mRNA_H-elongata_contig175588.4577.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig175588.4577.1
Unique NamemRNA_H-elongata_contig175588.4577.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig175588.4577.1 vs. uniprot
Match: UPI00092ED33F (uncharacterized protein LOC109339874 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092ED33F)

HSP 1 Score: 60.8 bits (146), Expect = 4.290e-9
Identity = 29/72 (40.28%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    7 PADWWVTYGKIGLPDLAKVAIRRTSKVSASAGLERNWSLYGDVMGGRHARMGPERARKLVFVRANLRLQDKD 222
            P  WW +YG  G P+L ++AIR  S+  +S+G ERNWS++  +   +  R+  ++   LV+VR NLRLQ ++
Sbjct:  260 PDQWWESYG-CGAPNLQQLAIRILSQTYSSSGCERNWSVFEHIHSNKRNRLEHQKLNDLVYVRYNLRLQQRN 330          
BLAST of mRNA_H-elongata_contig175588.4577.1 vs. uniprot
Match: A0A6A5M7K7_LUPAL (Phosphopyruvate hydratase n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5M7K7_LUPAL)

HSP 1 Score: 60.8 bits (146), Expect = 4.410e-9
Identity = 29/73 (39.73%), Postives = 45/73 (61.64%), Query Frame = 1
Query:    1 IFPADWWVTYGKIGLPDLAKVAIRRTSKVSASAGLERNWSLYGDVMGGRHARMGPERARKLVFVRANLRLQDK 219
            + P  WW TYG    P+L K+A+R  S+  +++G ERNWS++  +   +  R+  ++   LVFVR NLRLQ +
Sbjct:  674 VMPDQWWETYG-CRTPNLQKLAVRVLSQTCSASGCERNWSVFEHIHTNKRNRLEHQKLNDLVFVRYNLRLQQR 745          
BLAST of mRNA_H-elongata_contig175588.4577.1 vs. uniprot
Match: UPI00092EBF14 (uncharacterized protein LOC109333050 n=2 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092EBF14)

HSP 1 Score: 60.1 bits (144), Expect = 6.440e-9
Identity = 28/72 (38.89%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    7 PADWWVTYGKIGLPDLAKVAIRRTSKVSASAGLERNWSLYGDVMGGRHARMGPERARKLVFVRANLRLQDKD 222
            P  WW +YG  G P+L ++AIR  S+  +++G ERNWS++  +   +  R+  ++   LV+VR NLRLQ ++
Sbjct:  119 PDQWWESYG-CGAPNLQQLAIRILSQTCSASGCERNWSVFEHIHSNKRNRLEHQKLNDLVYVRYNLRLQQRN 189          
BLAST of mRNA_H-elongata_contig175588.4577.1 vs. uniprot
Match: A0A6A5MXA4_LUPAL (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5MXA4_LUPAL)

HSP 1 Score: 57.8 bits (138), Expect = 1.570e-8
Identity = 28/69 (40.58%), Postives = 43/69 (62.32%), Query Frame = 1
Query:   13 DWWVTYGKIGLPDLAKVAIRRTSKVSASAGLERNWSLYGDVMGGRHARMGPERARKLVFVRANLRLQDK 219
             WW TYG    P+L K+A+R  S+  +++G ERNWS++  +   +  R+  ++   LVFVR NLRLQ +
Sbjct:    4 QWWETYG-CRTPNLQKLAVRVLSQTCSASGCERNWSVFEHIHTNKRNRLEHQKLNDLVFVRYNLRLQQR 71          
BLAST of mRNA_H-elongata_contig175588.4577.1 vs. uniprot
Match: A0A2K3K1Y4_TRIPR (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3K1Y4_TRIPR)

HSP 1 Score: 56.6 bits (135), Expect = 1.910e-8
Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 1
Query:   13 DWWVTYGKIGLPDLAKVAIRRTSKVSASAGLERNWSLYGDVMGGRHARMGPERARKLVFVRANLRLQDKD 222
             WW  YG    P+L K+AIR  S+  +++G ERNWS++  +   +  R+  ++   LVFVR NLRLQ+++
Sbjct:    2 QWWEMYGTEA-PNLKKLAIRILSQTCSASGCERNWSVFEHIHSKKRNRLEHQKLNDLVFVRYNLRLQNRN 70          
BLAST of mRNA_H-elongata_contig175588.4577.1 vs. uniprot
Match: A0A6A5N2L1_LUPAL (BED-type domain-containing protein n=2 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5N2L1_LUPAL)

