mRNA_H-elongata_contig176298.4608.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig176298.4608.1
Unique NamemRNA_H-elongata_contig176298.4608.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig176298.4608.1 vs. uniprot
Match: D7FM33_ECTSI (W2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM33_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 2.850e-36
Identity = 136/313 (43.45%), Postives = 159/313 (50.80%), Query Frame = 1 
Query:    1 GGKDVGGYTAPSPGERKP-LQLQSRTAPPRLPPISAKEPEKTAPAPAPKP------SGPRSNPFGAAQAVDTTQRDKEIEAKLEAERQSSVRRRDETVRSSGKPDIAAGDSNREETGVGYEGDEAKP------EANSKNAE------------------VEGSERGGEKPAPQRPVGRWAALRREGGGDDRLNHSVGGFSRRDRED-----------DRRGGGFGRD-DRSSFGRRNDGDTGPSGGGFSSSRMEREPVQPP-----APPAGNAFAKRFGSNFDRDLDRTYPRPS-GGMGXXXXXXDRRDDDRR 792
            GG+D G    P+  E +P LQLQSR APP LPP+ +KE +  A             +GPR+NPFGAAQAVDTTQ+DKEIEAK+EA RQ+S RRRDE VRSS   +    D        G  G++A P      +  +K A                     G E G  K  P +PVGRWAALRREG                               D RG    RD +R SFGRRN+GD+  +GGG                   APPAGNAFAKRFGSNFDRD +R YPRP+ GGMG      DRRDDDRR
Sbjct:    8 GGRDGGYDNPPASSEGRPRLQLQSRKAPPPLPPMGSKEDKAAAEXXXXXXXXXXXXAGPRANPFGAAQAVDTTQKDKEIEAKVEAARQTSFRRRDEAVRSSKPAEGGGEDGGATAXXXGAAGEDASPATAAMEDGTTKTAADXXXXXXXXXXXXXXXXXTAGEEDGKPKAEPAKPVGRWAALRREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDGRGXXXXRDGERPSFGRRNEGDS--AGGGXXXXXXXXXXXXXXXXXXXAPPAGNAFAKRFGSNFDRDSER-YPRPNAGGMGGGGGF-DRRDDDRR 316
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176298.4608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM33_ECTSI2.850e-3643.45W2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig176298contigH-elongata_contig176298:19..855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.1
Seed ortholog evalue9.4e-35
Seed eggNOG ortholog2880.D7FM33
Preferred nameEIF4G3
EggNOG free text desc.translation initiation factor activity
EggNOG OGsKOG0401@1,KOG0401@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionW2 domain
Ec32 orthologEc-01_010490.1
Exons2
Model size801
Cds size801
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930020.703642-CDS-H-elongata_contig176298:18..4891622930020.703642-CDS-H-elongata_contig176298:18..489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176298 19..489 -
1691679249.08981-CDS-H-elongata_contig176298:18..4891691679249.08981-CDS-H-elongata_contig176298:18..489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176298 19..489 -
1622930020.7587059-CDS-H-elongata_contig176298:525..8551622930020.7587059-CDS-H-elongata_contig176298:525..855Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176298 526..855 -
1691679249.0999153-CDS-H-elongata_contig176298:525..8551691679249.0999153-CDS-H-elongata_contig176298:525..855Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176298 526..855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig176298.4608.1prot_H-elongata_contig176298.4608.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig176298 19..855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig176298.4608.1

>prot_H-elongata_contig176298.4608.1 ID=prot_H-elongata_contig176298.4608.1|Name=mRNA_H-elongata_contig176298.4608.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=267bp
GGKDVGGYTAPSPGERKPLQLQSRTAPPRLPPISAKEPEKTAPAPAPKPS
GPRSNPFGAAQAVDTTQRDKEIEAKLEAERQSSVRRRDETVRSSGKPDIA
AGDSNREETGVGYEGDEAKPEANSKNAEVEGSERGGEKPAPQRPVGRWAA
LRREGGGDDRLNHSVGGFSRRDREDDRRGGGFGRDDRSSFGRRNDGDTGP
