|
|
Homology
BLAST of mRNA_H-elongata_contig17533.4572.1 vs. uniprot
Match: D8LTR1_ECTSI (Kinesin light chain-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTR1_ECTSI) HSP 1 Score: 79.3 bits (194), Expect = 4.130e-13 Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 1
Query: 1 ISAAEKRRHREQEVRKGLERAELELGPVHPTVAALLFLLSRVVQERGDYAEAEDLCARAVDVYE 192
+S+AE+ R RE EVR L RAE E+G HP VA LLFLLSR+VQERGDY EAE+LC RA+ +YE
Sbjct: 297 VSSAERER-REVEVRDALVRAEGEVGGEHPRVATLLFLLSRIVQERGDYTEAEELCTRALSIYE 359
BLAST of mRNA_H-elongata_contig17533.4572.1 vs. uniprot
Match: A0A431L2N7_9BACT (Tetratricopeptide repeat protein n=1 Tax=Candidatus Melainabacteria bacterium TaxID=2052166 RepID=A0A431L2N7_9BACT) HSP 1 Score: 61.6 bits (148), Expect = 3.200e-7 Identity = 35/97 (36.08%), Postives = 52/97 (53.61%), Query Frame = 1
Query: 58 RAELELGPVHPTVAALLFLLSRVVQERGDYAEAEDLCARAVDVYEKTLGPEHPDVGMVLNCLALSWQAQARNLRLEEAEALHRLTLEIAQKANGSDH 348
RA + P +A+ L L S V+ + G AEA+ +C R + YE TL P H D+G++ N LA+ + A + E AE L++ LEI G+ H
Sbjct: 289 RATETFDQLDPRIASTLELYSEVLWKNGKLAEAQPVCERTLQFYESTLPPNHQDIGVIANNLAMLYHALEQP---ELAEPLYKRALEIRTANQGTTH 382
BLAST of mRNA_H-elongata_contig17533.4572.1 vs. uniprot
Match: D7FLX3_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLX3_ECTSI) HSP 1 Score: 54.7 bits (130), Expect = 6.870e-6 Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 1
Query: 286 EAEALHRLTLEIAQKANGSDHIASAYSLHGLAVLAQAKGDFD 411
EAE LH+ L+IA+ G H +AYSLHGLAVLAQA+G FD
Sbjct: 2 EAEPLHKRALDIARSTTGPGHPTAAYSLHGLAVLAQARGRFD 43
BLAST of mRNA_H-elongata_contig17533.4572.1 vs. uniprot
Match: A0A3S0FX92_9BACT (Tetratricopeptide repeat protein n=1 Tax=Candidatus Melainabacteria bacterium TaxID=2052166 RepID=A0A3S0FX92_9BACT) HSP 1 Score: 55.5 bits (132), Expect = 1.940e-5 Identity = 23/52 (44.23%), Postives = 36/52 (69.23%), Query Frame = 1
Query: 88 PTVAALLFLLSRVVQERGDYAEAEDLCARAVDVYEKTLGPEHPDVGMVLNCL 243
P + L L+ ++ ++G YA+AE LC R + +YE+T+GP HPDVG++ N L
Sbjct: 43 PRLTVTLECLAELLFKQGKYAQAEPLCERTLQIYERTIGPTHPDVGILANNL 94
BLAST of mRNA_H-elongata_contig17533.4572.1 vs. uniprot
Match: A0A838DUT1_9CHLR (Tetratricopeptide repeat protein n=1 Tax=Ktedonobacteraceae bacterium TaxID=2740538 RepID=A0A838DUT1_9CHLR) HSP 1 Score: 50.4 bits (119), Expect = 6.490e-5 Identity = 25/62 (40.32%), Postives = 36/62 (58.06%), Query Frame = 1
Query: 73 LGPVHPTVAALLFLLSRVVQERGDYAEAEDLCARAVDVYEKTLGPEHPDVGMVLNCLALSWQ 258
+GP HP A L L+ + +G+Y EA L RA+ +Y+K LGP+HP+ +V N L Q
Sbjct: 1 MGPEHPGTATSLNNLALLYSNQGNYEEALPLYQRALAIYKKVLGPDHPNTILVQNSYTLLQQ 62