HSP 1 Score: 58.9 bits (141), Expect = 2.090e-8
Identity = 28/73 (38.36%), Postives = 45/73 (61.64%), Query Frame = 1
Query:    1 IFPADWWVTYGKIGLPDLAKVAIRRTSKVSASAGLERNWSLYGDVMGGRHARMGPERARKLVFVRANLRLQDK 219
            + P  WW TY +   P+L K+A+R  S+  +++G ERNWS++  +   +  R+  ++   LVFVR NLRLQ +
Sbjct:  433 VMPDQWWETY-RCCTPNLQKLAVRVLSQTCSASGCERNWSVFEHIHTNKRNRLENQKLNDLVFVRYNLRLQQR 504          
BLAST of mRNA_H-elongata_contig175588.4577.1 vs. uniprot
Match: UPI00092F4EA0 (uncharacterized protein LOC109333975 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092F4EA0)

HSP 1 Score: 58.2 bits (139), Expect = 3.790e-8
Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 1
Query:   13 DWWVTYGKIGLPDLAKVAIRRTSKVSASAGLERNWSLYGDVMGGRHARMGPERARKLVFVRANLRLQDKD 222
             WW TYG    P+L K+A+R  S+  +++G ERNWS++  +   +  R+  ++   LVFVR NLRLQ ++
Sbjct:  248 QWWETYG-CRAPNLQKLAVRVLSQTCSASGCERNWSVFEHIHTNKRNRLEHQKLNDLVFVRYNLRLQQRN 316          
BLAST of mRNA_H-elongata_contig175588.4577.1 vs. uniprot
Match: UPI000E701CD2 (uncharacterized protein LOC113288024 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E701CD2)

HSP 1 Score: 57.4 bits (137), Expect = 7.200e-8
Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = 1
Query:    7 PADWWVTYGKIGLPDLAKVAIRRTSKVSASAGLERNWSLYGDVMGGRHARMGPERARKLVFVRANLRLQDK 219
            PA WW +YG    P+L +VA+R  S   ++ G ERNWS +  V   R  R+  +R   LV+V+ NLRL ++
Sbjct:  282 PALWWNSYG-YSAPELQRVAVRVLSSTCSATGCERNWSEFEQVHTKRRNRLSQQRLNALVYVKYNLRLNER 351          
BLAST of mRNA_H-elongata_contig175588.4577.1 vs. uniprot
Match: A0A2Z6NFM0_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NFM0_TRISU)

HSP 1 Score: 57.4 bits (137), Expect = 7.290e-8
Identity = 28/74 (37.84%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    1 IFPADWWVTYGKIGLPDLAKVAIRRTSKVSASAGLERNWSLYGDVMGGRHARMGPERARKLVFVRANLRLQDKD 222
            + P  WW  YG    P+L K+AI   S+  +++G ERNWS++  +   +  R+  ++   LVFVR NLRLQ+++
Sbjct:  508 VLPDQWWEMYGTEA-PNLKKLAIWILSQTCSASGCERNWSVFEHIQSKKRNRLEHQKLNDLVFVRYNLRLQNRN 580          
BLAST of mRNA_H-elongata_contig175588.4577.1 vs. uniprot
Match: UPI00092F8957 (uncharacterized protein LOC109329267 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092F8957)

