  VST+  +AD LTK L++V F +
Sbjct:   57 KKILGFQITRDRVNKKIWIDQKDYLEKVLRKFNMDQSNPVDTPMSAGEKLI----------------KEQLPIGDERKRKMENIPYQEAVGSLLFASQISRPDICYAISCVSRFNQNPGPAHWSAVKRIFRYLKGTIHYRLEFSRKTEIDNSDIIGYCDADWGSDPNDRRSVTGYIFLKNGSPISWNTKKQPTVALSTTESEYMAMSSAVQEAIWLRGLSYELSA-NTKPTLLYVDNQGAQKLALN-GTYQARTKHIDIRHHFLKEKIDNGIISIKYVSTSYMLADSLTKPLDKVKFLK 337          
BLAST of mRNA_H-elongata_contig176330.4610.1 vs. uniprot
Match: A0A0C3AUA9_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AUA9_9AGAM)

HSP 1 Score: 215 bits (548), Expect = 4.590e-65
Identity = 124/301 (41.20%), Postives = 180/301 (59.80%), Query Frame = 1
Query:    4 YLLGMHIDQDPVSRTLTLSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKSGAGKAAGATGAGKEALPLEGEEQRE-----YRELVGSLLFLARCTRPDIAFPVMMLSRAMQSPTRGHMAAAKRVLKYLRGTTDYAIRYRRKADGLCLHGFVDADYGNDRVTRRSVTGYVFFLASGPISWSSKMQSLVAVSTVESEYIALGEAAKEAIYLRLLLDSLRVPQVGPTELREDNQGAIDLAANEGVFSARTKHIDIRHHHVRDLITNGVVSIAKVSTADQVADILTKGLERVTFTRLREQI 891
            +LLGM I +D  ++T++LSQ  Y   ++ RFG+D A PA T   F   V  ++              +  P   +E RE     YRELVGSL++L   TRPDI++ V +LS+ + +P R H  AAKRVL++L+G+ D+ +     +D   L  + DAD+  D   R+S  GYVF +  G +SWSSK Q  VA+S++E+EY+AL +AAKEAI+++  L  + V   GP  +  DNQG++ LA N  VF ARTKHIDI+HH +RD + +G + +  +ST D +AD LTK L R    R   ++
Sbjct:   20 WLLGMRITRDRSAKTISLSQSAYIDSLVTRFGLDNATPAAT--PFVQGVALTR--------------DQCPANDDEVREMANVPYRELVGSLMYLRVATRPDISYHVSVLSKFLNNPGRAHWEAAKRVLRFLKGSRDWKLTLGGFSD---LVAYSDADWAGDHDDRKSTGGYVFLVGRGAVSWSSKRQPTVALSSLEAEYMALTQAAKEAIWIKSYLADIDVHVHGPVTVFGDNQGSLALAKNP-VFHARTKHIDIQHHFIRDCVASGTIFVDYISTHDMLADGLTKPLSRDKHLRFAYEL 300          
BLAST of mRNA_H-elongata_contig176330.4610.1 vs. uniprot
Match: A0A6H5IY10_9HYME (Uncharacterized protein (Fragment) n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IY10_9HYME)

HSP 1 Score: 213 bits (543), Expect = 1.750e-63
Identity = 124/292 (42.47%), Postives = 165/292 (56.51%), Query Frame = 1
Query:   10 LGMHIDQDPVSRTLTLSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKSGAGKAAGATGAGKEALPLEGEEQREY--RELVGSLLFLARCTRPDIAFPVMMLSRAMQSPTRGHMAAAKRVLKYLRGTTDYAIRYRRKADGLCLHGFVDADYGNDRVTRRSVTGYVFFLASGPISWSSKMQSLVAVSTVESEYIALGEAAKEAIYLRLLLDSLRVPQVGPTELREDNQGAIDLAANEGVFSARTKHIDIRHHHVRDLITNGVVSIAKVSTADQVADILTKGLERVTFTRL 879
            LG+ I++D     + L Q +YA +IL RF M  ANP  T   F+     +                  P E      Y  RE +GSL+FL   TRPD++F V  LSR ++   R H  A KRV++Y++GT ++ I Y+R   G  L GF D+D+  D  TRRS TGY+F LASGPI+WS++ QS VA+S+ E+EY+A   A KE I+LR L+  L      PT L  DN  AI L  N  VF  +TKHI+++HH VR+   +GVV I  V +  Q+ADILTK L RV    L
