mRNA_H-elongata_contig17601.4595.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17601.4595.1 vs. uniprot
Match: D7FQ66_ECTSI (Putative oxidoreductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ66_ECTSI) HSP 1 Score: 281 bits (720), Expect = 5.940e-87 Identity = 154/227 (67.84%), Postives = 180/227 (79.30%), Query Frame = 1
Query: 1 RNVTAGHEAAADIIRENPNARVECHHLDLASFSSVRSFPERAVGVEPVSALIHNAGVMAPPYETTVDGHELTFQVNHLSPFLLTDLLLPNLRRAHKDSGGLSLSRVVLVSSGAHRWASAGGRGAAGGLASGAGASA-EAMLGG-------NRGWSVNRWRSYAGSKLCNVLYASELTKRYGGEGSGVVGVSVRPGTVATNITRHSTALRLLFAVAFPFLTPLEKVSK 657
RNVTAGHEAA DI+R++P+A VECH LDLASFSSVRSF + AVG VSA+IHNAGVMA PY TTVDGHELTFQVNHL+ F LT+LLLPNLRRA++D+G LSRVV+V+SGAHRWAS +GAAGGLA GAGA+ E GG +RGW +W++YAGSKLCNVLYA+ELT+RYGGE SGVVGV+VRPGTV T I RHS LR +F + PFLT +EK +
Sbjct: 60 RNVTAGHEAANDILRQHPDACVECHPLDLASFSSVRSFAKSAVGGRAVSAVIHNAGVMAVPYRTTVDGHELTFQVNHLAQFFLTELLLPNLRRAYRDTG--ELSRVVIVASGAHRWASTNNQGAAGGLARGAGAAQHEVGAGGISYATEMSRGW--GKWQAYAGSKLCNVLYAAELTRRYGGEDSGVVGVAVRPGTVRTAIARHSPLLRFIFTLVQPFLTSVEKAGE 282
BLAST of mRNA_H-elongata_contig17601.4595.1 vs. uniprot
Match: A0A835YS02_9STRA (Putative oxidoreductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS02_9STRA) HSP 1 Score: 167 bits (422), Expect = 4.000e-43 Identity = 101/239 (42.26%), Postives = 139/239 (58.16%), Query Frame = 1
Query: 1 RNVTAGHEAAADIIRENPNARVECH-----------------HLDLASFSSVRSFPERAVGVEPVSALIHNAGVMAPPYETTVDGHELTFQVNHLSPFLLTDLLLPNLRRAHKDSGGLSLSRVVLVSSGAHRWASAGGRGAAGGLASGAGASAEAMLGGNRGWSVNRWRSYAGSKLCNVLYASELTKRYGGEGSGVVGVSVRPGTVATNITRHSTALRLLFAVAFPFLTPLEKVSKPRA 666
R+V AG +I+ +P A +EC LDLA F+SVR+F E+A+G PVS+++HNAGVM P + T DGH+LT QVNHL+PFLLT+LLLPN++ A K+ G SRVV+VSSG HRW G+ L ++ + W+ YA +KL N+L+ SEL +R G G+ V+VRPG T ITRHS LR+L+A+ P LTP+++ + A
Sbjct: 65 RDVKAGAAVVEEILEVHPGASLECQITQHVNTNCCAPGRSPQKLDLADFASVRTFAEQAIGDRPVSSIVHNAGVMGAPRQLTKDGHDLTIQVNHLAPFLLTNLLLPNMKAAAKELG--RSSRVVVVSSGTHRW----------------GSFEPDHLYNDK--TCGPWQMYANTKLYNILFVSELHRRQGT--LGITAVAVRPGLCRTAITRHSKLLRVLYALLSPILTPVDQAGQSLA 281
BLAST of mRNA_H-elongata_contig17601.4595.1 vs. uniprot
Match: A0A1Y1HWQ4_KLENI (Short chain dehydrogenase/reductase protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWQ4_KLENI) HSP 1 Score: 129 bits (323), Expect = 1.410e-29 Identity = 86/197 (43.65%), Postives = 113/197 (57.36%), Query Frame = 1
Query: 1 RNVTAGHEAAADIIRENPNARVECHHLDLASFSSVRSFPERAVGVE-PVSALIHNAGVMAPPYETTVDGHELTFQVNHLSPFLLTDLLLPNLRRAHKDSGGLSLSRVVLVSSGAHRWASAGGRGAAGGLASGAGASAEAMLGGNRGWSVNRWRSYAGSKLCNVLYASELTKRYGGEGSGVVGVSVRPGTVATNITRH 588