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 80.1 |
| Seed ortholog evalue | 1.7e-12 |
| Seed eggNOG ortholog | 2880.D8LTR1 |
| KEGG ko | ko:K10407,ko:K19360 |
| KEGG Pathway | ko05132,map05132 |
| EggNOG free text desc. | intracellular distribution of mitochondria |
| EggNOG OGs | COG0457@1,KOG1839@1,KOG1839@2759,KOG1840@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko03019,ko03036,ko04812 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Tetratricopeptide-like helical domain |
| Ec32 ortholog | Ec-28_003150.1 |
| Exons | 6 |
| Model size | 780 |
| Cds size | 780 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930017.1702034-CDS-H-elongata_contig17533:82..179 | 1622930017.1702034-CDS-H-elongata_contig17533:82..179 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig17533 83..179 - |
| 1691679247.5219045-CDS-H-elongata_contig17533:82..179 | 1691679247.5219045-CDS-H-elongata_contig17533:82..179 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig17533 83..179 - |
| 1622930017.1907392-CDS-H-elongata_contig17533:619..723 | 1622930017.1907392-CDS-H-elongata_contig17533:619..723 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig17533 620..723 - |
| 1691679247.5329201-CDS-H-elongata_contig17533:619..723 | 1691679247.5329201-CDS-H-elongata_contig17533:619..723 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig17533 620..723 - |
| 1622930017.2141292-CDS-H-elongata_contig17533:1950..2010 | 1622930017.2141292-CDS-H-elongata_contig17533:1950..2010 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig17533 1951..2010 - |
| 1691679247.543708-CDS-H-elongata_contig17533:1950..2010 | 1691679247.543708-CDS-H-elongata_contig17533:1950..2010 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig17533 1951..2010 - |
| 1622930017.227447-CDS-H-elongata_contig17533:2578..2693 | 1622930017.227447-CDS-H-elongata_contig17533:2578..2693 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig17533 2579..2693 - |
| 1691679247.5546-CDS-H-elongata_contig17533:2578..2693 | 1691679247.5546-CDS-H-elongata_contig17533:2578..2693 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig17533 2579..2693 - |
| 1622930017.2426524-CDS-H-elongata_contig17533:3864..3990 | 1622930017.2426524-CDS-H-elongata_contig17533:3864..3990 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig17533 3865..3990 - |
| 1691679247.5658457-CDS-H-elongata_contig17533:3864..3990 | 1691679247.5658457-CDS-H-elongata_contig17533:3864..3990 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig17533 3865..3990 - |