Sbjct:   30 LGIQIERDRERGQMHLCQSQYAIKILKRFNMFDANPVST--PFEKGTCLTS-----------------PTESPSSTNYPYREAIGSLMFLTNVTRPDLSFSVNYLSRFLEKHARNHCEALKRVMRYIKGTINHGIVYKRSNGGDKLLGFSDSDFAGDADTRRSTTGYIFMLASGPITWSTQRQSSVALSSTEAEYVAAAAATKEIIWLRKLMQDLGFHDAKPTTLHVDNMSAIQLIRNP-VFHKKTKHIEVKHHFVREKFQSGVVEIQHVPSESQLADILTKALPRVQHQNL 301          
BLAST of mRNA_H-elongata_contig176330.4610.1 vs. uniprot
Match: A0A146HFR8_MYCCL (Polyprotein (Fragment) n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146HFR8_MYCCL)

HSP 1 Score: 214 bits (544), Expect = 2.030e-63
Identity = 124/299 (41.47%), Postives = 168/299 (56.19%), Query Frame = 1
Query:    1 KYLLGMHIDQDPVSRTLTLSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKSGAGKAAGATGAGKEALPLEGEEQREYRELVGSLLFLARCTRPDIAFPVMMLSRAMQSPTRGHMAAAKRVLKYLRGTTDYAIRYRRKADGLCLHGFVDADYGNDRVTRRSVTGYVFFLASGPISWSSKMQSLVAVSTVESEYIALGEAAKEAIYLRLLLDSLRVPQVGPTELREDNQGAIDLAANEGVFSARTKHIDIRHHHVRDLITNGVVSIAKVSTADQVADILTKGLERVTFTRLREQILG 897
            K +LGM I Q+P   ++ LSQ  YA  +L   GM++AN   T  D  N  +   +      G T             +  Y   +G L++LA  TRPD+AF V  LS+    P   HM+A KRV +YLRGTT   I +R   D   LH F DAD+GND   RRS++GY+ FL + P+SW+S+ Q  VA+ST+E+EY+A      E I+LR L   L +    PT +  DNQ AI  A N  +F AR+KHID+RHH VR+ + +  V +   ++ D +ADILTK L R  F  LR+Q LG
Sbjct:   95 KQILGMEISQNPTDGSIRLSQANYASRVLESVGMEKANAVQTPLD-PNVKLTPLAKGDPRIGDTAF-----------RHGYLSGIGKLMYLAVATRPDLAFAVQHLSQFSIRPGPEHMSALKRVFRYLRGTTSLGIAFRGSGD---LHIFSDADWGNDNTDRRSISGYLSFLGASPLSWASRKQPTVALSTMEAEYMAAARTTCEIIWLRQLASELGISVEAPTPIHIDNQSAIKFAENP-MFHARSKHIDMRHHFVRERVASNEVKLVHCASEDNLADILTKPLPRPQFVALRDQFLG 377          
BLAST of mRNA_H-elongata_contig176330.4610.1 vs. uniprot
Match: A0A146LSQ0_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Lygus hesperus TaxID=30085 RepID=A0A146LSQ0_LYGHE)

HSP 1 Score: 212 bits (539), Expect = 4.600e-63
Identity = 119/290 (41.03%), Postives = 173/290 (59.66%), Query Frame = 1
Query:    4 YLLGMHIDQDPVSRTLTLSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKSGAGKAAGATGAGKEALPLEGEEQRE--YRELVGSLLFLARCTRPDIAFPVMMLSRAMQSPTRGHMAAAKRVLKYLRGTTDYAIRYRRKADGLCLHGFVDADYGNDRVTRRSVTGYVFFLASGPISWSSKMQSLVAVSTVESEYIALGEAAKEAIYLRLLLDSL-RVPQVGPTELREDNQGAIDLAANEGVFSARTKHIDIRHHHVRDLITNGVVSIAKVSTADQVADILTKGLERV 864
            Y LGMHI++DP++ T+ + Q++Y   +L RF M    P  T  +    ++++                    EG E  +  Y+  VGSL++ A CTRPD++F V  LSR   +P   H +  KRVL+YL+GT D  + +++  D   LHG+ D+DY +D + R SVTGYVF L+SG ISWSSK Q  VA ST E+EY+++  A +EA++LR++L  L  +      +++ DN+GA+DL  N     +RTKHID+ HH +R+ + NG VSI K ST   VAD+LTK L  V
