mRNA_H-elongata_contig176167.4604.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig176167.4604.1
Unique NamemRNA_H-elongata_contig176167.4604.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig176167.4604.1 vs. uniprot
Match: D7G6L2_ECTSI (CTP synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L2_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 3.470e-16
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:   31 PGSRHPYYVGTQYHPEFLSRPLEPSPSFLGLILSASDQMYAWVSNDGN 174
            P S+HPYYVGTQYHPEFLSRPLEPSP FLGL+L++S QM AW+   G+
Sbjct:  461 PRSKHPYYVGTQYHPEFLSRPLEPSPPFLGLLLASSGQMDAWLEGSGS 508
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BLAST of mRNA_H-elongata_contig176167.4604.1 vs. uniprot
Match: A0A7S2RDI6_9STRA (CTP synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RDI6_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.770e-14
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:   31 PGSRHPYYVGTQYHPEFLSRPLEPSPSFLGLILSASDQMYAWVSNDGNSSQQ 186
            P S HP+Y+G QYHPEF SRPLEPSP FLGL+LSAS Q+ AW+++ G+  ++
Sbjct:  488 PRSVHPFYMGVQYHPEFKSRPLEPSPPFLGLLLSASGQLDAWIASQGSKKRK 539
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BLAST of mRNA_H-elongata_contig176167.4604.1 vs. uniprot
Match: A0A835Z0Y6_9STRA (CTP synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Y6_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.810e-13
Identity = 32/50 (64.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   31 PGSRHPYYVGTQYHPEFLSRPLEPSPSFLGLILSASDQMYAWVSNDGNSS 180
            P S HPYYVGTQYHPEFLSRPLEPSP FLGL+L+A +++ A++++  +S+
Sbjct:  516 PSSVHPYYVGTQYHPEFLSRPLEPSPPFLGLVLAACNELDAYLASKVSSN 565
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BLAST of mRNA_H-elongata_contig176167.4604.1 vs. uniprot
Match: A0A7S2ALR8_9STRA (CTP synthase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ALR8_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.050e-11
Identity = 29/44 (65.91%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   31 PGSRHPYYVGTQYHPEFLSRPLEPSPSFLGLILSASDQMYAWVS 162
            P + HP+Y GTQYHPEF SRPL PSP FLG++L+AS Q+ AW+S
Sbjct:  568 PRTVHPFYFGTQYHPEFKSRPLNPSPPFLGVVLAASGQLDAWLS 611
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BLAST of mRNA_H-elongata_contig176167.4604.1 vs. uniprot
Match: A0A8J9V1R2_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9V1R2_BRAAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.670e-11
Identity = 28/40 (70.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   43 HPYYVGTQYHPEFLSRPLEPSPSFLGLILSASDQMYAWVS 162
            HPYYVG QYHPE+LSRPL PSP FLGLIL+A D++ +++S
Sbjct:  522 HPYYVGVQYHPEYLSRPLNPSPPFLGLILAAKDKLKSYLS 561
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BLAST of mRNA_H-elongata_contig176167.4604.1 vs. uniprot
Match: W7TKH0_9STRA (CTP synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKH0_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.640e-11
Identity = 28/44 (63.64%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:   40 RHPYYVGTQYHPEFLSRPLEPSPSFLGLILSASDQMYAWVSNDG 171
            +HP+++GTQYHPEF SRPLEPSP FLGLIL+AS Q+  ++  +G
Sbjct:  488 KHPFFLGTQYHPEFQSRPLEPSPPFLGLILAASGQLREYLRTNG 531
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BLAST of mRNA_H-elongata_contig176167.4604.1 vs. uniprot
Match: A0A6P7GBH3_DIAVI (CTP synthase n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7GBH3_DIAVI)

HSP 1 Score: 66.2 bits (160), Expect = 3.650e-11
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   40 RHPYYVGTQYHPEFLSRPLEPSPSFLGLILSASDQMYAWVS 162
            +HPYYV  QYHPE+LSRP+ PSP FLGLIL+A D++ A++S
Sbjct:  518 KHPYYVAVQYHPEYLSRPMRPSPPFLGLILAAKDRLKAYIS 558
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BLAST of mRNA_H-elongata_contig176167.4604.1 vs. uniprot
Match: UPI00096B29E7 (CTP synthase n=1 Tax=Aethina tumida TaxID=116153 RepID=UPI00096B29E7)

HSP 1 Score: 65.9 bits (159), Expect = 4.990e-11
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   40 RHPYYVGTQYHPEFLSRPLEPSPSFLGLILSASDQMYAWV 159
            +HPYYVG QYHPE+LSRPL PSP FLGLIL+A D++  ++
Sbjct:  523 KHPYYVGVQYHPEYLSRPLNPSPPFLGLILAAKDKLKGYL 562
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BLAST of mRNA_H-elongata_contig176167.4604.1 vs. uniprot
Match: UPI000870655A (CTP synthase 1 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI000870655A)

HSP 1 Score: 65.9 bits (159), Expect = 5.000e-11
Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   43 HPYYVGTQYHPEFLSRPLEPSPSFLGLILSASDQMYAWVSNDGNSSQQC 189
            HPYYV  QYHPE++SRPL PSP +LGLIL+AS Q+ + + ++  + QQC
Sbjct:  584 HPYYVAVQYHPEYVSRPLRPSPPYLGLILAASGQLESHLDSELGTLQQC 632
[Close]
BLAST of mRNA_H-elongata_contig176167.4604.1 vs. uniprot
Match: A0A0Q9XM07_DROMO (CTP synthase n=7 Tax=repleta group TaxID=32321 RepID=A0A0Q9XM07_DROMO)