| 1622930017.25665-CDS-H-elongata_contig17533:4532..4810 | 1622930017.25665-CDS-H-elongata_contig17533:4532..4810 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig17533 4533..4810 - |
| 1691679247.5756843-CDS-H-elongata_contig17533:4532..4810 | 1691679247.5756843-CDS-H-elongata_contig17533:4532..4810 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig17533 4533..4810 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17533.4572.1 >prot_H-elongata_contig17533.4572.1 ID=prot_H-elongata_contig17533.4572.1|Name=mRNA_H-elongata_contig17533.4572.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=260bp
ISAAEKRRHREQEVRKGLERAELELGPVHPTVAALLFLLSRVVQERGDYA EAEDLCARAVDVYEKTLGPEHPDVGMVLNCLALSWQAQARNLRLEEAEAL HRLTLEIAQKANGSDHIASAYSLHGLAVLAQAKGDFDEAESLFRQALAID EEAHGARHPEVASRLNSLAALLQTRGRYDEAEAIFTRALEVDEACFGLEH PRVAAGLHNLAALLQAQGKHAEADRLQTRALETWEREYGPEHPKLAAFLN NQATLRLAQG back to topmRNA from alignment at H-elongata_contig17533:83..4810- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig17533.4572.1 ID=mRNA_H-elongata_contig17533.4572.1|Name=mRNA_H-elongata_contig17533.4572.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4728bp|location=Sequence derived from alignment at H-elongata_contig17533:83..4810- (Himanthalia elongata Himel1 dioecious) ATCTCCGCCGCCGAGAAGCGACGGCACAGAGAGCAGGAGGTACGCAAGGG
GCTGGAAAGGGCCGAGTTGGAGCTGGGCCCCGTTCATCCGACGGTCGCTG
CGCTTCTGTTTTTGCTGTCAAGGGTGGTTCAGGAGAGGGGAGACTACGCG
GAGGCAGAAGACCTCTGTGCGAGGGCAGTAGACGTGTACGAGAAGACGCT
GGGACCGGAGCACCCGGATGTCGGAATGGTACTGAATTGTCTGGCGTTAT
CGTGGCAGGCGCAGGCGAGAAATTTGCGGTTGCGTTATCGTGACACCGGT
GATGACGGCGTTGTCGCGATCAGGAATGCTGTGTGTGTATTGATTAAATT
GTAGGGAACAGGGAAAAAATATTTTCCCTTTTTATCAATTTTGCATTAAA
CCGCGCAAACCGGCATGACACGTAAGGGGGCGCCACTCCGGTTTGCAAAT
ACCCCCCCCCTTATGGGGAGCTACCCTGTTCAGCTGACCACGAGCAAAAG
GAAACCAACTCCGGTTGATCCTTCTGCTGAAAGTGAGACCATGCATACAT
ACAGTACATACATAACCGCGCAAGTGTGCGTATGTATCTATATCTGCGTA
CTGTATGTAAATGTAAAATGTGCGTTTTGGCCGGATTCGGACGTATTGCC
CAGCGATCTCGAGATATATATATATATATTAAAGAGTAAAACCGTAGTCC
CTCGCTACTAATAATATTTCTAGTTTTGCGGGGTTTTATTTATCTGTGAT
CCGCATTATTCAATACCGCTTGCAATGTTTGCCGCACGGTATGTATGCGT
GGAACCCAATGACAGGGGAGGCTGGAGGAGGCGGAAGCGCTTCATCGACT
GACCCTCGAGATCGCGCAGAAGGCAAACGGGTCGGATCACATTGCGTCGG
CGTATTCGCTCCACGGCCTGGCCGTGCTCGCTCAAGCGAAAGGCGAGTGT
GTGTGTAAGGGGGTGGGGGAAGGGGGGCGTTGCGGCCATCGAAAGTGGAA
CGAATGAAGATAAACCATGCACCGTACAGCAGTCGTCGTTTCATCTCGAT
ATGGATGTCATGAGTGCTTCCGTCTAGCTCCTACCAAATACTATGGTATT
ATGCTTAGCGGAAGGAGGGAGGGGGGGGAGGAGCGGGGGACGACTTTGCT
ACTTTAAAAATATTTACGGAATACGATTTTGGGCGCAAATTCCCGTGTTG
AAAAGACCCCGACCCAACCCAACGATAACGCTCTTACATATATAAACCCA
AACCATGTAGCGAAGTGTATGGCATGCATTGTGAACCAACGGAAAATCAT