Sbjct:   52 YCLGMHIERDPITGTICVDQKRYIESVLKRFHMSDCKPQGTPMEHGLKLMKN--------------------EGSECADVPYQTAVGSLMYAANCTRPDLSFAVGALSRFNANPNMTHWSYVKRVLRYLQGTCDGKLVFKKTEDP--LHGYADSDYADDPIDRISVTGYVFLLSSGAISWSSKKQPTVARSTTEAEYMSISNATQEALWLRMVLTELGELKPDMKIDIKCDNKGAVDLTKNS-THHSRTKHIDVHHHFIREAVKNGQVSITKESTEFMVADLLTKALPGV 318          
BLAST of mRNA_H-elongata_contig176330.4610.1 vs. uniprot
Match: A0A0J7N0A8_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7N0A8_LASNI)

HSP 1 Score: 208 bits (529), Expect = 1.610e-62
Identity = 118/282 (41.84%), Postives = 171/282 (60.64%), Query Frame = 1
Query:   49 LTLSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKSGAGKAAGATGAGKEALPLEGEEQRE-----YRELVGSLLFLARCTRPDIAFPVMMLSRAMQSPTRGHMAAAKRVLKYLRGTTDYAIRYRR-KADGL-CLHGFVDADYGNDRVTRRSVTGYVFFLASGPISWSSKMQSLVAVSTVESEYIALGEAAKEAIYLRLLLDSLRVPQVG-PTELREDNQGAIDLAANEGVFSARTKHIDIRHHHVRDLITNGVVSIAKVSTADQVADILTKGLERVTF 870
            + L Q+ Y  +I+ ++GM+   P  T  D  N + R                + +P   EE++E     YRE VG LL++++ TRPD+A+ V  +SR MQ+  R H  A KR+L+YLRGT DY +++ + +A G   + G+ DAD+ N+  TRRSVTG +F    GPI+W SK+QS VA+ST E+EY+AL    +EA++LR L+  L+   V  PTEL  DN+GAIDL  N G + +RTKHIDIRHH +R++  N  + +  + T + +AD LTKGL    F
Sbjct:    2 ICLDQKSYIQKIIKKYGMEDCKPTSTPYDPSNKLSR----------------DMMPKNEEEEKEMKNVPYREAVGGLLYISQGTRPDVAYAVSTVSRYMQNLGRNHWTAVKRILRYLRGTLDYRLQFGKDQAKGHENITGYCDADWANESDTRRSVTGNIFLFQGGPITWQSKLQSTVALSTTEAEYMALSAGCQEAMWLRALVRDLQPLLVSSPTELYNDNKGAIDLVKNGG-YRSRTKHIDIRHHFIREMNENSEIVVNYLPTTEMIADALTKGLYASKF 266          
BLAST of mRNA_H-elongata_contig176330.4610.1 vs. uniprot
Match: A0A6G0HFF8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HFF8_LARCR)

HSP 1 Score: 214 bits (545), Expect = 2.870e-62
Identity = 121/296 (40.88%), Postives = 172/296 (58.11%), Query Frame = 1
Query:    4 YLLGMHIDQDPVSRTLTLSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKSGAGKAAGATGAGKEALPLEGEEQREYRELVGSLLFLARCTRPDIAFPVMMLSRAMQSPTRGHMAAAKRVLKYLRGTTDYAIRYRRKADGLCLHGFVDADYGNDRVTRRSVTGYVFFLASGPISWSSKMQSLVAVSTVESEYIALGEAAKEAIYLRLLLDSLRVPQVGPTELREDNQGAIDLAANEGVFSARTKHIDIRHHHVRDLITNGVVSIAKVSTADQVADILTKGLERVTFTRLREQI 891
            Y+LG+ + QD  + ++ L Q+ Y   +L ++GMD+ANP  T  D  N  ++   G                        Y+ +VGSLL+ A  TRPDIA  V  +S+    P   HM A KR+L+YL+GT + A++Y+R ++   L GF DAD+  D+  RRS TG +F L  G +SW SK Q+ VA+ST E+EY+AL +AA+E  +L  LL  L +    PT + EDNQGAI +A N  V  +RTKHIDIR+H++R+ + NG + +    T D  ADILTK L +  F  LR +I
Sbjct:  228 YILGISVIQDKTNNSVYLHQKHYIEAVLQKYGMDKANPVTTPAD-ANVKLQKDDGVSNPV---------------NPGTYQSIVGSLLYAAMATRPDIAQAVSAVSKFNAKPNTAHMTAVKRILRYLKGTINLALKYQR-SESETLLGFSDADWAGDQDDRRSTTGNIFLLGGGAVSWLSKKQNTVALSTAEAEYVALSQAAQECTWLTRLLSDLGMDAT-PTVILEDNQGAIAIAKNP-VDHSRTKHIDIRYHYIRECVQNGQIQLQYCPTEDMKADILTKPLAKQKFEYLRREI 504          
