mRNA_H-elongata_contig175593.4578.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig175593.4578.1
Unique NamemRNA_H-elongata_contig175593.4578.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig175593.4578.1 vs. uniprot
Match: D8LHQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ4_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 2.720e-56
Identity = 88/107 (82.24%), Postives = 93/107 (86.92%), Query Frame = 1
Query:    1 GLATSTVVIAIAALAGFPDNAAASAPLWVGPTKTLLDPILLYFEFAFVARIVLSWYPALDLNKIPQNLVAWPTEPILKPTRAIVPPAFGVDISPIVWVMICSFLHEI 321
            GLAT   V+A+AAL GFP  AAA AP WVGPTK +LDP LLYFEFAFVARIVLSWYP LDLN  PQNLVAWPTEPILKPTRAI+PPAFGVDISPIVWVMICS +HEI
Sbjct:  109 GLATGAAVVALAALGGFPGLAAAEAPAWVGPTKLVLDPTLLYFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILKPTRAIIPPAFGVDISPIVWVMICSLVHEI 215          
BLAST of mRNA_H-elongata_contig175593.4578.1 vs. uniprot
Match: A0A6H5L5E9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E9_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 2.460e-55
Identity = 86/107 (80.37%), Postives = 93/107 (86.92%), Query Frame = 1
Query:    1 GLATSTVVIAIAALAGFPDNAAASAPLWVGPTKTLLDPILLYFEFAFVARIVLSWYPALDLNKIPQNLVAWPTEPILKPTRAIVPPAFGVDISPIVWVMICSFLHEI 321
            GLAT   V+A+AAL GFP  AAA AP WVGPTK +LDP LL+FEFAFVARIVLSWYP LDLN  PQNLVAWPTEPIL+PTRAI+PPAFGVDISPIVWVMICS +HEI
Sbjct:  101 GLATGATVVALAALGGFPGLAAAEAPAWVGPTKLVLDPTLLFFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILRPTRAIIPPAFGVDISPIVWVMICSLVHEI 207          
BLAST of mRNA_H-elongata_contig175593.4578.1 vs. uniprot
Match: A0A836CA21_9STRA (YGGT family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA21_9STRA)

HSP 1 Score: 145 bits (367), Expect = 3.090e-42
Identity = 68/85 (80.00%), Postives = 72/85 (84.71%), Query Frame = 1
Query:   67 ASAPLWVGPTKTLLDPILLYFEFAFVARIVLSWYPALDLNKIPQNLVAWPTEPILKPTRAIVPPAFGVDISPIVWVMICSFLHEI 321
            A  P WVGPT+  LDP LLY EFAF+ RIVLSWYP  DLNK PQNLVAWPTEPILKPTRA+VPPAFGVDISPIVWVMI SF+ EI
Sbjct:   91 ADVPGWVGPTRAALDPFLLYMEFAFLCRIVLSWYPQTDLNKAPQNLVAWPTEPILKPTRAVVPPAFGVDISPIVWVMILSFVREI 175          
BLAST of mRNA_H-elongata_contig175593.4578.1 vs. uniprot
Match: A0A7S3UWL9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWL9_HETAK)

HSP 1 Score: 125 bits (314), Expect = 2.560e-34
Identity = 57/90 (63.33%), Postives = 70/90 (77.78%), Query Frame = 1
Query:   52 PDNAAASAPLWVGPTKTLLDPILLYFEFAFVARIVLSWYPALDLNKIPQNLVAWPTEPILKPTRAIVPPAFGVDISPIVWVMICSFLHEI 321
            P  A+A  P WV PT T+L P L  F  A +ARIVLSWYP++DLN+ P NLVAWPTEP+L  TR +VPPAFGVDISPIVW+M+ SF++E+
Sbjct:   73 PTVASAEVPAWVEPTSTVLGPFLAVFSLAMLARIVLSWYPSIDLNEAPFNLVAWPTEPLLAFTRGVVPPAFGVDISPIVWLMVASFVNEV 162          
BLAST of mRNA_H-elongata_contig175593.4578.1 vs. uniprot
Match: A0A7S2V560_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V560_9STRA)