RN AG ADI++ +P A+V+ LDL+S SVRSF + P++ L++NAGVM P+ T DGHE+ F NHL FLLTDLLL NL++ K +G + SRVVL+SS AH G G + L G+S + +Y SKL NVL+A+EL KR EG+ V SV PG +ATN+ RH
Sbjct: 66 RNTEAGQATKADILKGSPKAQVDVMSLDLSSLDSVRSFASEFEKTKLPLNILVNNAGVMMCPFSKTKDGHEMQFGTNHLGHFLLTDLLLDNLKQTAKKTG--TESRVVLLSSRAHH------------RTYGEGIRFD-KLNSEEGYSP--FSAYGQSKLANVLHANELAKRLKAEGADVTVNSVHPGVIATNLGRH 245
BLAST of mRNA_H-elongata_contig17601.4595.1 vs. uniprot
Match: A0A834F7B5_ORYME (Retinol dehydrogenase 11 n=1 Tax=Oryzias melastigma TaxID=30732 RepID=A0A834F7B5_ORYME) HSP 1 Score: 118 bits (296), Expect = 1.420e-26 Identity = 91/227 (40.09%), Postives = 117/227 (51.54%), Query Frame = 1
Query: 1 RNVTAGHEAAADIIRENPNARVECHHLDLASFSSVRSFPERAVG-VEPVSALIHNAGVMAPPYETTVDGHELTFQVNHLSPFLLTDLLLPNLRRAHKDSGGLSLSRVVLVSSGAHRWASAGGRGAAGGLASGAGASAEAMLGGNRGW----------SVNRWRSYAGSKLCNVLYASELTKRYGGEGSGVVGVSVRPGTVATNITRHSTALRLLFAVAFPFL-TPLE 645
R+ G EAAA I E P A+VE LDLA S+R+F + + V + LI+NAGVM PY TVDG E+ VNHL FLLT LL+ L+R+ + +R+V+VSS AH N GW S N +Y SKL NVL+A EL +R +GS V SV PGTV +++TRHST + +LF+V FL TP E
Sbjct: 4 RDTEKGEEAAASIRAEYPKAQVEVRELDLADTCSIRAFAQNFLREVHQLHILINNAGVMMCPYTKTVDGFEMHIGVNHLGHFLLTYLLVGLLKRS-------APARIVVVSSLAH----------------------------NFGWIRFHDLHSQGSYNSGLAYCQSKLANVLFARELARRL--KGSDVTVNSVHPGTVNSDLTRHSTIMTILFSVFSVFLKTPRE 193
BLAST of mRNA_H-elongata_contig17601.4595.1 vs. uniprot
Match: A0A4Z2HEV2_9TELE (Retinol dehydrogenase 12 n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2HEV2_9TELE) HSP 1 Score: 120 bits (301), Expect = 1.790e-26 Identity = 89/227 (39.21%), Postives = 116/227 (51.10%), Query Frame = 1
Query: 1 RNVTAGHEAAADIIRENPNARVECHHLDLASFSSVRSFPERAVG-VEPVSALIHNAGVMAPPYETTVDGHELTFQVNHLSPFLLTDLLLPNLRRAHKDSGGLSLSRVVLVSSGAHRWASAGGRGAAGGLASGAGASAEAMLGGNRGW----------SVNRWRSYAGSKLCNVLYASELTKRYGGEGSGVVGVSVRPGTVATNITRHSTALRLLFAVAFPFL-TPLE 645
R+V G EAA I +P ARVE LDLA S+R+F ++ +G V + LIHNAGVM PY T+DG E+ VNHL FLLT LL+ ++R+ + +RVV+VSS AH N GW S N +Y SKL NVL+ EL +R +G+ V SV PGTV +++TRHST + + F V FL TP E
Sbjct: 98 RDVDKGEEAADGIRAAHPEARVEVRELDLADTCSIRAFAQKFLGEVNHLHILIHNAGVMMCPYTKTIDGFEMHIGVNHLGHFLLTSLLIGLMKRS-------APARVVVVSSLAH----------------------------NFGWIRFHDLHSQGSYNSGLAYCQSKLANVLFTRELARRL--KGTDVTVNSVHPGTVNSDLTRHSTLMTIFFTVFSTFLKTPRE 287
BLAST of mRNA_H-elongata_contig17601.4595.1 vs. uniprot
Match: A0A3B5QZ01_XIPMA (Uncharacterized protein n=1 Tax=Xiphophorus maculatus TaxID=8083 RepID=A0A3B5QZ01_XIPMA) HSP 1 Score: 119 bits (298), Expect = 3.220e-26 Identity = 92/227 (40.53%), Postives = 117/227 (51.54%), Query Frame = 1