BLAST of mRNA_H-elongata_contig176330.4610.1 vs. uniprot
Match: A0A177U140_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177U140_9BASI)

HSP 1 Score: 212 bits (540), Expect = 3.620e-62
Identity = 127/291 (43.64%), Postives = 168/291 (57.73%), Query Frame = 1
Query:    7 LLGMHIDQDPVSRTLTLSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKSGAGKAAGATGAGKEALPLEGEEQREYRELVGSLLFLARCTRPDIAFPVMMLSRAMQSPTRGHMAAAKRVLKYLRGTTDYAIRYRRKADGLCLHGFVDADYGNDRVTRRSVTGYVFFLASGPISWSSKMQSLVAVSTVESEYIALGEAAKEAIYLRLLLDSLRVPQVGPTELREDNQGAIDLAANEGVFSARTKHIDIRHHHVRDLITNGVVSIAKVSTADQVADILTKGLERVTFTRL 879
            +LG+ I +    R  T+SQ  Y  +IL R+GM    PA      K  +  +    G   G+    KE        + E+  LVG LL+LA+ TRPDIAF V  L+R M +P+  H  AAKRVL+YL GT D  +R+R   D   L G+ D+D+G D  TRRSV+GYVFFL   P++W SK+Q  V+VS+ E+EY+AL EA +EAI+   LL  L++   GP +L  DN GA  LA N      RTKHI I HH VRD   +G + + +V T D  AD++TK    VTF RL
Sbjct:  136 MLGIRIHRSTCGRVATMSQSGYVSQILQRYGMADCKPA------KTPMADAMKNLGPRVGSMATVKE--------RHEFAALVGCLLWLAQGTRPDIAFQVGKLARFMANPSPEHTDAAKRVLRYLAGTRDLCLRFRH-TDVAQLVGYADSDHGADPTTRRSVSGYVFFLYGNPVTWRSKLQDTVSVSSTEAEYVALSEATREAIWAIQLLQELKLHANGPVDLHTDNTGAEALARNPQSHQ-RTKHIRIHHHLVRDCNADGTIKVKRVHTDDNPADLMTK---TVTFARL 407          
BLAST of mRNA_H-elongata_contig176330.4610.1 vs. uniprot
Match: A0A392N1Z6_9FABA (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392N1Z6_9FABA)

HSP 1 Score: 208 bits (529), Expect = 1.370e-61
Identity = 119/297 (40.07%), Postives = 171/297 (57.58%), Query Frame = 1
Query:    1 KYLLGMHIDQDPVSRTLTLSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKSGAGKAAGATGAGKEALPLEGEEQREYRELVGSLLFLARCTRPDIAFPVMMLSRAMQSPTRGHMAAAKRVLKYLRGTTDYAIRYRRKADGLCLHGFVDADYGNDRVTRRSVTGYVFFLASGPISWSSKMQSLVAVSTVESEYIALGEAAKEAIYLRLLLDSLRVPQVGPTELREDNQGAIDLAANEGVFSARTKHIDIRHHHVRDLITNGVVSIAKVSTADQVADILTKGLERVTFTRLREQI 891
            +Y LG+ I Q  V   + + Q+KYA +IL RFGM+  N    C         +K   GK   AT               EYR+++G L++L    RPD+ F V +++R M+ PT  H+AAAKR+L+YL GT  + + Y++  +   L G+ D+DY  D   R+S +GYVF   SGPISWSSK Q++V +ST E+E++A    A +A++LR +LD L   Q   T +  DN  +I L+ N  V   R KHID+R H +RDL   G V +   ST +Q+ADI+TK L+  TF +LRE +
Sbjct:   22 RYFLGVEIKQ--VDNGILIYQQKYAQDILVRFGMENCN--TVCSPMIPGNKLTKDEGGKLVDAT---------------EYRQMIGCLMYLL-AIRPDLTFSVCLIARYMERPTELHLAAAKRILRYLXGTIGFGVWYKKVNERAELQGWTDSDYACDLDDRKSTSGYVFAFGSGPISWSSKKQAIVTLSTTEAEFVAAASCACQAVWLRRILDQLGKAQSNGTVIWCDNSSSIKLSRNP-VMHGRCKHIDVRFHFLRDLTKEGDVELKHCSTQEQLADIMTKALKLETFCKLREDL 297          
