mRNA_H-elongata_contig176330.4610.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig176330.4610.1 vs. uniprot
Match: V5GT76_ANOGL (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=V5GT76_ANOGL) HSP 1 Score: 219 bits (557), Expect = 9.800e-66 Identity = 125/299 (41.81%), Postives = 179/299 (59.87%), Query Frame = 1
Query: 1 KYLLGMHIDQDPVSRTLTLSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKSGAGKAAGATGAGKEALPLEGEEQRE-----YRELVGSLLFLARCTRPDIAFPVMMLSRAMQSPTRGHMAAAKRVLKYLRGTTDYAIRYRRKA--DGLCLHGFVDADYGNDRVTRRSVTGYVFFLASGPISWSSKMQSLVAVSTVESEYIALGEAAKEAIYLRLLLDSLRVPQVGPTELREDNQGAIDLAANEGVFSARTKHIDIRHHHVRDLITNGVVSIAKVSTADQVADILTKGLERVTFTR 876
K +LG I +D V++ + + Q+ Y ++L +F MD++NP T ++ KE LP+ E +R+ Y+E VGSLLF ++ +RPDI + + +SR Q+P H +A KR+ +YL+GT Y + + RK D + G+ DAD+G+D RRSVTGY+F PISW++K Q VA+ST ESEY+A+ A +EAI+LR L L PT L DNQGA LA N G + ARTKHIDIRHH +++ I NG++SI VST+ +AD LTK L++V F +
Sbjct: 57 KKILGFQITRDRVNKKIWIDQKDYLEKVLRKFNMDQSNPVDTPMSAGEKLI----------------KEQLPIGDERKRKMENIPYQEAVGSLLFASQISRPDICYAISCVSRFNQNPGPAHWSAVKRIFRYLKGTIHYRLEFSRKTEIDNSDIIGYCDADWGSDPNDRRSVTGYIFLKNGSPISWNTKKQPTVALSTTESEYMAMSSAVQEAIWLRGLSYELSA-NTKPTLLYVDNQGAQKLALN-GTYQARTKHIDIRHHFLKEKIDNGIISIKYVSTSYMLADSLTKPLDKVKFLK 337
BLAST of mRNA_H-elongata_contig176330.4610.1 vs. uniprot
Match: A0A0C3AUA9_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AUA9_9AGAM) HSP 1 Score: 215 bits (548), Expect = 4.590e-65 Identity = 124/301 (41.20%), Postives = 180/301 (59.80%), Query Frame = 1
Query: 4 YLLGMHIDQDPVSRTLTLSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKSGAGKAAGATGAGKEALPLEGEEQRE-----YRELVGSLLFLARCTRPDIAFPVMMLSRAMQSPTRGHMAAAKRVLKYLRGTTDYAIRYRRKADGLCLHGFVDADYGNDRVTRRSVTGYVFFLASGPISWSSKMQSLVAVSTVESEYIALGEAAKEAIYLRLLLDSLRVPQVGPTELREDNQGAIDLAANEGVFSARTKHIDIRHHHVRDLITNGVVSIAKVSTADQVADILTKGLERVTFTRLREQI 891
+LLGM I +D ++T++LSQ Y ++ RFG+D A PA T F V ++ + P +E RE YRELVGSL++L TRPDI++ V +LS+ + +P R H AAKRVL++L+G+ D+ + +D L + DAD+ D R+S GYVF + G +SWSSK Q VA+S++E+EY+AL +AAKEAI+++ L + V GP + DNQG++ LA N VF ARTKHIDI+HH +RD + +G + + +ST D +AD LTK L R R ++
Sbjct: 20 WLLGMRITRDRSAKTISLSQSAYIDSLVTRFGLDNATPAAT--PFVQGVALTR--------------DQCPANDDEVREMANVPYRELVGSLMYLRVATRPDISYHVSVLSKFLNNPGRAHWEAAKRVLRFLKGSRDWKLTLGGFSD---LVAYSDADWAGDHDDRKSTGGYVFLVGRGAVSWSSKRQPTVALSSLEAEYMALTQAAKEAIWIKSYLADIDVHVHGPVTVFGDNQGSLALAKNP-VFHARTKHIDIQHHFIRDCVASGTIFVDYISTHDMLADGLTKPLSRDKHLRFAYEL 300
BLAST of mRNA_H-elongata_contig176330.4610.1 vs. uniprot