SGGGFSSSRMEREPVQPPAPPAGNAFAKRFGSNFDRDLDRTYPRPSGGMG
GGGGGFDRRDDDRRSGM
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mRNA from alignment at H-elongata_contig176298:19..855-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig176298.4608.1 ID=mRNA_H-elongata_contig176298.4608.1|Name=mRNA_H-elongata_contig176298.4608.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=837bp|location=Sequence derived from alignment at H-elongata_contig176298:19..855- (Himanthalia elongata Himel1 dioecious)
GGCGGCAAGGACGTCGGTGGCTACACCGCTCCGTCGCCGGGGGAGCGCAA
GCCTCTTCAATTACAAAGCCGCACGGCGCCTCCGCGGCTGCCCCCAATAT
CCGCAAAGGAACCCGAAAAAACAGCTCCTGCACCTGCACCCAAGCCATCA
GGTCCCAGGTCGAACCCTTTTGGCGCTGCGCAGGCAGTCGATACCACGCA
GCGTGATAAAGAAATCGAGGCCAAATTAGAGGCCGAGAGGCAATCCTCGG
TGCGGCGCAGAGACGAAACGGTTCGTTCTAGTGGTAAGCCCGACATCGCC
GCTGGAGACTCCAATCGCGAAGAAACTGGCGTCAAGATATATGGCCAGGT
CGAAAGAAAAGCGGAGGTAGGTTACGAGGGAGACGAAGCAAAACCCGAAG
CGAACAGTAAGAATGCGGAAGTTGAAGGTTCCGAGCGTGGCGGCGAGAAG
CCGGCACCACAAAGGCCGGTCGGGCGATGGGCGGCACTCCGGCGGGAAGG
AGGCGGCGATGACAGGCTTAACCATTCCGTCGGCGGCTTTTCCCGTAGGG
ATCGTGAAGATGATCGCAGGGGTGGAGGATTTGGTCGGGATGATCGGTCT
AGCTTCGGAAGGAGGAATGATGGTGACACCGGCCCCAGTGGCGGAGGTTT
CAGCAGCAGCCGCATGGAGCGGGAGCCTGTGCAACCTCCAGCTCCCCCGG
CTGGTAATGCCTTTGCGAAACGCTTCGGCTCCAACTTCGACCGTGACTTG
GACCGCACGTACCCTCGCCCGTCTGGCGGTATGGGTGGGGGAGGGGGTGG
GTTTGACCGCCGCGATGACGATAGGCGTTCCGGAATG
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Coding sequence (CDS) from alignment at H-elongata_contig176298:19..855-

>mRNA_H-elongata_contig176298.4608.1 ID=mRNA_H-elongata_contig176298.4608.1|Name=mRNA_H-elongata_contig176298.4608.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1602bp|location=Sequence derived from alignment at H-elongata_contig176298:19..855- (Himanthalia elongata Himel1 dioecious)
GGCGGCAAGGACGTCGGTGGCTACACCGCTCCGTCGCCGGGGGAGCGCAA
GCCTCTTCAATTACAAAGCCGCACGGCGCCTCCGCGGCTGCCCCCAATAT
CCGCAAAGGAACCCGAAAAAACAGCTCCTGCACCTGCACCCAAGCCATCA
GGTCCCAGGTCGAACCCTTTTGGCGCTGCGCAGGCAGTCGATACCACGCA
GCGTGATAAAGAAATCGAGGCCAAATTAGAGGCCGAGAGGCAATCCTCGG
TGCGGCGCAGAGACGAAACGGTTCGTTCTAGTGGTAAGCCCGACATCGCC
GCTGGAGACTCCAATCGCGAAGAAACTGGCGGCGGCAAGGACGTCGGTGG
CTACACCGCTCCGTCGCCGGGGGAGCGCAAGCCTCTTCAATTACAAAGCC
GCACGGCGCCTCCGCGGCTGCCCCCAATATCCGCAAAGGAACCCGAAAAA
ACAGCTCCTGCACCTGCACCCAAGCCATCAGGTCCCAGGTCGAACCCTTT
TGGCGCTGCGCAGGCAGTCGATACCACGCAGCGTGATAAAGAAATCGAGG
CCAAATTAGAGGCCGAGAGGCAATCCTCGGTGCGGCGCAGAGACGAAACG
GTTCGTTCTAGTGGTAAGCCCGACATCGCCGCTGGAGACTCCAATCGCGA
AGAAACTGGCGTAGGTTACGAGGGAGACGAAGCAAAACCCGAAGCGAACA
GTAAGAATGCGGAAGTTGAAGGTTCCGAGCGTGGCGGCGAGAAGCCGGCA
CCACAAAGGCCGGTCGGGCGATGGGCGGCACTCCGGCGGGAAGGAGGCGG
CGATGACAGGCTTAACCATTCCGTCGGCGGCTTTTCCCGTAGGGATCGTG
AAGATGATCGCAGGGGTGGAGGATTTGGTCGGGATGATCGGTCTAGCTTC
GGAAGGAGGAATGATGGTGACACCGGCCCCAGTGGCGGAGGTTTCAGCAG
CAGCCGCATGGAGCGGGAGCCTGTGCAACCTCCAGCTCCCCCGGCTGGTA
ATGCCTTTGCGAAACGCTTCGGCTCCAACTTCGACCGTGACTTGGACCGC
ACGTACCCTCGCCCGTCTGGCGGTATGGGTGGGGGAGGGGGTGGGTTTGA
CCGCCGCGATGACGATAGGCGTTCCGGAATGGTAGGTTACGAGGGAGACG
AAGCAAAACCCGAAGCGAACAGTAAGAATGCGGAAGTTGAAGGTTCCGAG
CGTGGCGGCGAGAAGCCGGCACCACAAAGGCCGGTCGGGCGATGGGCGGC
ACTCCGGCGGGAAGGAGGCGGCGATGACAGGCTTAACCATTCCGTCGGCG
GCTTTTCCCGTAGGGATCGTGAAGATGATCGCAGGGGTGGAGGATTTGGT
CGGGATGATCGGTCTAGCTTCGGAAGGAGGAATGATGGTGACACCGGCCC
CAGTGGCGGAGGTTTCAGCAGCAGCCGCATGGAGCGGGAGCCTGTGCAAC
CTCCAGCTCCCCCGGCTGGTAATGCCTTTGCGAAACGCTTCGGCTCCAAC
TTCGACCGTGACTTGGACCGCACGTACCCTCGCCCGTCTGGCGGTATGGG
TGGGGGAGGGGGTGGGTTTGACCGCCGCGATGACGATAGGCGTTCCGGAA
TG
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