TTTTCGGCAATGTCGTAAAGCGTCTACTGGCTTGGGGCGAGGGATGGACA
GCCCCCGCGGGAAAAAAATAATTGTCAGCGACAGGAGGCGCACGGTTTGA
ACATACGCCTTTTTCGTGATTTCGATGCAGTTTTGATGTTATTAAAAAAA
ACACACACACACACACACACACACAGATGTCCACTAGATAGAACGGCGGG
TTTTGCCATGAACATCCTTTAACCGTGCATCTAGACGTTGTGTGTGCTGT
CCCGTATGCTTCTCGCTGCCGATACCGTGTTGTACGGTATTTTAATGTAC
TGTGCCGTATTGTAATGTACTGTACAGTATTGCTGAACAGTATTGTAATG
TAAATGTACCGTATTGTAAGGTACTGCACCGTATTGCTGAACAGTATTGT
AATGTAAATGTACCGTAATGTACGGTATTGTAATGTACTCGTAACTAGAG
CGTATTGTAATGTACTGTACCGTACTGCTAAGCAGTATTGTAATATACTC
GTAACTAGAGCGTATTGTAATGTAAATGTACCGTAATGTACGGTATTGTA
ATATACCGTACGGTACTGCTGTACCGTATTGTAATGTAACTATAGCGTGT
TGTAATGTACTGTACCATATTATAATATAACTGTACATTATTGTAATATA
CTACCGTACGGTACTTTACCGTATTTGACTGAAATGTACCGTACCGTTTT
GGAATGTACCGTACCGTTTTGTAATGTACCATACCGTGCTGTACCGCAGT
CTGTATTCTGTGCAAGCCGCTATGAGTAATGGGTGCCTACGTATACACCG
TCGTACTCTCCAGGGAGTTTCGACGAGGCGGAGTCCTTGTTCCGACAGGC
ACTGGCCATCGATGAGGAGGCCCACGGAGCTCGACACCCAGAGGTTGCTT
CTCGCCTCAACAGCTTGGCAGCCCTTCTGCAGGTAACACTCGCTTCGAAG
AAGCCCTCGCGATTAGTTCGGGTGGCGTTTTCGTCATCTCTTCTTATTTC
GGCTTTCGGCTAATGACGTCATCCGCTTGGATTCTCGTGGTTATCACTCA
GAGAGTCGCGTCGAGGCTTGGGTCGAAAAACCCGTCTCGAGGACGTTTCC
CTGCCTTACCACGCCACCGCTATGGAGAATAAAAGTGTGTGCACATCGTG
ATTATTGAGGAGAACGCCCCCGCTCCCCCTCCCCCGGGGACATATTTCAC
TCTTCCCCTTATTTTTCATCTCTAGCGACGTGATGTACCTACCAACATCA
AGTAATGCGGAGTTGGAGGCACCTCGCCCAAAATGTGTTAAAATTACCTT
TTTTACCCGTGCCAGTAAGTACCCTCTGCATTGTGGCGAGGCTGTGTTAA
AAAGGTACCTTTCCCCCGCCCCAGTAGCCCTCTGCATTGCGACGCGAAAG
GGAGAAGAGGAATGCATTACCTGCTAGGTTTCGTGACAGTTCGTTTACTC
GGATCTTGCTTGGCGTGTTTCGCAACCCCCCTCTCGTATGGCCACACAAG
ACTCGTGGGAGGTATGACGAAGCAGAGGCTATCTTCACCAGGGCGCTGGA
GGTCGACGAGGTGCGTGCGCGCGCGACGCTTGGTACTGTTTTTTCCGCGA
TGGTAAAAAATATATATCAGCATTGCAAAGAATTGCTTGATGACGTCACT
CTCGCTGTTGGACGTGATTGAGTGCAGGGGGTCATGCTACCGTACGTGAT
TGGGATTCCGTCGCGATTGTAGATATATCTCTCTTATATTTCCGGAGTGT
CCCCAGAGCGAGACCGATGATTGCGTGACATTGCGTGACCCGTAAACCTT
GACGAGGTCGCCTCTTCGCCGAAGCCCAAAAAAGGATATTCAGCATCGTT
TTTCTTAAATTCAAGGGTGGACGCTCGGGTTTTAAGAGTGAAGTTCTGGA
TTTGGTCGTGTTGAGGCTTGTGAGGTGGCTCAAAAAAAAAATGGGATCTT
GCTCGTGTCAACACCCCGATCGCCTTCGTTGATGTACAGTAGCGGCGAGT
GGCCACAAGCAGTGGGGTGATATTTCCCGCTGTAGAGGTGCCTTCGCTTC
CCCCCCAAACAATCCTTCCAATGATGGCCTGAAATCTTTTCAGGCCATCG
ATGGAGTTTTCTCCGAAATCTTGCAACCTCCATGAGATTCGATGACATTT
TATTATATTCGATAGCATTCGATGAAGCGGGTCGGGTGGAGATGCGAATG
ATGTCCTAGGCGATCGTGTGGACAGGAGCTTTGATTGATGATTGATTGGA
GCGCTTGTAGAGCCGGAACGAGACGGCATTTCCGGAAATGTTGCATGCCG
CCAAGGAGGTTTGGCGGTTACTCGGGCTCCTCGCTCTAAAACAAGCATTA
ATTGTCAACCACGAGGCCTTGTGTCAGCAGCGATCGCGGCTACCTCTTGC
GATACAGTATATATAGATTGCCTATAATTTCTCCCGATACGAAGAACACT