Match: A0A6H5IY10_9HYME (Uncharacterized protein (Fragment) n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IY10_9HYME) HSP 1 Score: 213 bits (543), Expect = 1.750e-63 Identity = 124/292 (42.47%), Postives = 165/292 (56.51%), Query Frame = 1
Query: 10 LGMHIDQDPVSRTLTLSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKSGAGKAAGATGAGKEALPLEGEEQREY--RELVGSLLFLARCTRPDIAFPVMMLSRAMQSPTRGHMAAAKRVLKYLRGTTDYAIRYRRKADGLCLHGFVDADYGNDRVTRRSVTGYVFFLASGPISWSSKMQSLVAVSTVESEYIALGEAAKEAIYLRLLLDSLRVPQVGPTELREDNQGAIDLAANEGVFSARTKHIDIRHHHVRDLITNGVVSIAKVSTADQVADILTKGLERVTFTRL 879
LG+ I++D + L Q +YA +IL RF M ANP T F+ + P E Y RE +GSL+FL TRPD++F V LSR ++ R H A KRV++Y++GT ++ I Y+R G L GF D+D+ D TRRS TGY+F LASGPI+WS++ QS VA+S+ E+EY+A A KE I+LR L+ L PT L DN AI L N VF +TKHI+++HH VR+ +GVV I V + Q+ADILTK L RV L
Sbjct: 30 LGIQIERDRERGQMHLCQSQYAIKILKRFNMFDANPVST--PFEKGTCLTS-----------------PTESPSSTNYPYREAIGSLMFLTNVTRPDLSFSVNYLSRFLEKHARNHCEALKRVMRYIKGTINHGIVYKRSNGGDKLLGFSDSDFAGDADTRRSTTGYIFMLASGPITWSTQRQSSVALSSTEAEYVAAAAATKEIIWLRKLMQDLGFHDAKPTTLHVDNMSAIQLIRNP-VFHKKTKHIEVKHHFVREKFQSGVVEIQHVPSESQLADILTKALPRVQHQNL 301
BLAST of mRNA_H-elongata_contig176330.4610.1 vs. uniprot
Match: A0A146HFR8_MYCCL (Polyprotein (Fragment) n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146HFR8_MYCCL) HSP 1 Score: 214 bits (544), Expect = 2.030e-63 Identity = 124/299 (41.47%), Postives = 168/299 (56.19%), Query Frame = 1
Query: 1 KYLLGMHIDQDPVSRTLTLSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKSGAGKAAGATGAGKEALPLEGEEQREYRELVGSLLFLARCTRPDIAFPVMMLSRAMQSPTRGHMAAAKRVLKYLRGTTDYAIRYRRKADGLCLHGFVDADYGNDRVTRRSVTGYVFFLASGPISWSSKMQSLVAVSTVESEYIALGEAAKEAIYLRLLLDSLRVPQVGPTELREDNQGAIDLAANEGVFSARTKHIDIRHHHVRDLITNGVVSIAKVSTADQVADILTKGLERVTFTRLREQILG 897
K +LGM I Q+P ++ LSQ YA +L GM++AN T D N + + G T + Y +G L++LA TRPD+AF V LS+ P HM+A KRV +YLRGTT I +R D LH F DAD+GND RRS++GY+ FL + P+SW+S+ Q VA+ST+E+EY+A E I+LR L L + PT + DNQ AI A N +F AR+KHID+RHH VR+ + + V + ++ D +ADILTK L R F LR+Q LG
Sbjct: 95 KQILGMEISQNPTDGSIRLSQANYASRVLESVGMEKANAVQTPLD-PNVKLTPLAKGDPRIGDTAF-----------RHGYLSGIGKLMYLAVATRPDLAFAVQHLSQFSIRPGPEHMSALKRVFRYLRGTTSLGIAFRGSGD---LHIFSDADWGNDNTDRRSISGYLSFLGASPLSWASRKQPTVALSTMEAEYMAAARTTCEIIWLRQLASELGISVEAPTPIHIDNQSAIKFAENP-MFHARSKHIDMRHHFVRERVASNEVKLVHCASEDNLADILTKPLPRPQFVALRDQFLG 377
BLAST of mRNA_H-elongata_contig176330.4610.1 vs. uniprot
Match: A0A146LSQ0_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Lygus hesperus TaxID=30085 RepID=A0A146LSQ0_LYGHE) HSP 1 Score: 212 bits (539), Expect = 4.600e-63 Identity = 119/290 (41.03%), Postives = 173/290 (59.66%), Query Frame = 1
