mRNA_H-elongata_contig17543.4575.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17543.4575.1
Unique NamemRNA_H-elongata_contig17543.4575.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17543.4575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17543contigH-elongata_contig17543:2645..3458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size785
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17543.4575.1prot_H-elongata_contig17543.4575.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17543 2776..3239 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930017.5480623-UTR-H-elongata_contig17543:2644..27751622930017.5480623-UTR-H-elongata_contig17543:2644..2775Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17543 2645..2775 -
1691679247.694197-UTR-H-elongata_contig17543:2644..27751691679247.694197-UTR-H-elongata_contig17543:2644..2775Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17543 2645..2775 -
1622930017.5927017-UTR-H-elongata_contig17543:3239..34581622930017.5927017-UTR-H-elongata_contig17543:3239..3458Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17543 3240..3458 -
1691679247.7345142-UTR-H-elongata_contig17543:3239..34581691679247.7345142-UTR-H-elongata_contig17543:3239..3458Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17543 3240..3458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930017.5639586-CDS-H-elongata_contig17543:2775..28091622930017.5639586-CDS-H-elongata_contig17543:2775..2809Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17543 2776..2809 -
1691679247.710146-CDS-H-elongata_contig17543:2775..28091691679247.710146-CDS-H-elongata_contig17543:2775..2809Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17543 2776..2809 -
1622930017.5810304-CDS-H-elongata_contig17543:2838..32391622930017.5810304-CDS-H-elongata_contig17543:2838..3239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17543 2839..3239 -
1691679247.721176-CDS-H-elongata_contig17543:2838..32391691679247.721176-CDS-H-elongata_contig17543:2838..3239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17543 2839..3239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17543.4575.1

>prot_H-elongata_contig17543.4575.1 ID=prot_H-elongata_contig17543.4575.1|Name=mRNA_H-elongata_contig17543.4575.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp
MRDGVVETLQAEMGRVSISESARTLLPFLLVPPPFSSPTHAGAEGGEIPS
APQEATVKSPVTSASPPATTATAASIVPLRPPDGPSSWESMRFSRQSIAP
STVSLQAYLMAEAAAVAEAPEVIPAPSTSTTADIGGCNCDFFKP*
back to top

mRNA from alignment at H-elongata_contig17543:2645..3458-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17543.4575.1 ID=mRNA_H-elongata_contig17543.4575.1|Name=mRNA_H-elongata_contig17543.4575.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=814bp|location=Sequence derived from alignment at H-elongata_contig17543:2645..3458- (Himanthalia elongata Himel1 dioecious)
TCTGCCTCAAAAGCAGCAAAAGGTGTGCCCGGAGCTGCTCTTGCACTTGG
CGAGCGGAGCGAGGGACTGGCCGCGCGTAATGGGCGAGATAGTTCTCCTC
CTGGGGTTAACGGAGTCCATGCGACAGAGAGCGCCTCGGCGGACGTGGCG
GCACTCGACAGTGAAGGAGCGAAGAGAGGAAACGATAAAGCCAACGACGA
CTGCCGTGTAGGCGATGAGATGCGCGACGGCGTTGTGGAAACCCTTCAAG
CAGAGATGGGACGGGTTTCCATCTCCGAGAGCGCTCGGACGCTATTGCCC
TTTTTGCTGGTGCCACCACCATTTTCTTCGCCTACTCATGCTGGTGCAGA
AGGGGGTGAGATACCTTCTGCGCCGCAAGAAGCGACGGTGAAATCGCCGG
TCACTTCCGCGTCGCCCCCAGCAACGACGGCGACAGCAGCGTCAATTGTC
CCTCTTCGCCCTCCGGATGGACCGTCCTCTTGGGAAAGTATGCGATTCAG
TCGGCAAAGTATTGCTCCGTCAACGGTGTCCCTCCAGGCGTATCTCATGG
CTGAGGCTGCCGCCGTTGCCGAGGCACCCGAAGTCATACCCGCACCTTCC
ACATCTACAACTGCCGATATGTGCACCGCGCGCGCTGCGGTGCCGCCAGC
GGCGGGTGTAACTGCGACTTCTTCAAGCCATAGAGTTCTTCGCGCCGAGC
AGGAAGCGGAAAGCAACAACAGTAAGGCTGGGAAGTCCACCAACTCTTCG
TCGATGACGACGACGGCCAGACGAAAGAGCGTAACCTTCGCCGAGGGTAC
AAAGGAGCCTCCGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig17543:2645..3458-

>mRNA_H-elongata_contig17543.4575.1 ID=mRNA_H-elongata_contig17543.4575.1|Name=mRNA_H-elongata_contig17543.4575.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig17543:2645..3458- (Himanthalia elongata Himel1 dioecious)
ATGCGCGACGGCGTTGTGGAAACCCTTCAAGCAGAGATGGGACGGGTTTC
CATCTCCGAGAGCGCTCGGACGCTATTGCCCTTTTTGCTGGTGCCACCAC
CATTTTCTTCGCCTACTCATGCTGGTGCAGAAGGGGGTGAGATACCTTCT
GCGCCGCAAGAAGCGACGGTGAAATCGCCGGTCACTTCCGCGTCGCCCCC
AGCAACGACGGCGACAGCAGCGTCAATTGTCCCTCTTCGCCCTCCGGATG
GACCGTCCTCTTGGGAAAGTATGCGATTCAGTCGGCAAAGTATTGCTCCG
TCAACGGTGTCCCTCCAGGCGTATCTCATGGCTGAGGCTGCCGCCGTTGC
CGAGGCACCCGAAGTCATACCCGCACCTTCCACATCTACAACTGCCGATA
TATGCGCGACGGCGTTGTGGAAACCCTTCAAGCAGAGATGGGACGGGTTT
CCATCTCCGAGAGCGCTCGGACGCTATTGCCCTTTTTGCTGGTGCCACCA
CCATTTTCTTCGCCTACTCATGCTGGTGCAGAAGGGGGTGAGATACCTTC
TGCGCCGCAAGAAGCGACGGTGAAATCGCCGGTCACTTCCGCGTCGCCCC
CAGCAACGACGGCGACAGCAGCGTCAATTGTCCCTCTTCGCCCTCCGGAT
GGACCGTCCTCTTGGGAAAGTATGCGATTCAGTCGGCAAAGTATTGCTCC
GTCAACGGTGTCCCTCCAGGCGTATCTCATGGCTGAGGCTGCCGCCGTTG
CCGAGGCACCCGAAGTCATACCCGCACCTTCCACATCTACAACTGCCGAT
ATCGGCGGGTGTAACTGCGACTTCTTCAAGCCATAGCGGCGGGTGTAACT
GCGACTTCTTCAAGCCATAG
back to top