Query: 1 RNVTAGHEAAADIIRENPNARVECHHLDLASFSSVRSFPERAVG-VEPVSALIHNAGVMAPPYETTVDGHELTFQVNHLSPFLLTDLLLPNLRRAHKDSGGLSLSRVVLVSSGAHRWASAGGRGAAGGLASGAGASAEAMLGGNRGW----------SVNRWRSYAGSKLCNVLYASELTKRYGGEGSGVVGVSVRPGTVATNITRHSTALRLLFAVAFPFL-TPLE 645
RNV G EAAA I A+VE LDLA S+R+F ++ + V + LI+NAGVM PY TVDG E+ VNHL FLLT LL+ LRR+ + +RV++VSS AH N GW S N +Y SKL NVL+A EL +R +G+ V SV PGTV +++TRHST + +LF V FL TPLE
Sbjct: 70 RNVEKGEEAAASIRAAYSEAKVEVRELDLADTCSIRAFAQKFLREVNHLHILINNAGVMMCPYTKTVDGFEMHIGVNHLGHFLLTYLLIGLLRRS-------APARVLVVSSLAH----------------------------NFGWIRFHDLHSQGSYNSGLAYCQSKLANVLFARELARRL--KGTNVTVNSVHPGTVNSDLTRHSTLMMILFTVFSVFLKTPLE 259
BLAST of mRNA_H-elongata_contig17601.4595.1 vs. uniprot
Match: A0A166JAP2_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A166JAP2_DAUCS) HSP 1 Score: 119 bits (297), Expect = 4.310e-26 Identity = 76/212 (35.85%), Postives = 117/212 (55.19%), Query Frame = 1
Query: 1 RNVTAGHEAAADIIRENPNARVECHHLDLASFSSVRSFPERAVGVE-PVSALIHNAGVMAPPYETTVDGHELTFQVNHLSPFLLTDLLLPNLRRAHKDSGGLSLSRVVLVSSGAHRWASAGGRGAAGGLASGAGASAEAMLGGNRGWSVNRWRSYAGSKLCNVLYASELTKRYGGEGSGVVGVSVRPGTVATNITRHSTALRLLFAVAFPFL 633
RNV AG + +I++++P ++++ +DL S +S+R F + P++ LI+NAG+MAPP+ + D E F VNHL PFLLT+LLL +++ + G R+V V+S HR+ G + + N S N +Y SKLCN+L+ ELT+R EG+ V S+ PG +ATNI ++S+ L +F A FL
Sbjct: 61 RNVKAGEKVKGEILQKHPGSKIDVMEIDLNSQASIRKFAADFIATGLPLNILINNAGIMAPPFTLSKDNIEQQFAVNHLGPFLLTNLLLDTMKKTANECG--KEGRIVNVASELHRYGYK------------EGIRFDKI---NDKASYNPNSAYGQSKLCNILHCVELTRRLKEEGANVTANSLHPGVIATNIAQNSSLLGCIFGCAQIFL 255
BLAST of mRNA_H-elongata_contig17601.4595.1 vs. uniprot
Match: A0A161Y1F8_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A161Y1F8_DAUCS) HSP 1 Score: 119 bits (297), Expect = 4.310e-26 Identity = 75/214 (35.05%), Postives = 111/214 (51.87%), Query Frame = 1
Query: 1 RNVTAGHEAAADIIRENPNARVECHHLDLASFSSVRSFPERAVGVE-PVSALIHNAGVMAPPYETTVDGHELTFQVNHLSPFLLTDLLLPNLRRAHKDSGGLSLSRVVLVSSGAHRWASAGGRGAAGGLASGAGASAEAMLGGNRGWSVNRWRSYAG------SKLCNVLYASELTKRYGGEGSGVVGVSVRPGTVATNITRHSTALRLLFAVA 621
RNV AG++ DI++ PNA+++ +DL S +S+R F + P++ L++NAG+MAPP+ + D E F VNHL PFLLT+LLL +++ S R++ VSS HR+ G R +N SY G SKLCN+L+ +EL +R GEG + S+ PG +ATN+ H T L + +A
Sbjct: 61 RNVKAGNKVREDILKNIPNAKIDVMEIDLNSMASIRKFASEYISSGLPLNILVNNAGIMAPPFTLSKDNIEQQFAVNHLGPFLLTNLLLDTMKKTAATSQ--KEGRIINVSSELHRYG---------------------YKEGIRFDKINDESSYDGNLAYKQSKLCNLLHTNELARRLKGEGVNITANSLHPGVIATNLISHMTLLSWVSTIA 251
BLAST of mRNA_H-elongata_contig17601.4595.1 vs. uniprot
Match: A0A164TNQ8_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A164TNQ8_DAUCS) HSP 1 Score: 119 bits (297), Expect = 4.310e-26 Identity = 75/204 (36.76%), Postives = 113/204 (55.39%), Query Frame = 1