HSP 1 Score: 119 bits (299), Expect = 4.140e-32
Identity = 53/90 (58.89%), Postives = 71/90 (78.89%), Query Frame = 1
Query:   52 PDNAAASAPLWVGPTKTLLDPILLYFEFAFVARIVLSWYPALDLNKIPQNLVAWPTEPILKPTRAIVPPAFGVDISPIVWVMICSFLHEI 321
            P++A A+AP+WV PTK +LDP+L     A +AR+VLSWYP++ L+K P + +  PTEP+L+ TR +VPPAFGVD+SPIVW+MI SF HEI
Sbjct:   73 PESAFAAAPVWVAPTKLILDPLLNIVSLAMLARVVLSWYPSISLDKAPFSYLKAPTEPVLQVTREVVPPAFGVDVSPIVWIMISSFFHEI 162          
BLAST of mRNA_H-elongata_contig175593.4578.1 vs. uniprot
Match: A0A7S2GHS6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GHS6_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.410e-31
Identity = 53/107 (49.53%), Postives = 73/107 (68.22%), Query Frame = 1
Query:    1 GLATSTVVIAIAALAGFPDNAAASAPLWVGPTKTLLDPILLYFEFAFVARIVLSWYPALDLNKIPQNLVAWPTEPILKPTRAIVPPAFGVDISPIVWVMICSFLHEI 321
            GL T   + ++  L   PD A A    W GPT+ + DP+LL  +   + R+++SWYP ++LNK+P N++ WPTEP L+PTR ++PPAFGVDISPIVW+ I SF  EI
Sbjct:   55 GLTTVAALSSVVLL--HPDLAIAYDNAWAGPTRAICDPLLLVGQTVMLFRVIISWYPEINLNKLPYNIITWPTEPFLRPTRKVIPPAFGVDISPIVWIAILSFFREI 159          
BLAST of mRNA_H-elongata_contig175593.4578.1 vs. uniprot
Match: W7TNB9_9STRA (Integral membrane protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNB9_9STRA)

HSP 1 Score: 112 bits (279), Expect = 3.720e-29
Identity = 50/84 (59.52%), Postives = 62/84 (73.81%), Query Frame = 1
Query:   70 SAPLWVGPTKTLLDPILLYFEFAFVARIVLSWYPALDLNKIPQNLVAWPTEPILKPTRAIVPPAFGVDISPIVWVMICSFLHEI 321
            +A  WV P K +++P+L     AF+ RIVLSWYP +DLNK+P NL+AWPTEP L  TR +VPPAFGVDISPI+W    +FL EI
Sbjct:   73 AASSWVSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREI 156          
BLAST of mRNA_H-elongata_contig175593.4578.1 vs. uniprot
Match: A0A7S2PCB6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PCB6_9STRA)

HSP 1 Score: 112 bits (279), Expect = 4.140e-29
Identity = 48/85 (56.47%), Postives = 63/85 (74.12%), Query Frame = 1
Query:   67 ASAPLWVGPTKTLLDPILLYFEFAFVARIVLSWYPALDLNKIPQNLVAWPTEPILKPTRAIVPPAFGVDISPIVWVMICSFLHEI 321
            A    WV P K +LDP L    FA + R+V+SWYP  ++N++P N+V WPTEP+L+ TR +VPPAFGVDISPIVW+ + +FLHEI
Sbjct:   74 AETEAWVEPLKNVLDPSLNLLSFAMLCRVVISWYPETNVNEVPYNIVVWPTEPLLRVTRGVVPPAFGVDISPIVWLGVFTFLHEI 158          
BLAST of mRNA_H-elongata_contig175593.4578.1 vs. uniprot
Match: A0A7S1FZ37_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FZ37_9STRA)

HSP 1 Score: 111 bits (277), Expect = 7.260e-29
Identity = 48/80 (60.00%), Postives = 64/80 (80.00%), Query Frame = 1
Query:   82 WVGPTKTLLDPILLYFEFAFVARIVLSWYPALDLNKIPQNLVAWPTEPILKPTRAIVPPAFGVDISPIVWVMICSFLHEI 321
            WV P +++LDP+L    FA + RIV+SWYP  +L+ +P +L  WPTEP+L+PTRA+VPPAFGVDISP+VW+ I +FLHEI
Sbjct:   74 WVVPLQSVLDPLLNLLSFAMLCRIVISWYPNTNLSTLPYSLAVWPTEPLLRPTRAVVPPAFGVDISPMVWLGIFTFLHEI 153          
BLAST of mRNA_H-elongata_contig175593.4578.1 vs. uniprot
Match: L1J932_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J932_GUITC)

