mRNA_H-elongata_contig175593.4578.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig175593.4578.1 vs. uniprot
Match: D8LHQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ4_ECTSI) HSP 1 Score: 182 bits (463), Expect = 2.720e-56 Identity = 88/107 (82.24%), Postives = 93/107 (86.92%), Query Frame = 1
Query: 1 GLATSTVVIAIAALAGFPDNAAASAPLWVGPTKTLLDPILLYFEFAFVARIVLSWYPALDLNKIPQNLVAWPTEPILKPTRAIVPPAFGVDISPIVWVMICSFLHEI 321
GLAT V+A+AAL GFP AAA AP WVGPTK +LDP LLYFEFAFVARIVLSWYP LDLN PQNLVAWPTEPILKPTRAI+PPAFGVDISPIVWVMICS +HEI
Sbjct: 109 GLATGAAVVALAALGGFPGLAAAEAPAWVGPTKLVLDPTLLYFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILKPTRAIIPPAFGVDISPIVWVMICSLVHEI 215
BLAST of mRNA_H-elongata_contig175593.4578.1 vs. uniprot
Match: A0A6H5L5E9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E9_9PHAE) HSP 1 Score: 180 bits (456), Expect = 2.460e-55 Identity = 86/107 (80.37%), Postives = 93/107 (86.92%), Query Frame = 1
Query: 1 GLATSTVVIAIAALAGFPDNAAASAPLWVGPTKTLLDPILLYFEFAFVARIVLSWYPALDLNKIPQNLVAWPTEPILKPTRAIVPPAFGVDISPIVWVMICSFLHEI 321
GLAT V+A+AAL GFP AAA AP WVGPTK +LDP LL+FEFAFVARIVLSWYP LDLN PQNLVAWPTEPIL+PTRAI+PPAFGVDISPIVWVMICS +HEI
Sbjct: 101 GLATGATVVALAALGGFPGLAAAEAPAWVGPTKLVLDPTLLFFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILRPTRAIIPPAFGVDISPIVWVMICSLVHEI 207
BLAST of mRNA_H-elongata_contig175593.4578.1 vs. uniprot
Match: A0A836CA21_9STRA (YGGT family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA21_9STRA) HSP 1 Score: 145 bits (367), Expect = 3.090e-42 Identity = 68/85 (80.00%), Postives = 72/85 (84.71%), Query Frame = 1
Query: 67 ASAPLWVGPTKTLLDPILLYFEFAFVARIVLSWYPALDLNKIPQNLVAWPTEPILKPTRAIVPPAFGVDISPIVWVMICSFLHEI 321
A P WVGPT+ LDP LLY EFAF+ RIVLSWYP DLNK PQNLVAWPTEPILKPTRA+VPPAFGVDISPIVWVMI SF+ EI
Sbjct: 91 ADVPGWVGPTRAALDPFLLYMEFAFLCRIVLSWYPQTDLNKAPQNLVAWPTEPILKPTRAVVPPAFGVDISPIVWVMILSFVREI 175
BLAST of mRNA_H-elongata_contig175593.4578.1 vs. uniprot
Match: A0A7S3UWL9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWL9_HETAK) HSP 1 Score: 125 bits (314), Expect = 2.560e-34 Identity = 57/90 (63.33%), Postives = 70/90 (77.78%), Query Frame = 1
Query: 52 PDNAAASAPLWVGPTKTLLDPILLYFEFAFVARIVLSWYPALDLNKIPQNLVAWPTEPILKPTRAIVPPAFGVDISPIVWVMICSFLHEI 321
P A+A P WV PT T+L P L F A +ARIVLSWYP++DLN+ P NLVAWPTEP+L TR +VPPAFGVDISPIVW+M+ SF++E+
Sbjct: 73 PTVASAEVPAWVEPTSTVLGPFLAVFSLAMLARIVLSWYPSIDLNEAPFNLVAWPTEPLLAFTRGVVPPAFGVDISPIVWLMVASFVNEV 162
BLAST of mRNA_H-elongata_contig175593.4578.1 vs. uniprot
Match: A0A7S2V560_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V560_9STRA) HSP 1 Score: 119 bits (299), Expect = 4.140e-32 Identity = 53/90 (58.89%), Postives = 71/90 (78.89%), Query Frame = 1
Query: 52 PDNAAASAPLWVGPTKTLLDPILLYFEFAFVARIVLSWYPALDLNKIPQNLVAWPTEPILKPTRAIVPPAFGVDISPIVWVMICSFLHEI 321
P++A A+AP+WV PTK +LDP+L A +AR+VLSWYP++ L+K P + + PTEP+L+ TR +VPPAFGVD+SPIVW+MI SF HEI
Sbjct: 73 PESAFAAAPVWVAPTKLILDPLLNIVSLAMLARVVLSWYPSISLDKAPFSYLKAPTEPVLQVTREVVPPAFGVDVSPIVWIMISSFFHEI 162
BLAST of mRNA_H-elongata_contig175593.4578.1 vs. uniprot
Match: A0A7S2GHS6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GHS6_9STRA) HSP 1 Score: 118 bits (295), Expect = 1.410e-31 Identity = 53/107 (49.53%), Postives = 73/107 (68.22%), Query Frame = 1
Query: 1 GLATSTVVIAIAALAGFPDNAAASAPLWVGPTKTLLDPILLYFEFAFVARIVLSWYPALDLNKIPQNLVAWPTEPILKPTRAIVPPAFGVDISPIVWVMICSFLHEI 321
