mRNA_H-elongata_contig176104.4601.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig176104.4601.1
Unique NamemRNA_H-elongata_contig176104.4601.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig176104.4601.1 vs. uniprot
Match: A0A6H5KX71_9PHAE (Dolichyl-phosphate beta-glucosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX71_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.140e-20
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:   40 LQEVAVNWREVPGSKLIRSKLDVITTSANMLRDMLCVKLCYILGLWRIAPGLNG 201
            + EVAVNWREVPGSKLIRSKLDVITTSA MLRDM+CV+LCY+LG+W +A   +G
Sbjct:  301 MAEVAVNWREVPGSKLIRSKLDVITTSATMLRDMMCVRLCYVLGVWAVAEQPSG 354
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BLAST of mRNA_H-elongata_contig176104.4601.1 vs. uniprot
Match: A0A835ZBS6_9STRA (Dolichyl-phosphate beta-glucosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBS6_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.120e-17
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:   25 RFNLFLQEVAVNWREVPGSKLIRSKLDVITTSANMLRDMLCVKLCYILGLWRIAP 189
            RF + + EVAV W EVPGSKLI SKLD+ITTS  MLRDMLCV++CY  G+W+I P
Sbjct:  278 RFGIPMVEVAVTWHEVPGSKLITSKLDIITTSLTMLRDMLCVRVCYTAGIWKICP 332
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BLAST of mRNA_H-elongata_contig176104.4601.1 vs. uniprot
Match: A0A7S2RH03_9STRA (Dolichyl-phosphate beta-glucosyltransferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RH03_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 8.660e-17
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   46 EVAVNWREVPGSKLIRSKLDVITTSANMLRDMLCVKLCYILGLWRIA 186
            EVAVNW EV GSKLI+SKLDV+TTS  MLRDMLCV+LCY+ G+W+IA
Sbjct:  247 EVAVNWHEVDGSKLIQSKLDVVTTSLTMLRDMLCVRLCYMFGIWKIA 293
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BLAST of mRNA_H-elongata_contig176104.4601.1 vs. uniprot
Match: A0A7S3M8W2_9STRA (Dolichyl-phosphate beta-glucosyltransferase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8W2_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.970e-14
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:   40 LQEVAVNWREVPGSKLIRSKLDVITTSANMLRDMLCVKLCYILGLWR---IAPGLNGG 204
            +QEV+VNW EV GSKLIR+KLDV+TTS  M RD+LC++L Y+LG+W    +AP    G
Sbjct:  197 IQEVSVNWHEVDGSKLIRNKLDVVTTSITMARDILCMRLSYLLGMWEFPSVAPHTTYG 254
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BLAST of mRNA_H-elongata_contig176104.4601.1 vs. uniprot
Match: W7TP05_9STRA (Dolichyl-phosphate beta-glucosyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TP05_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.170e-14
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   25 RFNLFLQEVAVNWREVPGSKLIRSKLDVITTSANMLRDMLCVKLCYILGLWRIAPGLNGG 204
            R  + + EV V W+EV GSKLI +KLDV+  S  + RDMLCV++CY+LGLWR AP    G
Sbjct:  315 RLGVPMAEVPVRWQEVEGSKLITNKLDVVLASIGIFRDMLCVRICYLLGLWRTAPYSRAG 374
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BLAST of mRNA_H-elongata_contig176104.4601.1 vs. uniprot
Match: A0A482UNI6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UNI6_9ARCH)

HSP 1 Score: 68.2 bits (165), Expect = 9.050e-14
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:   55 VNWREVPGSKLIRSKLDVITTSANMLRDMLCVKLCYILGLWRIAPGLN 198
            +NWREV GSKLIR+KLDV+TTS  M RDML V+L Y+LG+W++ P L+
Sbjct:    1 MNWREVEGSKLIRNKLDVLTTSLTMARDMLSVRLSYLLGIWKL-PSLS 47
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BLAST of mRNA_H-elongata_contig176104.4601.1 vs. uniprot
Match: A0A7S3Y170_HETAK (Dolichyl-phosphate beta-glucosyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y170_HETAK)