HSP 1 Score: 108 bits (271), Expect = 1.400e-28
Identity = 58/103 (56.31%), Postives = 70/103 (67.96%), Query Frame = 1
Query:   13 STVVIAIAALAGFPDNAAASAPLWVGPTKTLLDPILLYFEFAFVARIVLSWYPALDLNKIPQNLVAWPTEPILKPTRAIVPPAFGVDISPIVWVMICSFLHEI 321
            STVVIA + L  FP  A+A+AP W+ PT++ LD  L  F   F  RI L+WYP +DLN+ PQN+VAWPTEP  K  R  VPP FGVDISPIV   + SF+ EI
Sbjct:    3 STVVIA-SILTAFPLAASAAAPEWLEPTRSSLDIGLALFSLLFFLRIPLTWYPQMDLNQFPQNIVAWPTEPFCKLVRLAVPPLFGVDISPIVLYGVLSFIREI 104          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig175593.4578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHQ4_ECTSI2.720e-5682.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5E9_9PHAE2.460e-5580.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CA21_9STRA3.090e-4280.00YGGT family-domain-containing protein n=1 Tax=Trib... [more]
A0A7S3UWL9_HETAK2.560e-3463.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V560_9STRA4.140e-3258.89Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2GHS6_9STRA1.410e-3149.53Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W7TNB9_9STRA3.720e-2959.52Integral membrane protein n=2 Tax=Nannochloropsis ... [more]
A0A7S2PCB6_9STRA4.140e-2956.47Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1FZ37_9STRA7.260e-2960.00Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
L1J932_GUITC1.400e-2856.31Uncharacterized protein n=1 Tax=Guillardia theta (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig175593contigH-elongata_contig175593:521..1317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size324
Cds size162
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig175593.4578.1prot_H-elongata_contig175593.4578.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig175593 682..1317 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930017.8389614-UTR-H-elongata_contig175593:520..6811622930017.8389614-UTR-H-elongata_contig175593:520..681Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig175593 521..681 +
1691679247.7833838-UTR-H-elongata_contig175593:520..6811691679247.7833838-UTR-H-elongata_contig175593:520..681Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig175593 521..681 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930017.8578486-CDS-H-elongata_contig175593:681..6941622930017.8578486-CDS-H-elongata_contig175593:681..694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175593 682..694 +
1691679247.8008325-CDS-H-elongata_contig175593:681..6941691679247.8008325-CDS-H-elongata_contig175593:681..694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175593 682..694 +
1622930017.8732266-CDS-H-elongata_contig175593:1168..13171622930017.8732266-CDS-H-elongata_contig175593:1168..1317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175593 1169..1317 +
1691679247.8123085-CDS-H-elongata_contig175593:1168..13171691679247.8123085-CDS-H-elongata_contig175593:1168..1317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175593 1169..1317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig175593.4578.1

>prot_H-elongata_contig175593.4578.1 ID=prot_H-elongata_contig175593.4578.1|Name=mRNA_H-elongata_contig175593.4578.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
MVPRAGSQQDTSEPGGLADGANLEANKGHCSTCVWCRHQPYRMGHDLLLP
ARNP
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mRNA from alignment at H-elongata_contig175593:521..1317+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig175593.4578.1 ID=mRNA_H-elongata_contig175593.4578.1|Name=mRNA_H-elongata_contig175593.4578.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=797bp|location=Sequence derived from alignment at H-elongata_contig175593:521..1317+ (Himanthalia elongata Himel1 dioecious)
GGGTTGGCGACAAGCACCGTTGTCATCGCAATCGCCGCTCTCGCGGGGTT TCCAGATAACGCGGCTGCCTCGGCACCTTTGTGGGTGGGGCCGACCAAGA CGCTCCTGGATCCGATCCTCCTCTACTTCGAGTTTGCCTTCGTCGCCCGC ATAGTGTTATCATGGTACCCCGCGGTAAGTTCCACCAGCATCCAGATCAT GGTATACCGCGTTTGTTGCAGTACTCTCTCTGGCAGTAAGCATACATGTT GGGGGGTGGTTTACAGTGGGATGTCGTACCGTATTGGGGGGATATCGTAC CATGGAATGCCATACCGTCATCATGGCGTGGGATACCATACCATGATTGA TCACGTGGGCTAGGTATTGATATTTATTATACTATACTATAGTATTAAAC CGTAGTAGCTATTATACTATACTATAATACCATAATAGCTATTAGACTAT ATTATACTATACGATACTATTAAATGTGCCATCGGTGACCGAGGAAGTCA GGAGAGTTGCCCCCAGGCAGTTTCTCCTTCCTCTAGTGCCCGTTGTGTAT GCCCCCCTATACCTTACACCTTATATACTACTAATTCAAGCTCCTCCGAA CACCCGCACTTTCTTTGATTTTGTCCGACGCTGCCCCGGATATTACAGCT GGATCTCAACAAGATACCTCAGAACCTGGTGGCCTGGCCGACGGAGCCAA TCTTGAAGCCAACAAGGGCCATTGTTCCACCTGCGTTTGGTGTCGACATC AGCCCTATCGTATGGGTCATGATCTGCTCCTTCCTGCACGAAATCCT
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Coding sequence (CDS) from alignment at H-elongata_contig175593:521..1317+

>mRNA_H-elongata_contig175593.4578.1 ID=mRNA_H-elongata_contig175593.4578.1|Name=mRNA_H-elongata_contig175593.4578.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig175593:521..1317+ (Himanthalia elongata Himel1 dioecious)
ATGGTACCCCGCGATGGTACCCCGCGCTGGATCTCAACAAGATACCTCAG
AACCTGGTGGCCTGGCCGACGGAGCCAATCTTGAAGCCAACAAGGGCCAT
TGTTCCACCTGCGTTTGGTGTCGACATCAGCCCTATCGTATGGGTCATGA
TCTGCTCCTTCCTGCACGAAATCCTCTGGATCTCAACAAGATACCTCAGA
ACCTGGTGGCCTGGCCGACGGAGCCAATCTTGAAGCCAACAAGGGCCATT
GTTCCACCTGCGTTTGGTGTCGACATCAGCCCTATCGTATGGGTCATGAT
CTGCTCCTTCCTGCACGAAATCCT
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