mRNA_H-elongata_contig176112.4602.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig176112.4602.1
Unique NamemRNA_H-elongata_contig176112.4602.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig176112.4602.1 vs. uniprot
Match: D8LF37_ECTSI (S1 motif domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF37_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 4.690e-16
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:    1 MADIVCPGKRLGRVRDFRAGPGTYVRGAYIYASVLGPKEEEQTVSGGEDKPFIMVRDDTTAVPSRQCL 204
            M ++VCPGKRLGR  ++RAGPGTYVRG YIYASV+GPK E Q  +  + KP+++V     A  + Q +
Sbjct:    1 MTEVVCPGKRLGRASEYRAGPGTYVRGTYIYASVVGPKLE-QAAADEDGKPYLIVSQPKRARAADQVI 67
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BLAST of mRNA_H-elongata_contig176112.4602.1 vs. uniprot
Match: A0A015M391_RHIIW (ECR1_N domain-containing protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015M391_RHIIW)

HSP 1 Score: 58.5 bits (140), Expect = 2.830e-9
Identity = 30/75 (40.00%), Postives = 43/75 (57.33%), Query Frame = 1 
Query:    7 DIVCPGKRLGRVRDFRAGPGTYVRGAYIYASVLGPKEEEQTVSGGEDKPFIMVRDDTTAVPSRQCLLRTNQCGRL 231
            +IV PG+RLG  +D+ AGPGTYVRG  +YASV+G K   +  + GE     + R+   +     C L T +  R+
Sbjct:    5 NIVTPGQRLGFAQDYVAGPGTYVRGNLLYASVVGMKRVSKQTAEGETLVLTVSREKQQSAIPEVCSLITGKVIRI 79
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BLAST of mRNA_H-elongata_contig176112.4602.1 vs. uniprot
Match: A0A1R0H1K2_9FUNG (ECR1_N domain-containing protein n=1 Tax=Smittium mucronatum TaxID=133383 RepID=A0A1R0H1K2_9FUNG)

HSP 1 Score: 52.4 bits (124), Expect = 3.650e-7
Identity = 28/59 (47.46%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:    4 ADIVCPGKRLGRVRDFRAGPGTYVRGAYIYASVLGPKEEEQTVSGGE-------DKPFI 159
            +  V  G+RLGRV+D+ AG GTYVR   I +SVLG K  E+T   G+       D PFI
Sbjct:    4 SSTVVVGQRLGRVQDYVAGDGTYVRNGMIISSVLGKKAVEETTETGQKVLDSWCDTPFI 62
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BLAST of mRNA_H-elongata_contig176112.4602.1 vs. uniprot
Match: A0A397T025_9GLOM (S1 motif domain-containing protein n=7 Tax=Glomeraceae TaxID=36751 RepID=A0A397T025_9GLOM)

HSP 1 Score: 53.9 bits (128), Expect = 8.580e-7
Identity = 25/61 (40.98%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:    7 DIVCPGKRLGRVRDFRAGPGTYVRGAYIYASVLGPKEEEQTVSGGEDKPFIMVRDDTTAVP 189
            +IV PG+RLG  +D+ +GPGTYVRG  +YASV+G K   +  +G      +      +A+P
Sbjct:    5 NIVTPGQRLGFAQDYVSGPGTYVRGNLLYASVVGMKRVTKQTTGESPMLTVSREKQQSAIP 65
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BLAST of mRNA_H-elongata_contig176112.4602.1 vs. uniprot
Match: A0A8H8A006_9FUNG (ECR1_N domain-containing protein n=1 Tax=Olpidium bornovanus TaxID=278681 RepID=A0A8H8A006_9FUNG)

HSP 1 Score: 51.6 bits (122), Expect = 2.200e-6
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 MADIVCPGKRLGRVRDFRAGPGTYVRGAYIYASVLG 108
            MAD+V PG+RLG + D+  GPGTYVRG  I ASV+G
Sbjct:    1 MADVVVPGQRLGYLDDYSPGPGTYVRGDLILASVVG 36
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BLAST of mRNA_H-elongata_contig176112.4602.1 vs. uniprot
Match: A0A4P9ZXX5_9FUNG (S1 motif domain-containing protein n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZXX5_9FUNG)

HSP 1 Score: 52.8 bits (125), Expect = 2.570e-6
Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:   10 IVCPGKRLGRVRDFRAGPGTYVRGAYIYASVLGPKEEEQT--VSGGEDKP--------FIMVRDDTTAVP 189
            IV PG RLG+  D +AGPGTY+R  +IYAS LG  ++  T   +  ED+         F+  R + ++VP
Sbjct:    5 IVTPGLRLGKTSDLQAGPGTYIRDGFIYASTLGTLKQFATPAAAAAEDETDPDPRPTLFVAPRKELSSVP 74
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BLAST of mRNA_H-elongata_contig176112.4602.1 vs. uniprot
Match: A0A383WIF6_TETOB (S1 motif domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WIF6_TETOB)