HSP 1 Score: 72.8 bits (177), Expect = 1.770e-13
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:   40 LQEVAVNWREVPGSKLIRSKLDVITTSANMLRDMLCVKLCYILGLWRI 183
            L+EVAVNW EVPGSKLI+SK DV+TTS  M RDML V+  Y++G+WR+
Sbjct:  291 LREVAVNWEEVPGSKLIQSKWDVVTTSLTMARDMLVVRASYLVGIWRV 338
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BLAST of mRNA_H-elongata_contig176104.4601.1 vs. uniprot
Match: A0A7S0C430_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C430_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.110e-12
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   25 RFNLFLQEVAVNWREVPGSKLIRSKLDVITTSANMLRDMLCVKLCYILGLWRI 183
            + N+ L EV+VNW+EV GSKL  S+  +   S  MLRDMLCV+LCY+L +W+I
Sbjct:   62 QLNIPLAEVSVNWKEVDGSKLDTSRFALALNSIGMLRDMLCVRLCYLLRIWKI 114
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BLAST of mRNA_H-elongata_contig176104.4601.1 vs. uniprot
Match: A0A7S1D253_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D253_CYCTE)

HSP 1 Score: 66.2 bits (160), Expect = 1.190e-11
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:   40 LQEVAVNWREVPGSKLIRSKLDVITTSANMLRDMLCVKLCYILGLWRI 183
            ++EVAV W EV GSKL  SKL +   S  MLRDM+CV+LCY LG+WR+
Sbjct:  155 IREVAVQWHEVDGSKLDSSKLQLALVSLGMLRDMVCVRLCYSLGIWRV 202
[Close]
BLAST of mRNA_H-elongata_contig176104.4601.1 vs. uniprot
Match: B7FZD8_PHATC (Dolichyl-phosphate beta-glucosyltransferase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FZD8_PHATC)

HSP 1 Score: 66.2 bits (160), Expect = 3.870e-11
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:   25 RFNLFLQEVAVNWREVPGSKLIRSKLDVITTSANMLRDMLCVKLCYILGLWRI 183
            R  L +QEVAV W EV GSKL  S   +I  +  MLRDMLCV+LCY  GLW++
Sbjct:  286 RLQLPMQEVAVPWHEVEGSKLHTSAFSLIVVAVQMLRDMLCVRLCYTFGLWKV 338
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176104.4601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KX71_9PHAE2.140e-2075.93Dolichyl-phosphate beta-glucosyltransferase n=2 Ta... [more]
A0A835ZBS6_9STRA1.120e-1767.27Dolichyl-phosphate beta-glucosyltransferase n=1 Ta... [more]
A0A7S2RH03_9STRA8.660e-1776.60Dolichyl-phosphate beta-glucosyltransferase n=1 Ta... [more]
A0A7S3M8W2_9STRA2.970e-1458.62Dolichyl-phosphate beta-glucosyltransferase n=1 Ta... [more]
W7TP05_9STRA4.170e-1455.00Dolichyl-phosphate beta-glucosyltransferase n=2 Ta... [more]
A0A482UNI6_9ARCH9.050e-1464.58Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3Y170_HETAK1.770e-1366.67Dolichyl-phosphate beta-glucosyltransferase n=1 Ta... [more]
A0A7S0C430_9STRA4.110e-1254.72Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S1D253_CYCTE1.190e-1160.42Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
B7FZD8_PHATC3.870e-1156.60Dolichyl-phosphate beta-glucosyltransferase n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig176104contigH-elongata_contig176104:201..407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue2.1e-15
Seed eggNOG ortholog2880.D8LR86
Preferred nameALG5
KEGG rclassRC00005,RC02795
KEGG koko:K00729,ko:K03027
KEGG ReactionR00435,R00441,R00442,R00443,R01005
KEGG Pathwayko00230,ko00240,ko00510,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map00510,map01100,map03020,map04623,map05169
KEGG ModuleM00055,M00181,M00182
GOsGO:0001667,GO:0001703,GO:0001704,GO:0001707,GO:0003002,GO:0003674,GO:0003824,GO:0004576,GO:0004581,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006493,GO:0006629,GO:0006807,GO:0006928,GO:0006996,GO:0007009,GO:0007029,GO:0007030,GO:0007043,GO:0007275,GO:0007368,GO:0007369,GO:0007389,GO:0007498,GO:0007509,GO:0008078,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009888,GO:0009953,GO:0009987,GO:0010004,GO:0010256,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016477,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0019991,GO:0022607,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032502,GO:0034329,GO:0034330,GO:0034645,GO:0035251,GO:0036211,GO:0040003,GO:0040011,GO:0042074,GO:0042175,GO:0042335,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043297,GO:0043412,GO:0043413,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045216,GO:0046527,GO:0048332,GO:0048598,GO:0048646,GO:0048729,GO:0048856,GO:0048870,GO:0051179,GO:0051674,GO:0061024,GO:0070085,GO:0071704,GO:0071840,GO:0090130,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.dolichyl-phosphate beta-glucosyltransferase activity
EggNOG OGsCOG0463@1,KOG2977@2759
EC2.4.1.117
COG Functional cat.M
CAZyGT2
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko01003,ko03021
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930020.3306773-CDS-H-elongata_contig176104:200..4071622930020.3306773-CDS-H-elongata_contig176104:200..407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176104 201..407 -
1691679248.9665136-CDS-H-elongata_contig176104:200..4071691679248.9665136-CDS-H-elongata_contig176104:200..407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176104 201..407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig176104.4601.1prot_H-elongata_contig176104.4601.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig176104 201..407 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig176104.4601.1

