mRNA_H-elongata_contig175623.4580.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig175623.4580.1
Unique NamemRNA_H-elongata_contig175623.4580.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig175623.4580.1 vs. uniprot
Match: D7G7D0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7D0_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 2.090e-32
Identity = 55/66 (83.33%), Postives = 57/66 (86.36%), Query Frame = 1
Query:    1 WEEMGGNFLLRPPGGQTPKALLHFLGGAFVGAAPHLAYNCLLSGLGERGFLVVGTPYPLGFDYLTV 198
            WEEMGGNFLLRPP  Q PKAL+HFLGGAFVGAAPHL YN LLSGL E GFLVV TPYPLGFDYL +
Sbjct:  143 WEEMGGNFLLRPPDDQAPKALVHFLGGAFVGAAPHLTYNYLLSGLAEMGFLVVATPYPLGFDYLNL 208          
BLAST of mRNA_H-elongata_contig175623.4580.1 vs. uniprot
Match: A0A6H5KE48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE48_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 4.660e-31
Identity = 56/66 (84.85%), Postives = 57/66 (86.36%), Query Frame = 1
Query:    1 WEEMGGNFLLRPPGGQTPKALLHFLGGAFVGAAPHLAYNCLLSGLGERGFLVVGTPYPLGFDYLTV 198
            WEEMGGNFLLRPP  Q PKAL+HFLGGAFVGAAPHL YN LLSGL E GFLVV TPYPLGFDYL V
Sbjct:   54 WEEMGGNFLLRPPDDQAPKALVHFLGGAFVGAAPHLTYNYLLSGLAEMGFLVVATPYPLGFDYLNV 119          
BLAST of mRNA_H-elongata_contig175623.4580.1 vs. uniprot
Match: A0A4D9DB40_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DB40_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.670e-24
Identity = 49/68 (72.06%), Postives = 56/68 (82.35%), Query Frame = 1
Query:    1 WEEMGGNFLLRPPGGQT--PKALLHFLGGAFVGAAPHLAYNCLLSGLGERGFLVVGTPYPLGFDYLTV 198
            WEE+GGNFLLRPP  +T  PKA+LHFLGGAFVGAAPHL Y  LL+GL E+G+LVV TPY L FDY+ V
Sbjct:  202 WEEIGGNFLLRPPDHETSPPKAVLHFLGGAFVGAAPHLTYRYLLTGLAEQGYLVVATPYNLSFDYVQV 269          
BLAST of mRNA_H-elongata_contig175623.4580.1 vs. uniprot
Match: A0A0G4G6R9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4G6R9_VITBC)

HSP 1 Score: 101 bits (251), Expect = 1.990e-23
Identity = 46/64 (71.88%), Postives = 51/64 (79.69%), Query Frame = 1
Query:    1 WEEMGGNFLLRPPGGQTPKALLHFLGGAFVGAAPHLAYNCLLSGLGERGFLVVGTPYPLGFDYL 192
            WEEM GNFLLRPP    P+AL+HFLGGAFVGAAPHL Y   L+GL E+GFLVV +PY L FDYL
Sbjct:  389 WEEMSGNFLLRPPPDLRPRALIHFLGGAFVGAAPHLTYRYFLTGLAEQGFLVVASPYRLSFDYL 452          
BLAST of mRNA_H-elongata_contig175623.4580.1 vs. uniprot
Match: A0A0G4HPX5_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HPX5_9ALVE)

HSP 1 Score: 100 bits (250), Expect = 2.450e-23
Identity = 45/66 (68.18%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    1 WEEMGGNFLLRPPGGQTPKALLHFLGGAFVGAAPHLAYNCLLSGLGERGFLVVGTPYPLGFDYLTV 198
            WE   GNFLLRPP G+ PKALLHFLGGAFVGA+PH+ Y  LL  L ERG+LV+ TPY L FDYL++
Sbjct:  106 WEPFNGNFLLRPPEGRRPKALLHFLGGAFVGASPHIGYRFLLERLAERGYLVLATPYKLNFDYLSM 171          
BLAST of mRNA_H-elongata_contig175623.4580.1 vs. uniprot
Match: A0A7S0CE30_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CE30_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.690e-22
Identity = 42/65 (64.62%), Postives = 52/65 (80.00%), Query Frame = 1
Query:    1 WEEMGGNFLLRPPGGQTPKALLHFLGGAFVGAAPHLAYNCLLSGLGERGFLVVGTPYPLGFDYLT 195
            WEEM GN++L PP  Q P+AL+HFLGGAFVGAAPH+AY  +L  L +RG+L+V TP+ L FDYLT
Sbjct:   29 WEEMHGNYVLAPPSMQQPRALIHFLGGAFVGAAPHVAYRYILERLSDRGYLIVATPFNLSFDYLT 93          
BLAST of mRNA_H-elongata_contig175623.4580.1 vs. uniprot
Match: A0A7R9U991_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U991_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.550e-21
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 WEEMGGNFLLRPPGGQTPKALLHFLGGAFVGAAPHLAYNCLLSGLGERGFLVVGTPYPLGFDYLTV 198
            WEE+GGN +LRPP G  P+A++HFLGGAFVGA P +AY  LL  L + GFL+V TPY L FDYL +
Sbjct:  174 WEELGGNLVLRPPDGAQPRAVIHFLGGAFVGATPAIAYRYLLQNLAKEGFLIVATPYKLQFDYLKI 239          
BLAST of mRNA_H-elongata_contig175623.4580.1 vs. uniprot
Match: A0A7S1U6M1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U6M1_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 6.000e-20
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 WEEMGGNFLLRPPGGQTPKALLHFLGGAFVGAAPHLAYNCLLSGLGERGFLVVGTPYPLGFDYLTV 198
            WE++GGN +LRPP GQ  +A++HFLGGAFVGA P LAY  LL  L   GF++V TPY L FDYL++
Sbjct:  188 WEDIGGNLVLRPPEGQEARAVVHFLGGAFVGATPSLAYRYLLKRLAAEGFVIVATPYKLEFDYLSI 253          
BLAST of mRNA_H-elongata_contig175623.4580.1 vs. uniprot
Match: A0A7S2LK51_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LK51_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 8.670e-20
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 WEEMGGNFLLRPPGGQTPKALLHFLGGAFVGAAPHLAYNCLLSGLGERGFLVVGTPYPLGFDYLT 195
            WEE+ GN++LRPP  Q P+ALLHFLGGA VGA+P L Y  LL  L   G+L+V TPY L FD+LT
Sbjct:  170 WEELHGNYILRPPPSQPPRALLHFLGGALVGASPQLTYRYLLERLSSNGYLIVATPYQLSFDHLT 234          
BLAST of mRNA_H-elongata_contig175623.4580.1 vs. uniprot
Match: A0A7S0VVT9_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VVT9_9CRYP)