Query: 4 YLLGMHIDQDPVSRTLTLSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKSGAGKAAGATGAGKEALPLEGEEQRE--YRELVGSLLFLARCTRPDIAFPVMMLSRAMQSPTRGHMAAAKRVLKYLRGTTDYAIRYRRKADGLCLHGFVDADYGNDRVTRRSVTGYVFFLASGPISWSSKMQSLVAVSTVESEYIALGEAAKEAIYLRLLLDSL-RVPQVGPTELREDNQGAIDLAANEGVFSARTKHIDIRHHHVRDLITNGVVSIAKVSTADQVADILTKGLERV 864
Y LGMHI++DP++ T+ + Q++Y +L RF M P T + ++++ EG E + Y+ VGSL++ A CTRPD++F V LSR +P H + KRVL+YL+GT D + +++ D LHG+ D+DY +D + R SVTGYVF L+SG ISWSSK Q VA ST E+EY+++ A +EA++LR++L L + +++ DN+GA+DL N +RTKHID+ HH +R+ + NG VSI K ST VAD+LTK L V
Sbjct: 52 YCLGMHIERDPITGTICVDQKRYIESVLKRFHMSDCKPQGTPMEHGLKLMKN--------------------EGSECADVPYQTAVGSLMYAANCTRPDLSFAVGALSRFNANPNMTHWSYVKRVLRYLQGTCDGKLVFKKTEDP--LHGYADSDYADDPIDRISVTGYVFLLSSGAISWSSKKQPTVARSTTEAEYMSISNATQEALWLRMVLTELGELKPDMKIDIKCDNKGAVDLTKNS-THHSRTKHIDVHHHFIREAVKNGQVSITKESTEFMVADLLTKALPGV 318
BLAST of mRNA_H-elongata_contig176330.4610.1 vs. uniprot
Match: A0A0J7N0A8_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7N0A8_LASNI) HSP 1 Score: 208 bits (529), Expect = 1.610e-62 Identity = 118/282 (41.84%), Postives = 171/282 (60.64%), Query Frame = 1
Query: 49 LTLSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKSGAGKAAGATGAGKEALPLEGEEQRE-----YRELVGSLLFLARCTRPDIAFPVMMLSRAMQSPTRGHMAAAKRVLKYLRGTTDYAIRYRR-KADGL-CLHGFVDADYGNDRVTRRSVTGYVFFLASGPISWSSKMQSLVAVSTVESEYIALGEAAKEAIYLRLLLDSLRVPQVG-PTELREDNQGAIDLAANEGVFSARTKHIDIRHHHVRDLITNGVVSIAKVSTADQVADILTKGLERVTF 870
+ L Q+ Y +I+ ++GM+ P T D N + R + +P EE++E YRE VG LL++++ TRPD+A+ V +SR MQ+ R H A KR+L+YLRGT DY +++ + +A G + G+ DAD+ N+ TRRSVTG +F GPI+W SK+QS VA+ST E+EY+AL +EA++LR L+ L+ V PTEL DN+GAIDL N G + +RTKHIDIRHH +R++ N + + + T + +AD LTKGL F
Sbjct: 2 ICLDQKSYIQKIIKKYGMEDCKPTSTPYDPSNKLSR----------------DMMPKNEEEEKEMKNVPYREAVGGLLYISQGTRPDVAYAVSTVSRYMQNLGRNHWTAVKRILRYLRGTLDYRLQFGKDQAKGHENITGYCDADWANESDTRRSVTGNIFLFQGGPITWQSKLQSTVALSTTEAEYMALSAGCQEAMWLRALVRDLQPLLVSSPTELYNDNKGAIDLVKNGG-YRSRTKHIDIRHHFIREMNENSEIVVNYLPTTEMIADALTKGLYASKF 266
BLAST of mRNA_H-elongata_contig176330.4610.1 vs. uniprot
Match: A0A6G0HFF8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HFF8_LARCR) HSP 1 Score: 214 bits (545), Expect = 2.870e-62 Identity = 121/296 (40.88%), Postives = 172/296 (58.11%), Query Frame = 1
Query: 4 YLLGMHIDQDPVSRTLTLSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKSGAGKAAGATGAGKEALPLEGEEQREYRELVGSLLFLARCTRPDIAFPVMMLSRAMQSPTRGHMAAAKRVLKYLRGTTDYAIRYRRKADGLCLHGFVDADYGNDRVTRRSVTGYVFFLASGPISWSSKMQSLVAVSTVESEYIALGEAAKEAIYLRLLLDSLRVPQVGPTELREDNQGAIDLAANEGVFSARTKHIDIRHHHVRDLITNGVVSIAKVSTADQVADILTKGLERVTFTRLREQI 891