HSP 1 Score: 55.8 bits (133), Expect = 2.500e-7
Identity = 26/69 (37.68%), Postives = 42/69 (60.87%), Query Frame = 1
Query:   13 DWWVTYGKIGLPDLAKVAIRRTSKVSASAGLERNWSLYGDVMGGRHARMGPERARKLVFVRANLRLQDK 219
             WW TYG    P+L ++ +R  S+  +++G ERNWS++  +   +  R+  ++   LVFVR NLRLQ +
Sbjct:  263 QWWETYG-CRTPNLQRLTVRVLSQTCSASGCERNWSVFEHIHSNKRNRLEHQKLNDLVFVRYNLRLQQR 330          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig175588.4577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
UPI00092ED33F4.290e-940.28uncharacterized protein LOC109339874 n=1 Tax=Lupin... [more]
A0A6A5M7K7_LUPAL4.410e-939.73Phosphopyruvate hydratase n=1 Tax=Lupinus albus Ta... [more]
UPI00092EBF146.440e-938.89uncharacterized protein LOC109333050 n=2 Tax=Lupin... [more]
A0A6A5MXA4_LUPAL1.570e-840.58Dimer_Tnp_hAT domain-containing protein n=1 Tax=Lu... [more]
A0A2K3K1Y4_TRIPR1.910e-840.00Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A6A5N2L1_LUPAL2.090e-838.36BED-type domain-containing protein n=2 Tax=Lupinus... [more]
UPI00092F4EA03.790e-840.00uncharacterized protein LOC109333975 n=1 Tax=Lupin... [more]
UPI000E701CD27.200e-840.85uncharacterized protein LOC113288024 n=1 Tax=Papav... [more]
A0A2Z6NFM0_TRISU7.290e-837.84Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
UPI00092F89572.500e-737.68uncharacterized protein LOC109329267 n=1 Tax=Lupin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig175588contigH-elongata_contig175588:1015..1236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.2
Seed ortholog evalue2.3e-07
Seed eggNOG ortholog3880.AES94261
EggNOG free text desc.source UniProtKB
EggNOG OGs2C7QK@1,2QUNQ@2759,37QB2@33090,3GCE5@35493,4JRQZ@91835
COG Functional cat.S
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930017.785275-CDS-H-elongata_contig175588:1014..12361622930017.785275-CDS-H-elongata_contig175588:1014..1236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175588 1015..1236 +
1691679247.7712455-CDS-H-elongata_contig175588:1014..12361691679247.7712455-CDS-H-elongata_contig175588:1014..1236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175588 1015..1236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig175588.4577.1prot_H-elongata_contig175588.4577.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig175588 1015..1236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig175588.4577.1

>prot_H-elongata_contig175588.4577.1 ID=prot_H-elongata_contig175588.4577.1|Name=mRNA_H-elongata_contig175588.4577.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
IFPADWWVTYGKIGLPDLAKVAIRRTSKVSASAGLERNWSLYGDVMGGRH
ARMGPERARKLVFVRANLRLQDKD
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mRNA from alignment at H-elongata_contig175588:1015..1236+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig175588.4577.1 ID=mRNA_H-elongata_contig175588.4577.1|Name=mRNA_H-elongata_contig175588.4577.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at H-elongata_contig175588:1015..1236+ (Himanthalia elongata Himel1 dioecious)
ATATTCCCCGCAGACTGGTGGGTAACGTACGGAAAAATCGGCCTGCCGGA CTTGGCCAAAGTAGCCATTCGCAGGACTTCAAAGGTATCTGCATCGGCAG GATTGGAGCGCAATTGGAGTCTGTACGGAGATGTCATGGGTGGAAGGCAC GCACGGATGGGCCCCGAGCGTGCCAGGAAATTGGTGTTCGTGAGAGCTAA CCTGAGGCTGCAGGATAAAGAT
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Coding sequence (CDS) from alignment at H-elongata_contig175588:1015..1236+

>mRNA_H-elongata_contig175588.4577.1 ID=mRNA_H-elongata_contig175588.4577.1|Name=mRNA_H-elongata_contig175588.4577.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig175588:1015..1236+ (Himanthalia elongata Himel1 dioecious)
ATATTCCCCGCAGACTGGTGGGTAACGTACGGAAAAATCGGCCTGCCGGA
CTTGGCCAAAGTAGCCATTCGCAGGACTTCAAAGGTATCTGCATCGGCAG
GATTGGAGCGCAATTGGAGTCTGTACGGAGATGTCATGGGTGGAAGGCAC
GCACGGATGGGCCCCGAGCGTGCCAGGAAATTGGTGTTCGTGAGAGCTAA
CCTGAGGCTGCAGGATAAAGATATATTCCCCGCAGACTGGTGGGTAACGT
ACGGAAAAATCGGCCTGCCGGACTTGGCCAAAGTAGCCATTCGCAGGACT
TCAAAGGTATCTGCATCGGCAGGATTGGAGCGCAATTGGAGTCTGTACGG
AGATGTCATGGGTGGAAGGCACGCACGGATGGGCCCCGAGCGTGCCAGGA
AATTGGTGTTCGTGAGAGCTAACCTGAGGCTGCAGGATAAAGAT
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