HSP 1 Score: 65.9 bits (159), Expect = 5.000e-11
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:   43 HPYYVGTQYHPEFLSRPLEPSPSFLGLILSASDQMYAWV 159
            HPYYV TQYHPE+LSRPL+PSP FLGLIL+A D++  ++
Sbjct:  517 HPYYVATQYHPEYLSRPLKPSPPFLGLILAAEDRLQIYI 555
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176167.4604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6L2_ECTSI3.470e-1672.92CTP synthase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A7S2RDI6_9STRA2.770e-1461.54CTP synthase n=1 Tax=Rhizochromulina marina TaxID=... [more]
A0A835Z0Y6_9STRA1.810e-1364.00CTP synthase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S2ALR8_9STRA1.050e-1165.91CTP synthase n=1 Tax=Dictyocha speculum TaxID=3568... [more]
A0A8J9V1R2_BRAAE2.670e-1170.00Hypothetical protein n=1 Tax=Brassicogethes aeneus... [more]
W7TKH0_9STRA3.640e-1163.64CTP synthase n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A6P7GBH3_DIAVI3.650e-1165.85CTP synthase n=1 Tax=Diabrotica virgifera virgifer... [more]
UPI00096B29E74.990e-1167.50CTP synthase n=1 Tax=Aethina tumida TaxID=116153 R... [more]
UPI000870655A5.000e-1157.14CTP synthase 1 n=1 Tax=Galendromus occidentalis Ta... [more]
A0A0Q9XM07_DROMO5.000e-1169.23CTP synthase n=7 Tax=repleta group TaxID=32321 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig176167contigH-elongata_contig176167:977..1168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue7.1e-13
Seed eggNOG ortholog2880.D7G6L2
Preferred nameCTPS2
KEGG rclassRC00010,RC00074
KEGG koko:K01937
KEGG ReactionR00571,R00573
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00052
GOsGO:0000322,GO:0000323,GO:0000324,GO:0001775,GO:0002164,GO:0002376,GO:0002520,GO:0003674,GO:0003824,GO:0003883,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006629,GO:0006644,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008283,GO:0008610,GO:0008654,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009791,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0030097,GO:0032501,GO:0032502,GO:0032943,GO:0034404,GO:0034641,GO:0034654,GO:0035166,GO:0035167,GO:0042098,GO:0042100,GO:0042110,GO:0042113,GO:0042221,GO:0042455,GO:0042493,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0046036,GO:0046112,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0048513,GO:0048534,GO:0048542,GO:0048569,GO:0048731,GO:0048732,GO:0048856,GO:0050896,GO:0055086,GO:0070661,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097268,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
EggNOG free text desc.'de novo' CTP biosynthetic process
EggNOG OGsCOG0504@1,KOG2387@2759
EC6.3.4.2
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930020.4705045-CDS-H-elongata_contig176167:976..11681622930020.4705045-CDS-H-elongata_contig176167:976..1168Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176167 977..1168 -
1691679249.0168245-CDS-H-elongata_contig176167:976..11681691679249.0168245-CDS-H-elongata_contig176167:976..1168Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176167 977..1168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig176167.4604.1prot_H-elongata_contig176167.4604.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig176167 977..1168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig176167.4604.1

>prot_H-elongata_contig176167.4604.1 ID=prot_H-elongata_contig176167.4604.1|Name=mRNA_H-elongata_contig176167.4604.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
DTHNEHDRHHPGSRHPYYVGTQYHPEFLSRPLEPSPSFLGLILSASDQMY
AWVSNDGNSSQQC*
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mRNA from alignment at H-elongata_contig176167:977..1168-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig176167.4604.1 ID=mRNA_H-elongata_contig176167.4604.1|Name=mRNA_H-elongata_contig176167.4604.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig176167:977..1168- (Himanthalia elongata Himel1 dioecious)
GACACTCATAATGAACACGATCGACATCATCCAGGGTCTCGACACCCCTA
CTACGTAGGCACGCAGTACCATCCGGAGTTCTTGAGCCGCCCCCTCGAGC
CATCTCCCTCTTTCCTGGGACTAATCCTCTCTGCAAGCGACCAAATGTAC
GCTTGGGTAAGCAATGATGGAAACTCGTCTCAACAGTGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig176167:977..1168-

>mRNA_H-elongata_contig176167.4604.1 ID=mRNA_H-elongata_contig176167.4604.1|Name=mRNA_H-elongata_contig176167.4604.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig176167:977..1168- (Himanthalia elongata Himel1 dioecious)
GACACTCATAATGAACACGATCGACATCATCCAGGGTCTCGACACCCCTA
CTACGTAGGCACGCAGTACCATCCGGAGTTCTTGAGCCGCCCCCTCGAGC
CATCTCCCTCTTTCCTGGGACTAATCCTCTCTGCAAGCGACCAAATGTAC
GCTTGGGTAAGCAATGATGGAAACTCGTCTCAACAGTGCTGAGACACTCA
TAATGAACACGATCGACATCATCCAGGGTCTCGACACCCCTACTACGTAG
GCACGCAGTACCATCCGGAGTTCTTGAGCCGCCCCCTCGAGCCATCTCCC
TCTTTCCTGGGACTAATCCTCTCTGCAAGCGACCAAATGTACGCTTGGGT
AAGCAATGATGGAAACTCGTCTCAACAGTGCTGA
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