Y+LG+ + QD + ++ L Q+ Y +L ++GMD+ANP T D N ++ G Y+ +VGSLL+ A TRPDIA V +S+ P HM A KR+L+YL+GT + A++Y+R ++ L GF DAD+ D+ RRS TG +F L G +SW SK Q+ VA+ST E+EY+AL +AA+E +L LL L + PT + EDNQGAI +A N V +RTKHIDIR+H++R+ + NG + + T D ADILTK L + F LR +I
Sbjct: 228 YILGISVIQDKTNNSVYLHQKHYIEAVLQKYGMDKANPVTTPAD-ANVKLQKDDGVSNPV---------------NPGTYQSIVGSLLYAAMATRPDIAQAVSAVSKFNAKPNTAHMTAVKRILRYLKGTINLALKYQR-SESETLLGFSDADWAGDQDDRRSTTGNIFLLGGGAVSWLSKKQNTVALSTAEAEYVALSQAAQECTWLTRLLSDLGMDAT-PTVILEDNQGAIAIAKNP-VDHSRTKHIDIRYHYIRECVQNGQIQLQYCPTEDMKADILTKPLAKQKFEYLRREI 504
BLAST of mRNA_H-elongata_contig176330.4610.1 vs. uniprot
Match: A0A177U140_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177U140_9BASI) HSP 1 Score: 212 bits (540), Expect = 3.620e-62 Identity = 127/291 (43.64%), Postives = 168/291 (57.73%), Query Frame = 1
Query: 7 LLGMHIDQDPVSRTLTLSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKSGAGKAAGATGAGKEALPLEGEEQREYRELVGSLLFLARCTRPDIAFPVMMLSRAMQSPTRGHMAAAKRVLKYLRGTTDYAIRYRRKADGLCLHGFVDADYGNDRVTRRSVTGYVFFLASGPISWSSKMQSLVAVSTVESEYIALGEAAKEAIYLRLLLDSLRVPQVGPTELREDNQGAIDLAANEGVFSARTKHIDIRHHHVRDLITNGVVSIAKVSTADQVADILTKGLERVTFTRL 879
+LG+ I + R T+SQ Y +IL R+GM PA K + + G G+ KE + E+ LVG LL+LA+ TRPDIAF V L+R M +P+ H AAKRVL+YL GT D +R+R D L G+ D+D+G D TRRSV+GYVFFL P++W SK+Q V+VS+ E+EY+AL EA +EAI+ LL L++ GP +L DN GA LA N RTKHI I HH VRD +G + + +V T D AD++TK VTF RL
Sbjct: 136 MLGIRIHRSTCGRVATMSQSGYVSQILQRYGMADCKPA------KTPMADAMKNLGPRVGSMATVKE--------RHEFAALVGCLLWLAQGTRPDIAFQVGKLARFMANPSPEHTDAAKRVLRYLAGTRDLCLRFRH-TDVAQLVGYADSDHGADPTTRRSVSGYVFFLYGNPVTWRSKLQDTVSVSSTEAEYVALSEATREAIWAIQLLQELKLHANGPVDLHTDNTGAEALARNPQSHQ-RTKHIRIHHHLVRDCNADGTIKVKRVHTDDNPADLMTK---TVTFARL 407
BLAST of mRNA_H-elongata_contig176330.4610.1 vs. uniprot
Match: A0A392N1Z6_9FABA (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392N1Z6_9FABA) HSP 1 Score: 208 bits (529), Expect = 1.370e-61 Identity = 119/297 (40.07%), Postives = 171/297 (57.58%), Query Frame = 1
Query: 1 KYLLGMHIDQDPVSRTLTLSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKSGAGKAAGATGAGKEALPLEGEEQREYRELVGSLLFLARCTRPDIAFPVMMLSRAMQSPTRGHMAAAKRVLKYLRGTTDYAIRYRRKADGLCLHGFVDADYGNDRVTRRSVTGYVFFLASGPISWSSKMQSLVAVSTVESEYIALGEAAKEAIYLRLLLDSLRVPQVGPTELREDNQGAIDLAANEGVFSARTKHIDIRHHHVRDLITNGVVSIAKVSTADQVADILTKGLERVTFTRLREQI 891
+Y LG+ I Q V + + Q+KYA +IL RFGM+ N C +K GK AT EYR+++G L++L RPD+ F V +++R M+ PT H+AAAKR+L+YL GT + + Y++ + L G+ D+DY D R+S +GYVF SGPISWSSK Q++V +ST E+E++A A +A++LR +LD L Q T + DN +I L+ N V R KHID+R H +RDL G V + ST +Q+ADI+TK L+ TF +LRE +