HSP 1 Score: 50.4 bits (119), Expect = 1.690e-5
Identity = 25/55 (45.45%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:    1 MADIVCPGKRLGRVRDFRAGPGTYVRGAYIYASVLGPKEEEQTVSGGEDKPFIMV 165
            MA +VC G RL      +AG GTYVRG +IYAS++G    +Q V  G D+  + V
Sbjct:    1 MAALVCVGDRLASADSLQAGTGTYVRGGFIYASIVGL---QQVVHEGTDEAVVQV 52
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BLAST of mRNA_H-elongata_contig176112.4602.1 vs. uniprot
Match: W7U6U4_9STRA (3-5 exoribonuclease csl4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6U4_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 2.230e-5
Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:   10 IVCPGKRLGRVRDFRAGPGTYVRGAYIYASVLGPKEEEQTVSGGEDKPFIMV 165
            I  PG R+GR+   ++GPGTY++G +IYAS+LG  +  Q    G D P + V
Sbjct:   14 IAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQILQPEKEG-DLPMLRV 64
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176112.4602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LF37_ECTSI4.690e-1652.94S1 motif domain-containing protein n=2 Tax=Ectocar... [more]
A0A015M391_RHIIW2.830e-940.00ECR1_N domain-containing protein n=1 Tax=Rhizophag... [more]
A0A1R0H1K2_9FUNG3.650e-747.46ECR1_N domain-containing protein n=1 Tax=Smittium ... [more]
A0A397T025_9GLOM8.580e-740.98S1 motif domain-containing protein n=7 Tax=Glomera... [more]
A0A8H8A006_9FUNG2.200e-663.89ECR1_N domain-containing protein n=1 Tax=Olpidium ... [more]
A0A4P9ZXX5_9FUNG2.570e-640.00S1 motif domain-containing protein n=1 Tax=Dimarga... [more]
A0A383WIF6_TETOB1.690e-545.45S1 motif domain-containing protein n=1 Tax=Tetrade... [more]
W7U6U4_9STRA2.230e-544.233-5 exoribonuclease csl4 n=1 Tax=Nannochloropsis g... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig176112contigH-elongata_contig176112:487..747 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue3.6e-12
Seed eggNOG ortholog2880.D8LF37
Preferred nameEXOSC1
KEGG koko:K03320,ko:K07573,ko:K12669
KEGG TC1.A.11,9.A.45.1.2,9.A.45.1.4,9.A.45.1.6
KEGG Pathwayko00510,ko00513,ko01100,ko03018,ko04141,map00510,map00513,map01100,map03018,map04141
KEGG ModuleM00072,M00390,M00391
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000228,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000785,GO:0000790,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009892,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016072,GO:0016074,GO:0016075,GO:0016078,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0016973,GO:0019219,GO:0019222,GO:0019439,GO:0022613,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031329,GO:0031503,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0034427,GO:0034470,GO:0034613,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0042254,GO:0042886,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051641,GO:0051649,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0070727,GO:0071025,GO:0071027,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071051,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354
EggNOG free text desc.Putative DNA-binding domain
EggNOG OGsCOG1096@1,KOG3409@2759
COG Functional cat.JK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000,ko03019
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCsl4 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-06_001520.1
Exons1
Model size261
Cds size261
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930020.371933-CDS-H-elongata_contig176112:486..7471622930020.371933-CDS-H-elongata_contig176112:486..747Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176112 487..747 -
1691679248.9810452-CDS-H-elongata_contig176112:486..7471691679248.9810452-CDS-H-elongata_contig176112:486..747Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176112 487..747 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig176112.4602.1prot_H-elongata_contig176112.4602.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig176112 487..747 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig176112.4602.1

>prot_H-elongata_contig176112.4602.1 ID=prot_H-elongata_contig176112.4602.1|Name=mRNA_H-elongata_contig176112.4602.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MADIVCPGKRLGRVRDFRAGPGTYVRGAYIYASVLGPKEEEQTVSGGEDK
PFIMVRDDTTAVPSRQCLLRTNQCGRLHLFIDQRHR*
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mRNA from alignment at H-elongata_contig176112:487..747-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig176112.4602.1 ID=mRNA_H-elongata_contig176112.4602.1|Name=mRNA_H-elongata_contig176112.4602.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig176112:487..747- (Himanthalia elongata Himel1 dioecious)
ATGGCAGATATTGTATGCCCAGGTAAGCGCCTAGGAAGGGTGAGAGATTT
TCGGGCGGGACCTGGCACCTATGTAAGAGGAGCATATATTTACGCGAGCG
TGTTGGGACCCAAGGAGGAGGAGCAGACTGTCTCCGGAGGCGAGGACAAA
CCGTTTATAATGGTGAGAGACGATACTACTGCCGTACCTAGTCGACAATG
TTTGCTTCGAACAAATCAATGCGGCCGTCTTCACCTGTTTATTGACCAGC
GGCATCGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig176112:487..747-

>mRNA_H-elongata_contig176112.4602.1 ID=mRNA_H-elongata_contig176112.4602.1|Name=mRNA_H-elongata_contig176112.4602.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig176112:487..747- (Himanthalia elongata Himel1 dioecious)
ATGGCAGATATTGTATGCCCAGGTAAGCGCCTAGGAAGGGTGAGAGATTT
TCGGGCGGGACCTGGCACCTATGTAAGAGGAGCATATATTTACGCGAGCG
TGTTGGGACCCAAGGAGGAGGAGCAGACTGTCTCCGGAGGCGAGGACAAA
CCGTTTATAATGGTGAGAGACGATACTACTGCCGTACCTAGTCGACAATG
TTTGCTTCGAACAAATCAATGCGGCCGTCTTCACCTGTTTATTGACCAGC
GGCATCGATGAATGGCAGATATTGTATGCCCAGGTAAGCGCCTAGGAAGG
GTGAGAGATTTTCGGGCGGGACCTGGCACCTATGTAAGAGGAGCATATAT
TTACGCGAGCGTGTTGGGACCCAAGGAGGAGGAGCAGACTGTCTCCGGAG
GCGAGGACAAACCGTTTATAATGGTGAGAGACGATACTACTGCCGTACCT
AGTCGACAATGTTTGCTTCGAACAAATCAATGCGGCCGTCTTCACCTGTT
TATTGACCAGCGGCATCGATGA
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