BLAST of mRNA_H-elongata_contig176330.4610.1 vs. uniprot
Match: A0A4Y9ZJA2_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZJA2_9AGAM)

HSP 1 Score: 221 bits (563), Expect = 1.420e-61
Identity = 127/292 (43.49%), Postives = 168/292 (57.53%), Query Frame = 1
Query:    1 KYLLGMHIDQDPVSRTLTLSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKSGAGKAAGATGAGKEALPLEGEEQREYRELVGSLLFLARCTRPDIAFPVMMLSRAMQSPTRGHMAAAKRVLKYLRGTTDYAIRYRRKADGLCLHGFVDADYGNDRVTRRSVTGYVFFLASGPISWSSKMQSLVAVSTVESEYIALGEAAKEAIYLRLLLDSLRVPQVGPTELREDNQGAIDLAANEGVFSARTKHIDIRHHHVRDLITNGVVSIAKVSTADQVADILTKGLERVTFTR 876
            +++LGM + +D   + +TLSQ++Y  ++L R G   A P  T        V  K              E LP    + R+Y+  VGSL++    TRPDIA+ V +LS+   +P   H   A R  KYLR T DY + Y  K     L G+VD+D+ ND   RRS++GYVF LA   ISWSSK Q  VA S+ E+EY+A   A KEA++LR+LL  LR P   PT L  DNQGAI LA N   + A TKHID+RHH +RD + +G ++   + TADQVAD+LTKGL R    R
Sbjct: 1125 RWILGMEVTRDRALKIVTLSQKRYIADVLERHGFADARPIST-----PVSVNQKL-------------EKLPAAEIDARKYQSAVGSLMYAMLGTRPDIAYAVGLLSQHSSAPGAEHWNVAARTFKYLRRTADYQLVYNGKRKNDELTGYVDSDWANDPNDRRSISGYVFTLAGAAISWSSKKQQSVAQSSTEAEYMAAAHATKEAVWLRMLLSDLRQPIERPTPLLIDNQGAIALAKNPA-YHACTKHIDVRHHFLRDKVEDGTIAAEYIPTADQVADVLTKGLSREKHDR 1397          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176330.4610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
V5GT76_ANOGL9.800e-6641.81Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C3AUA9_9AGAM4.590e-6541.20Uncharacterized protein (Fragment) n=1 Tax=Serendi... [more]
A0A6H5IY10_9HYME1.750e-6342.47Uncharacterized protein (Fragment) n=1 Tax=Trichog... [more]
A0A146HFR8_MYCCL2.030e-6341.47Polyprotein (Fragment) n=1 Tax=Mycena chlorophos T... [more]
A0A146LSQ0_LYGHE4.600e-6341.03Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7N0A8_LASNI1.610e-6241.84Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=677... [more]
A0A6G0HFF8_LARCR2.870e-6240.88Copia protein Gag-int-pol protein Copia VLP protei... [more]
A0A177U140_9BASI3.620e-6243.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A392N1Z6_9FABA1.370e-6140.07Copia-type polyprotein (Fragment) n=1 Tax=Trifoliu... [more]
A0A4Y9ZJA2_9AGAM1.420e-6143.49Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig176330contigH-elongata_contig176330:405..1310 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score199.5
Seed ortholog evalue2.2e-48
Seed eggNOG ortholog400682.PAC_15698969
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3A8FB@33154,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size906