HSP 1 Score: 88.2 bits (217), Expect = 2.700e-19
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    1 WEEMGGNFLLRPPGGQTPKALLHFLGGAFVGAAPHLAYNCLLSGLGERGFLVVGTPYPLGFDYLTV 198
            WE +GG+F L PP G   + ++HFLGGAFVGAAPHL+Y  LL  L + G+ VV TPY L FDYL V
Sbjct:    8 WEALGGSFALEPPEGVPVRGVVHFLGGAFVGAAPHLSYRFLLESLADEGYAVVATPYKLSFDYLRV 73          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig175623.4580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7D0_ECTSI2.090e-3283.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KE48_9PHAE4.660e-3184.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9DB40_9STRA2.670e-2472.06Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A0G4G6R9_VITBC1.990e-2371.88Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A0G4HPX5_9ALVE2.450e-2368.18Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S0CE30_9STRA2.690e-2264.62Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7R9U991_9STRA2.550e-2162.12Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1U6M1_9STRA6.000e-2060.61Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2LK51_9STRA8.670e-2061.54Hypothetical protein n=2 Tax=Skeletonema marinoi T... [more]
A0A7S0VVT9_9CRYP2.700e-1959.09Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig175623contigH-elongata_contig175623:1108..1308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue4.1e-13
Seed eggNOG ortholog35128.Thaps263321
EggNOG free text desc.Protein of unknown function (DUF1350)
EggNOG OGs2QU9N@2759,2XC5G@2836,COG1084@1
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size192
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930018.3082097-UTR-H-elongata_contig175623:1107..11161622930018.3082097-UTR-H-elongata_contig175623:1107..1116Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig175623 1108..1116 +
1691679248.0305188-UTR-H-elongata_contig175623:1107..11161691679248.0305188-UTR-H-elongata_contig175623:1107..1116Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig175623 1108..1116 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930018.3212543-CDS-H-elongata_contig175623:1116..13081622930018.3212543-CDS-H-elongata_contig175623:1116..1308Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175623 1117..1308 +
1691679248.0493867-CDS-H-elongata_contig175623:1116..13081691679248.0493867-CDS-H-elongata_contig175623:1116..1308Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175623 1117..1308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig175623.4580.1prot_H-elongata_contig175623.4580.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig175623 1117..1308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig175623.4580.1

>prot_H-elongata_contig175623.4580.1 ID=prot_H-elongata_contig175623.4580.1|Name=mRNA_H-elongata_contig175623.4580.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MGGNFLLRPPGGQTPKALLHFLGGAFVGAAPHLAYNCLLSGLGERGFLVV
GTPYPLGFDYLTVA
back to top

mRNA from alignment at H-elongata_contig175623:1108..1308+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig175623.4580.1 ID=mRNA_H-elongata_contig175623.4580.1|Name=mRNA_H-elongata_contig175623.4580.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig175623:1108..1308+ (Himanthalia elongata Himel1 dioecious)
TGGGAAGAAATGGGCGGGAACTTTCTCCTGCGCCCCCCGGGCGGGCAAAC CCCGAAGGCGTTGCTCCACTTTCTCGGGGGCGCGTTCGTCGGGGCGGCGC CGCACCTGGCTTACAACTGCTTGTTGAGCGGACTGGGGGAGAGGGGGTTC CTGGTGGTGGGAACCCCTTACCCTCTAGGGTTCGACTACCTCACGGTGGC C
back to top

Coding sequence (CDS) from alignment at H-elongata_contig175623:1108..1308+

>mRNA_H-elongata_contig175623.4580.1 ID=mRNA_H-elongata_contig175623.4580.1|Name=mRNA_H-elongata_contig175623.4580.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig175623:1108..1308+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGGGAACTTTCTCCTGCGCCCCCCGGGCGGGCAAACCCCGAAGGC
GTTGCTCCACTTTCTCGGGGGCGCGTTCGTCGGGGCGGCGCCGCACCTGG
CTTACAACTGCTTGTTGAGCGGACTGGGGGAGAGGGGGTTCCTGGTGGTG
GGAACCCCTTACCCTCTAGGGTTCGACTACCTCACGGTGGCCATGGGCGG
GAACTTTCTCCTGCGCCCCCCGGGCGGGCAAACCCCGAAGGCGTTGCTCC
ACTTTCTCGGGGGCGCGTTCGTCGGGGCGGCGCCGCACCTGGCTTACAAC
TGCTTGTTGAGCGGACTGGGGGAGAGGGGGTTCCTGGTGGTGGGAACCCC
TTACCCTCTAGGGTTCGACTACCTCACGGTGGCC
back to top