GL T + ++ L PD A A W GPT+ + DP+LL + + R+++SWYP ++LNK+P N++ WPTEP L+PTR ++PPAFGVDISPIVW+ I SF EI
Sbjct: 55 GLTTVAALSSVVLL--HPDLAIAYDNAWAGPTRAICDPLLLVGQTVMLFRVIISWYPEINLNKLPYNIITWPTEPFLRPTRKVIPPAFGVDISPIVWIAILSFFREI 159
BLAST of mRNA_H-elongata_contig175593.4578.1 vs. uniprot
Match: W7TNB9_9STRA (Integral membrane protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNB9_9STRA) HSP 1 Score: 112 bits (279), Expect = 3.720e-29 Identity = 50/84 (59.52%), Postives = 62/84 (73.81%), Query Frame = 1
Query: 70 SAPLWVGPTKTLLDPILLYFEFAFVARIVLSWYPALDLNKIPQNLVAWPTEPILKPTRAIVPPAFGVDISPIVWVMICSFLHEI 321
+A WV P K +++P+L AF+ RIVLSWYP +DLNK+P NL+AWPTEP L TR +VPPAFGVDISPI+W +FL EI
Sbjct: 73 AASSWVSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREI 156
BLAST of mRNA_H-elongata_contig175593.4578.1 vs. uniprot
Match: A0A7S2PCB6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PCB6_9STRA) HSP 1 Score: 112 bits (279), Expect = 4.140e-29 Identity = 48/85 (56.47%), Postives = 63/85 (74.12%), Query Frame = 1
Query: 67 ASAPLWVGPTKTLLDPILLYFEFAFVARIVLSWYPALDLNKIPQNLVAWPTEPILKPTRAIVPPAFGVDISPIVWVMICSFLHEI 321
A WV P K +LDP L FA + R+V+SWYP ++N++P N+V WPTEP+L+ TR +VPPAFGVDISPIVW+ + +FLHEI
Sbjct: 74 AETEAWVEPLKNVLDPSLNLLSFAMLCRVVISWYPETNVNEVPYNIVVWPTEPLLRVTRGVVPPAFGVDISPIVWLGVFTFLHEI 158
BLAST of mRNA_H-elongata_contig175593.4578.1 vs. uniprot
Match: A0A7S1FZ37_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FZ37_9STRA) HSP 1 Score: 111 bits (277), Expect = 7.260e-29 Identity = 48/80 (60.00%), Postives = 64/80 (80.00%), Query Frame = 1
Query: 82 WVGPTKTLLDPILLYFEFAFVARIVLSWYPALDLNKIPQNLVAWPTEPILKPTRAIVPPAFGVDISPIVWVMICSFLHEI 321
WV P +++LDP+L FA + RIV+SWYP +L+ +P +L WPTEP+L+PTRA+VPPAFGVDISP+VW+ I +FLHEI
Sbjct: 74 WVVPLQSVLDPLLNLLSFAMLCRIVISWYPNTNLSTLPYSLAVWPTEPLLRPTRAVVPPAFGVDISPMVWLGIFTFLHEI 153
BLAST of mRNA_H-elongata_contig175593.4578.1 vs. uniprot
Match: L1J932_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J932_GUITC) HSP 1 Score: 108 bits (271), Expect = 1.400e-28 Identity = 58/103 (56.31%), Postives = 70/103 (67.96%), Query Frame = 1
Query: 13 STVVIAIAALAGFPDNAAASAPLWVGPTKTLLDPILLYFEFAFVARIVLSWYPALDLNKIPQNLVAWPTEPILKPTRAIVPPAFGVDISPIVWVMICSFLHEI 321
STVVIA + L FP A+A+AP W+ PT++ LD L F F RI L+WYP +DLN+ PQN+VAWPTEP K R VPP FGVDISPIV + SF+ EI
Sbjct: 3 STVVIA-SILTAFPLAASAAAPEWLEPTRSSLDIGLALFSLLFFLRIPLTWYPQMDLNQFPQNIVAWPTEPFCKLVRLAVPPLFGVDISPIVLYGVLSFIREI 104 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig175593.4578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig175593.4578.1 >prot_H-elongata_contig175593.4578.1 ID=prot_H-elongata_contig175593.4578.1|Name=mRNA_H-elongata_contig175593.4578.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp MVPRAGSQQDTSEPGGLADGANLEANKGHCSTCVWCRHQPYRMGHDLLLPback to top mRNA from alignment at H-elongata_contig175593:521..1317+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig175593.4578.1 ID=mRNA_H-elongata_contig175593.4578.1|Name=mRNA_H-elongata_contig175593.4578.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=797bp|location=Sequence derived from alignment at H-elongata_contig175593:521..1317+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig175593:521..1317+ >mRNA_H-elongata_contig175593.4578.1 ID=mRNA_H-elongata_contig175593.4578.1|Name=mRNA_H-elongata_contig175593.4578.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig175593:521..1317+ (Himanthalia elongata Himel1 dioecious)back to top |