Sbjct: 22 RYFLGVEIKQ--VDNGILIYQQKYAQDILVRFGMENCN--TVCSPMIPGNKLTKDEGGKLVDAT---------------EYRQMIGCLMYLL-AIRPDLTFSVCLIARYMERPTELHLAAAKRILRYLXGTIGFGVWYKKVNERAELQGWTDSDYACDLDDRKSTSGYVFAFGSGPISWSSKKQAIVTLSTTEAEFVAAASCACQAVWLRRILDQLGKAQSNGTVIWCDNSSSIKLSRNP-VMHGRCKHIDVRFHFLRDLTKEGDVELKHCSTQEQLADIMTKALKLETFCKLREDL 297
BLAST of mRNA_H-elongata_contig176330.4610.1 vs. uniprot
Match: A0A4Y9ZJA2_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZJA2_9AGAM) HSP 1 Score: 221 bits (563), Expect = 1.420e-61 Identity = 127/292 (43.49%), Postives = 168/292 (57.53%), Query Frame = 1
Query: 1 KYLLGMHIDQDPVSRTLTLSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKSGAGKAAGATGAGKEALPLEGEEQREYRELVGSLLFLARCTRPDIAFPVMMLSRAMQSPTRGHMAAAKRVLKYLRGTTDYAIRYRRKADGLCLHGFVDADYGNDRVTRRSVTGYVFFLASGPISWSSKMQSLVAVSTVESEYIALGEAAKEAIYLRLLLDSLRVPQVGPTELREDNQGAIDLAANEGVFSARTKHIDIRHHHVRDLITNGVVSIAKVSTADQVADILTKGLERVTFTR 876
+++LGM + +D + +TLSQ++Y ++L R G A P T V K E LP + R+Y+ VGSL++ TRPDIA+ V +LS+ +P H A R KYLR T DY + Y K L G+VD+D+ ND RRS++GYVF LA ISWSSK Q VA S+ E+EY+A A KEA++LR+LL LR P PT L DNQGAI LA N + A TKHID+RHH +RD + +G ++ + TADQVAD+LTKGL R R
Sbjct: 1125 RWILGMEVTRDRALKIVTLSQKRYIADVLERHGFADARPIST-----PVSVNQKL-------------EKLPAAEIDARKYQSAVGSLMYAMLGTRPDIAYAVGLLSQHSSAPGAEHWNVAARTFKYLRRTADYQLVYNGKRKNDELTGYVDSDWANDPNDRRSISGYVFTLAGAAISWSSKKQQSVAQSSTEAEYMAAAHATKEAVWLRMLLSDLRQPIERPTPLLIDNQGAIALAKNPA-YHACTKHIDVRHHFLRDKVEDGTIAAEYIPTADQVADVLTKGLSREKHDR 1397 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176330.4610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig176330.4610.1 >prot_H-elongata_contig176330.4610.1 ID=prot_H-elongata_contig176330.4610.1|Name=mRNA_H-elongata_contig176330.4610.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=297bp MHIDQDPVSRTLTLSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKSback to top mRNA from alignment at H-elongata_contig176330:405..1310- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig176330.4610.1 ID=mRNA_H-elongata_contig176330.4610.1|Name=mRNA_H-elongata_contig176330.4610.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=906bp|location=Sequence derived from alignment at H-elongata_contig176330:405..1310- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig176330:405..1310- >mRNA_H-elongata_contig176330.4610.1 ID=mRNA_H-elongata_contig176330.4610.1|Name=mRNA_H-elongata_contig176330.4610.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1782bp|location=Sequence derived from alignment at H-elongata_contig176330:405..1310- (Himanthalia elongata Himel1 dioecious)back to top |