mRNA_H-elongata_contig17575.4587.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17575.4587.1
Unique NamemRNA_H-elongata_contig17575.4587.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17575.4587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17575contigH-elongata_contig17575:6080..6733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size654
Cds size654
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930018.8624868-CDS-H-elongata_contig17575:6079..67331622930018.8624868-CDS-H-elongata_contig17575:6079..6733Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17575 6080..6733 +
1691679248.296404-CDS-H-elongata_contig17575:6079..67331691679248.296404-CDS-H-elongata_contig17575:6079..6733Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17575 6080..6733 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17575.4587.1prot_H-elongata_contig17575.4587.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17575 6080..6733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17575.4587.1

>prot_H-elongata_contig17575.4587.1 ID=prot_H-elongata_contig17575.4587.1|Name=mRNA_H-elongata_contig17575.4587.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=218bp
TAKLHKNPAATRGITACCGSTMDGIAKIVNSCLAAMRPVLHALWRDKCLE
IDIFTEECWITSNGAEIVDILEEIDTHTRKHFSATTPHRFEIYDFEALYA
NLPKMFLQSTIQHILMTVLKHQEQHGLPSVFIKRGHNNDYAEPIIVRKVA
WATIHPQPVTCDSKRQSWFGPEKILLWIKYYVLNEGFVQFGPHIYRQTSG
VFIGTAPAPDLVNDFSF*
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mRNA from alignment at H-elongata_contig17575:6080..6733+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17575.4587.1 ID=mRNA_H-elongata_contig17575.4587.1|Name=mRNA_H-elongata_contig17575.4587.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=654bp|location=Sequence derived from alignment at H-elongata_contig17575:6080..6733+ (Himanthalia elongata Himel1 dioecious)
ACAGCTAAGCTACATAAGAACCCAGCCGCGACTAGGGGGATAACAGCTTG
CTGTGGATCGACAATGGATGGTATTGCTAAGATAGTGAATTCATGCCTTG
CGGCAATGAGACCAGTATTACATGCGCTATGGCGGGATAAATGCCTTGAG
ATTGATATCTTTACAGAGGAATGCTGGATTACATCTAATGGTGCGGAAAT
TGTCGACATCCTTGAAGAGATCGATACTCATACTCGTAAGCATTTCAGTG
CGACAACGCCCCATAGGTTTGAAATATATGACTTTGAGGCGCTGTACGCT
AACCTGCCAAAAATGTTTCTACAATCTACCATTCAGCATATACTGATGAC
TGTACTTAAACACCAGGAGCAACATGGCTTGCCCTCAGTGTTCATAAAAA
GGGGACATAATAATGACTATGCAGAACCAATAATAGTTCGAAAGGTAGCA
TGGGCAACTATACATCCGCAGCCTGTAACATGTGACAGTAAGAGACAATC
CTGGTTTGGTCCTGAGAAAATCCTTCTCTGGATTAAATATTATGTTCTCA
ATGAAGGGTTTGTCCAATTTGGTCCCCATATATATAGGCAGACATCTGGT
GTCTTTATAGGAACTGCCCCTGCCCCGGATCTAGTGAATGATTTTTCATT
TTGA
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Coding sequence (CDS) from alignment at H-elongata_contig17575:6080..6733+

>mRNA_H-elongata_contig17575.4587.1 ID=mRNA_H-elongata_contig17575.4587.1|Name=mRNA_H-elongata_contig17575.4587.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1308bp|location=Sequence derived from alignment at H-elongata_contig17575:6080..6733+ (Himanthalia elongata Himel1 dioecious)
ACAGCTAAGCTACATAAGAACCCAGCCGCGACTAGGGGGATAACAGCTTG
CTGTGGATCGACAATGGATGGTATTGCTAAGATAGTGAATTCATGCCTTG
CGGCAATGAGACCAGTATTACATGCGCTATGGCGGGATAAATGCCTTGAG
ATTGATATCTTTACAGAGGAATGCTGGATTACATCTAATGGTGCGGAAAT
TGTCGACATCCTTGAAGAGATCGATACTCATACTCGTAAGCATTTCAGTG
CGACAACGCCCCATAGGTTTGAAATATATGACTTTGAGGCGCTGTACGCT
AACCTGCCAAAAATGTTTCTACAATCTACCATTCAGCATATACTGATGAC
TGTACTTAAACACCAGGAGCAACATGGCTTGCCCTCAGTGTTCATAAAAA
GGGGACATAATAATGACTATGCAGAACCAATAATAGTTCGAAAGGTAGCA
TGGGCAACTATACATCCGCAGCCTGTAACATGTGACAGTAAGAGACAATC
CTGGTTTGGTCCTGAGAAAATCCTTCTCTGGATTAAATATTATGTTCTCA
ATGAAGGGTTTGTCCAATTTGGTCCCCATATATATAGGCAGACATCTGGT
GTCTTTATAGGAACTGCCCCTGCCCCGGATCTAGTGAATGATTTTTCATT
TTGAACAGCTAAGCTACATAAGAACCCAGCCGCGACTAGGGGGATAACAG
CTTGCTGTGGATCGACAATGGATGGTATTGCTAAGATAGTGAATTCATGC
CTTGCGGCAATGAGACCAGTATTACATGCGCTATGGCGGGATAAATGCCT
TGAGATTGATATCTTTACAGAGGAATGCTGGATTACATCTAATGGTGCGG
AAATTGTCGACATCCTTGAAGAGATCGATACTCATACTCGTAAGCATTTC
AGTGCGACAACGCCCCATAGGTTTGAAATATATGACTTTGAGGCGCTGTA
CGCTAACCTGCCAAAAATGTTTCTACAATCTACCATTCAGCATATACTGA
TGACTGTACTTAAACACCAGGAGCAACATGGCTTGCCCTCAGTGTTCATA
AAAAGGGGACATAATAATGACTATGCAGAACCAATAATAGTTCGAAAGGT
AGCATGGGCAACTATACATCCGCAGCCTGTAACATGTGACAGTAAGAGAC
AATCCTGGTTTGGTCCTGAGAAAATCCTTCTCTGGATTAAATATTATGTT
CTCAATGAAGGGTTTGTCCAATTTGGTCCCCATATATATAGGCAGACATC
TGGTGTCTTTATAGGAACTGCCCCTGCCCCGGATCTAGTGAATGATTTTT
CATTTTGA
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