mRNA_H-elongata_contig175495.4576.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig175495.4576.1
Unique NamemRNA_H-elongata_contig175495.4576.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig175495.4576.1 vs. uniprot
Match: D8LCN8_ECTSI (Heat shock protein 70 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN8_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 6.710e-9
Identity = 59/107 (55.14%), Postives = 70/107 (65.42%), Query Frame = 1 
Query:    1 PEGLILSVGMGASFLDVAVISPNASPDANPKTSVDASSPSASRGGVGGDGGAGAGITSXXXXXXXXXXXXXXXXXEEERMEYRVLASVGNPACGGLDMDYLVARALL 321
            P+ LIL+VGMGASFLDV++I+P    +A+P ++  A                      XXXXXXXXXXXXXXX  E + MEYRV AS G+ ACGGLDMDYLVARALL
Sbjct:  334 PDDLILAVGMGASFLDVSLIAPTR--EASPPSADSAXXXXXXXXXX---------XXXXXXXXXXXXXXXXXXQAEAQGMEYRVRASAGDSACGGLDMDYLVARALL 429
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig175495.4576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCN8_ECTSI6.710e-955.14Heat shock protein 70 n=1 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig175495contigH-elongata_contig175495:443..808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size330
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig175495.4576.1prot_H-elongata_contig175495.4576.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig175495 443..781 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930017.7038388-CDS-H-elongata_contig175495:442..5421622930017.7038388-CDS-H-elongata_contig175495:442..542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175495 443..542 -
1691679247.7447276-CDS-H-elongata_contig175495:442..5421691679247.7447276-CDS-H-elongata_contig175495:442..542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175495 443..542 -
1622930017.7192307-CDS-H-elongata_contig175495:578..7811622930017.7192307-CDS-H-elongata_contig175495:578..781Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175495 579..781 -
1691679247.7534757-CDS-H-elongata_contig175495:578..7811691679247.7534757-CDS-H-elongata_contig175495:578..781Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175495 579..781 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930017.7342587-UTR-H-elongata_contig175495:781..8081622930017.7342587-UTR-H-elongata_contig175495:781..808Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig175495 782..808 -
1691679247.7618003-UTR-H-elongata_contig175495:781..8081691679247.7618003-UTR-H-elongata_contig175495:781..808Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig175495 782..808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig175495.4576.1

>prot_H-elongata_contig175495.4576.1 ID=prot_H-elongata_contig175495.4576.1|Name=mRNA_H-elongata_contig175495.4576.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MGASFLDVAVISPNASPDANPKTSVDASSPSASRGGVGGDGGAGAGITSS
KKKKRKGGGKGNSGGSEEERMEYRVLASVGNPACGGLDMDYLVARALLVR
*
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mRNA from alignment at H-elongata_contig175495:443..808-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig175495.4576.1 ID=mRNA_H-elongata_contig175495.4576.1|Name=mRNA_H-elongata_contig175495.4576.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=366bp|location=Sequence derived from alignment at H-elongata_contig175495:443..808- (Himanthalia elongata Himel1 dioecious)
CCGGAGGGCCTGATCCTCTCCGTCGGCATGGGCGCGAGCTTCCTGGACGT
GGCCGTCATCTCCCCGAACGCCTCCCCGGATGCAAACCCCAAGACCTCCG
TCGATGCTTCGTCTCCCTCTGCCTCTAGAGGAGGAGTTGGTGGAGACGGA
GGCGCCGGCGCCGGTATTACCAGTTCGAAGAAGAAAAAGAGGAAGGGTGG
CGGGAAGGGTAACAGCGGAGGATCGGAGGAGTTGGATGCGGCGATGGCGT
CGGGGAAAGGGGGGAGGGAGAGAATGGAGTACCGCGTGTTGGCTTCGGTG
GGAAACCCGGCGTGCGGTGGTCTGGACATGGACTACCTCGTGGCAAGGGC
TTTGTTGGTGAGATAG
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Coding sequence (CDS) from alignment at H-elongata_contig175495:443..808-

>mRNA_H-elongata_contig175495.4576.1 ID=mRNA_H-elongata_contig175495.4576.1|Name=mRNA_H-elongata_contig175495.4576.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig175495:443..808- (Himanthalia elongata Himel1 dioecious)
ATGGGCGCGAGCTTCCTGGACGTGGCCGTCATCTCCCCGAACGCCTCCCC
GGATGCAAACCCCAAGACCTCCGTCGATGCTTCGTCTCCCTCTGCCTCTA
GAGGAGGAGTTGGTGGAGACGGAGGCGCCGGCGCCGGTATTACCAGTTCG
AAGAAGAAAAAGAGGAAGGGTGGCGGGAAGGGTAACAGCGGAGGATCGGA
GGAATGGGCGCGAGCTTCCTGGACGTGGCCGTCATCTCCCCGAACGCCTC
CCCGGATGCAAACCCCAAGACCTCCGTCGATGCTTCGTCTCCCTCTGCCT
CTAGAGGAGGAGTTGGTGGAGACGGAGGCGCCGGCGCCGGTATTACCAGT
TCGAAGAAGAAAAAGAGGAAGGGTGGCGGGAAGGGTAACAGCGGAGGATC
GGAGGAGGAGAGAATGGAGTACCGCGTGTTGGCTTCGGTGGGAAACCCGG
CGTGCGGTGGTCTGGACATGGACTACCTCGTGGCAAGGGCTTTGTTGGTG
AGATAGGGAGAGAATGGAGTACCGCGTGTTGGCTTCGGTGGGAAACCCGG
CGTGCGGTGGTCTGGACATGGACTACCTCGTGGCAAGGGCTTTGTTGGTG
AGATAG
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