Query: 1 RNVTAGHEAAADIIRENPNARVECHHLDLASFSSVRSFPERAVGV-EPVSALIHNAGVMAPPYETTVDGHELTFQVNHLSPFLLTDLLLPNLRRAHKDSGGLSLSRVVLVSSGAHRWASAGGRGAAGGLASGAG---ASAEAMLGGNRGWSVNRWRSYAGSKLCNVLYASELTKRYGGEGSGVVGVSVRPGTVATNITRHSTAL 600
RNV AG + DI+++ PNA+++ +DL S S+R F + + P++ L++NAG+MAPP+ + D E F VNHL PFLLT+LLL +++ +DS R++ +SS H + G G + EA GN +Y+ SKLCN+L+ +ELTKR EG + S+ PG +ATN+ HS+ L
Sbjct: 61 RNVNAGKKVKDDILQKIPNAKIDVMEIDLNSQESIRKFAKEYISCGHPLNILVNNAGIMAPPFTLSKDNIEQQFAVNHLGPFLLTNLLLDTMKKTAEDSQ--KEGRIINISSDLHFY----------GYKEGIRFDKLNDEASYNGNT--------AYSQSKLCNILHTNELTKRLKEEGVNITANSLHPGVIATNLLSHSSLL 244
BLAST of mRNA_H-elongata_contig17601.4595.1 vs. uniprot
Match: A0A3Q0SPB2_AMPCI (Retinol dehydrogenase 12 n=1 Tax=Amphilophus citrinellus TaxID=61819 RepID=A0A3Q0SPB2_AMPCI) HSP 1 Score: 118 bits (296), Expect = 5.440e-26 Identity = 90/227 (39.65%), Postives = 116/227 (51.10%), Query Frame = 1
Query: 1 RNVTAGHEAAADIIRENPNARVECHHLDLASFSSVRSFPERAVG-VEPVSALIHNAGVMAPPYETTVDGHELTFQVNHLSPFLLTDLLLPNLRRAHKDSGGLSLSRVVLVSSGAHRWASAGGRGAAGGLASGAGASAEAMLGGNRGW----------SVNRWRSYAGSKLCNVLYASELTKRYGGEGSGVVGVSVRPGTVATNITRHSTALRLLFAVAFPFL-TPLE 645
R+V G EAAA I NP A+VE LDLA S+R+F ++ + V + LI+NAGVM PY TVDG E+ VNHL FLLT LL+ L+R+ + +R+V+VSS AH N GW S N +Y SKL NVL+ EL R +G+ V SV PGTV +++TRHST + +LF V FL TP E
Sbjct: 65 RDVEKGEEAAASIRAANPKAQVEVRELDLADTCSIRAFAQKFLREVNQLHILINNAGVMMCPYTKTVDGFEMHIGVNHLGHFLLTSLLIGLLKRS-------APARIVVVSSLAH----------------------------NFGWIRFHDLHSQGSYNSGLAYCQSKLANVLFTRELACRL--KGTNVTVNSVHPGTVNSDLTRHSTLMTILFTVFSMFLKTPRE 254 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17601.4595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17601.4595.1 >prot_H-elongata_contig17601.4595.1 ID=prot_H-elongata_contig17601.4595.1|Name=mRNA_H-elongata_contig17601.4595.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp MAPPYETTVDGHELTFQVNHLSPFLLTDLLLPNLRRAHKDSGGLSLSRVVback to top mRNA from alignment at H-elongata_contig17601:515..3016+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17601.4595.1 ID=mRNA_H-elongata_contig17601.4595.1|Name=mRNA_H-elongata_contig17601.4595.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2502bp|location=Sequence derived from alignment at H-elongata_contig17601:515..3016+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17601:515..3016+ >mRNA_H-elongata_contig17601.4595.1 ID=mRNA_H-elongata_contig17601.4595.1|Name=mRNA_H-elongata_contig17601.4595.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at H-elongata_contig17601:515..3016+ (Himanthalia elongata Himel1 dioecious)back to top |