>prot_H-elongata_contig176104.4601.1 ID=prot_H-elongata_contig176104.4601.1|Name=mRNA_H-elongata_contig176104.4601.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
MAYAGTPGRFNLFLQEVAVNWREVPGSKLIRSKLDVITTSANMLRDMLCV
KLCYILGLWRIAPGLNGGE
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mRNA from alignment at H-elongata_contig176104:201..407-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig176104.4601.1 ID=mRNA_H-elongata_contig176104.4601.1|Name=mRNA_H-elongata_contig176104.4601.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig176104:201..407- (Himanthalia elongata Himel1 dioecious)
ATGGCTTACGCCGGCACCCCTGGTCGATTTAACTTGTTCCTTCAGGAGGT
GGCGGTCAACTGGCGGGAGGTTCCGGGATCGAAGCTTATTCGCTCCAAGC
TTGACGTCATCACGACCTCGGCCAACATGCTGCGCGACATGCTCTGCGTC
AAGCTCTGCTACATCCTGGGGCTGTGGAGGATAGCACCGGGCCTGAACGG
CGGCGAA
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Coding sequence (CDS) from alignment at H-elongata_contig176104:201..407-

>mRNA_H-elongata_contig176104.4601.1 ID=mRNA_H-elongata_contig176104.4601.1|Name=mRNA_H-elongata_contig176104.4601.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig176104:201..407- (Himanthalia elongata Himel1 dioecious)
ATGGCTTACGCCGGCACCCCTGGTCGATTTAACTTGTTCCTTCAGGAGGT
GGCGGTCAACTGGCGGGAGGTTCCGGGATCGAAGCTTATTCGCTCCAAGC
TTGACGTCATCACGACCTCGGCCAACATGCTGCGCGACATGCTCTGCGTC
AAGCTCTGCTACATCCTGGGGCTGTGGAGGATAGCACCGGGCCTGAACGG
CGGCGAAATGGCTTACGCCGGCACCCCTGGTCGATTTAACTTGTTCCTTC
AGGAGGTGGCGGTCAACTGGCGGGAGGTTCCGGGATCGAAGCTTATTCGC
TCCAAGCTTGACGTCATCACGACCTCGGCCAACATGCTGCGCGACATGCT
CTGCGTCAAGCTCTGCTACATCCTGGGGCTGTGGAGGATAGCACCGGGCC
TGAACGGCGGCGAA
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