Cds size891
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930020.879468-CDS-H-elongata_contig176330:404..12951622930020.879468-CDS-H-elongata_contig176330:404..1295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176330 405..1295 -
1691679249.1484134-CDS-H-elongata_contig176330:404..12951691679249.1484134-CDS-H-elongata_contig176330:404..1295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176330 405..1295 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930020.8951664-UTR-H-elongata_contig176330:1295..13101622930020.8951664-UTR-H-elongata_contig176330:1295..1310Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig176330 1296..1310 -
1691679249.1701698-UTR-H-elongata_contig176330:1295..13101691679249.1701698-UTR-H-elongata_contig176330:1295..1310Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig176330 1296..1310 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig176330.4610.1prot_H-elongata_contig176330.4610.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig176330 405..1295 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig176330.4610.1

>prot_H-elongata_contig176330.4610.1 ID=prot_H-elongata_contig176330.4610.1|Name=mRNA_H-elongata_contig176330.4610.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=297bp
MHIDQDPVSRTLTLSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKS
GAGKAAGATGAGKEALPLEGEEQREYRELVGSLLFLARCTRPDIAFPVMM
LSRAMQSPTRGHMAAAKRVLKYLRGTTDYAIRYRRKADGLCLHGFVDADY
GNDRVTRRSVTGYVFFLASGPISWSSKMQSLVAVSTVESEYIALGEAAKE
AIYLRLLLDSLRVPQVGPTELREDNQGAIDLAANEGVFSARTKHIDIRHH
HVRDLITNGVVSIAKVSTADQVADILTKGLERVTFTRLREQILGWT*
back to top

mRNA from alignment at H-elongata_contig176330:405..1310-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig176330.4610.1 ID=mRNA_H-elongata_contig176330.4610.1|Name=mRNA_H-elongata_contig176330.4610.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=906bp|location=Sequence derived from alignment at H-elongata_contig176330:405..1310- (Himanthalia elongata Himel1 dioecious)
AAGTACTTGCTCGGCATGCACATTGACCAAGACCCGGTGTCCCGCACACT GACGCTCTCGCAGCGGAAGTATGCGGGGGAGATCCTGGCACGGTTTGGCA TGGACCGTGCCAACCCTGCCCTGACGTGTGGCGATTTCAAGAATTTCGTC GTGCGTTCCAAGTCCGGCGCTGGGAAGGCGGCCGGGGCTACGGGAGCAGG GAAGGAGGCGCTGCCGCTGGAGGGTGAGGAGCAGCGCGAGTACAGGGAGC TGGTTGGGAGCCTTCTCTTCCTAGCTCGGTGCACCCGGCCGGACATTGCT TTTCCCGTGATGATGCTGTCACGGGCGATGCAGTCTCCGACACGGGGGCA CATGGCAGCGGCCAAGCGGGTACTCAAGTACCTTCGCGGCACGACTGACT ACGCCATCCGCTACCGGAGGAAGGCGGACGGACTCTGCCTCCACGGCTTC GTGGATGCGGACTACGGAAATGACCGCGTGACCCGACGCTCTGTGACGGG CTACGTGTTCTTTCTGGCAAGCGGGCCCATCAGCTGGTCGTCCAAGATGC AGTCGCTGGTCGCCGTTTCGACGGTGGAGTCGGAGTACATTGCTCTTGGG GAGGCAGCCAAGGAGGCAATCTACCTGCGACTGCTTCTGGACTCACTGAG GGTGCCGCAGGTGGGGCCTACAGAGCTCCGCGAGGACAACCAGGGGGCGA TCGACCTGGCGGCGAACGAAGGCGTCTTCTCTGCCAGGACAAAGCATATC GACATTCGCCATCACCATGTGCGTGATCTCATCACGAATGGTGTGGTGTC GATCGCCAAAGTGTCGACGGCCGACCAGGTCGCCGACATACTCACCAAGG GCCTGGAGAGGGTGACCTTCACGCGGCTGCGGGAGCAAATCTTGGGCTGG ACGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig176330:405..1310-

>mRNA_H-elongata_contig176330.4610.1 ID=mRNA_H-elongata_contig176330.4610.1|Name=mRNA_H-elongata_contig176330.4610.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1782bp|location=Sequence derived from alignment at H-elongata_contig176330:405..1310- (Himanthalia elongata Himel1 dioecious)
ATGCACATTGACCAAGACCCGGTGTCCCGCACACTGACGCTCTCGCAGCG
GAAGTATGCGGGGGAGATCCTGGCACGGTTTGGCATGGACCGTGCCAACC
CTGCCCTGACGTGTGGCGATTTCAAGAATTTCGTCGTGCGTTCCAAGTCC
GGCGCTGGGAAGGCGGCCGGGGCTACGGGAGCAGGGAAGGAGGCGCTGCC
GCTGGAGGGTGAGGAGCAGCGCGAGTACAGGGAGCTGGTTGGGAGCCTTC
TCTTCCTAGCTCGGTGCACCCGGCCGGACATTGCTTTTCCCGTGATGATG
CTGTCACGGGCGATGCAGTCTCCGACACGGGGGCACATGGCAGCGGCCAA
GCGGGTACTCAAGTACCTTCGCGGCACGACTGACTACGCCATCCGCTACC
GGAGGAAGGCGGACGGACTCTGCCTCCACGGCTTCGTGGATGCGGACTAC
GGAAATGACCGCGTGACCCGACGCTCTGTGACGGGCTACGTGTTCTTTCT
GGCAAGCGGGCCCATCAGCTGGTCGTCCAAGATGCAGTCGCTGGTCGCCG
TTTCGACGGTGGAGTCGGAGTACATTGCTCTTGGGGAGGCAGCCAAGGAG
GCAATCTACCTGCGACTGCTTCTGGACTCACTGAGGGTGCCGCAGGTGGG
GCCTACAGAGCTCCGCGAGGACAACCAGGGGGCGATCGACCTGGCGGCGA
ACGAAGGCGTCTTCTCTGCCAGGACAAAGCATATCGACATTCGCCATCAC
CATGTGCGTGATCTCATCACGAATGGTGTGGTGTCGATCGCCAAAGTGTC
GACGGCCGACCAGGTCGCCGACATACTCACCAAGGGCCTGGAGAGGGTGA
CCTTCACGCGGCTGCGGGAGCAAATCTTGGGCTGGACGTGAATGCACATT
GACCAAGACCCGGTGTCCCGCACACTGACGCTCTCGCAGCGGAAGTATGC
GGGGGAGATCCTGGCACGGTTTGGCATGGACCGTGCCAACCCTGCCCTGA
CGTGTGGCGATTTCAAGAATTTCGTCGTGCGTTCCAAGTCCGGCGCTGGG
AAGGCGGCCGGGGCTACGGGAGCAGGGAAGGAGGCGCTGCCGCTGGAGGG
TGAGGAGCAGCGCGAGTACAGGGAGCTGGTTGGGAGCCTTCTCTTCCTAG
CTCGGTGCACCCGGCCGGACATTGCTTTTCCCGTGATGATGCTGTCACGG
GCGATGCAGTCTCCGACACGGGGGCACATGGCAGCGGCCAAGCGGGTACT
CAAGTACCTTCGCGGCACGACTGACTACGCCATCCGCTACCGGAGGAAGG
CGGACGGACTCTGCCTCCACGGCTTCGTGGATGCGGACTACGGAAATGAC
CGCGTGACCCGACGCTCTGTGACGGGCTACGTGTTCTTTCTGGCAAGCGG
GCCCATCAGCTGGTCGTCCAAGATGCAGTCGCTGGTCGCCGTTTCGACGG
TGGAGTCGGAGTACATTGCTCTTGGGGAGGCAGCCAAGGAGGCAATCTAC
CTGCGACTGCTTCTGGACTCACTGAGGGTGCCGCAGGTGGGGCCTACAGA
GCTCCGCGAGGACAACCAGGGGGCGATCGACCTGGCGGCGAACGAAGGCG
TCTTCTCTGCCAGGACAAAGCATATCGACATTCGCCATCACCATGTGCGT
GATCTCATCACGAATGGTGTGGTGTCGATCGCCAAAGTGTCGACGGCCGA
CCAGGTCGCCGACATACTCACCAAGGGCCTGGAGAGGGTGACCTTCACGC
GGCTGCGGGAGCAAATCTTGGGCTGGACGTGA
back to top