TACACCAACACACCTTGGATGGCGGGGGAGGGGGCGGGGGGGTCAGGGAG
TTGGAGTTGGAGATCGGCCGTGCTCTGGGTGATATATATCTAGCCCGTGC
ACCATCCTCTTTGCTCTTTGCCAAGTAAGGATCGACCATTTCCTAGGGTA
GGATACGCGGCTGCGGGGTCCGATGATGCAGTTGGGACGACATATTTATC
TAGGCACCGGGTGCACAGGCTGGCTTCCTCGTTTCCGGTGCTTTTATCAT
TTCTCTTTTTTCCAGGAGTGGGGTAATGGGGTAATAATAATGTTGAAGAA
TCACATTTTGTCTCGTGCGCCAACCCCCTGTGCGCAGGCCTGCTTCGGTT
TGGAGCACCCTCGCGTGGCGGCTGGCCTTCACAACCTGGCGGCATTGCTT
CAGGCTCAGGGCAAGCACGCGGAGGCCGACAGGCTGCAAACGTGAGAGAG
GGTCACGATGTGTGAGGTCGACGGTTGTTTAATCCGCGCGCGCTTGTTTG
TGTTGGCTCTTTGCGCTTGCCGTTGCCGAATACACATATCTAAAGCATAT
AGCCGTAGAAAAATAAGGGTACTTGGTTGGAGATGAGGGCGGGTGCTAGG
TGCTGTGGGCCGCAGGGTACTTAAATAATTATCTCTAGAAACCCTTGTAT
AAAAGGGTGTATGACAGTACAGTAGATGGATGTTTGGGTCGTTCTCAAGC
CACGTTGGCGATGGGATCGGGCCATCATTAGGCAAGCGATCGAAATTGGC
TGCAGGATATCTAACCGTTTGAAGCAGTATCGTCTAGCGCGGAAGCATCG
CTAGCGTGGCGAGAGGAGTGTCCCTATCTTGGTGCGATAGCTTCCGGCTG
CCGTGGTGCGCCAAACGATATGCTCGCGCAGGCGTGCCCTGGAGACTTGG
GAGCGGGAGTACGGTCCGGAGCACCCGAAGCTAGCGGCGTTCCTGAATAA
TCAGGCAACTCTACGCCTAGCACAAGGT back to topCoding sequence (CDS) from alignment at H-elongata_contig17533:83..4810- >mRNA_H-elongata_contig17533.4572.1 ID=mRNA_H-elongata_contig17533.4572.1|Name=mRNA_H-elongata_contig17533.4572.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1560bp|location=Sequence derived from alignment at H-elongata_contig17533:83..4810- (Himanthalia elongata Himel1 dioecious) ATCTCCGCCGCCGAGAAGCGACGGCACAGAGAGCAGGAGGTACGCAAGGG GCTGGAAAGGGCCGAGTTGGAGCTGGGCCCCGTTCATCCGACGGTCGCTG CGCTTCTGTTTTTGCTGTCAAGGGTGGTTCAGGAGAGGGGAGACTACGCG GAGGCAGAAGACCTCTGTGCGAGGGCAGTAGACGTGTACGAGAAGACGCT GGGACCGGAGCACCCGGATGTCGGAATGGTACTGAATTGTCTGGCGTTAT CGTGGCAGGCGCAGGCGAGAAATTTGCGATCTCCGCCGCCGAGAAGCGAC GGCACAGAGAGCAGGAGGTACGCAAGGGGCTGGAAAGGGCCGAGTTGGAG CTGGGCCCCGTTCATCCGACGGTCGCTGCGCTTCTGTTTTTGCTGTCAAG GGTGGTTCAGGAGAGGGGAGACTACGCGGAGGCAGAAGACCTCTGTGCGA GGGCAGTAGACGTGTACGAGAAGACGCTGGGACCGGAGCACCCGGATGTC GGAATGGTACTGAATTGTCTGGCGTTATCGTGGCAGGCGCAGGCGAGAAA TTTGCGGCTGGAGGAGGCGGAAGCGCTTCATCGACTGACCCTCGAGATCG CGCAGAAGGCAAACGGGTCGGATCACATTGCGTCGGCGTATTCGCTCCAC GGCCTGGCCGTGCTCGCTCAAGCGAAAGGCGAGCTGGAGGAGGCGGAAGC GCTTCATCGACTGACCCTCGAGATCGCGCAGAAGGCAAACGGGTCGGATC ACATTGCGTCGGCGTATTCGCTCCACGGCCTGGCCGTGCTCGCTCAAGCG AAAGGCGATTTCGACGAGGCGGAGTCCTTGTTCCGACAGGCACTGGCCAT CGATGAGGAGGCCCACGGAGCTCGACACCCAGAGGTTGCTTCTCGCCTCA ACAGCTTGGCAGCCCTTCTGCAGTTTCGACGAGGCGGAGTCCTTGTTCCG ACAGGCACTGGCCATCGATGAGGAGGCCCACGGAGCTCGACACCCAGAGG TTGCTTCTCGCCTCAACAGCTTGGCAGCCCTTCTGCAGACTCGTGGGAGG TATGACGAAGCAGAGGCTATCTTCACCAGGGCGCTGGAGGTCGACGAGAC TCGTGGGAGGTATGACGAAGCAGAGGCTATCTTCACCAGGGCGCTGGAGG TCGACGAGGCCTGCTTCGGTTTGGAGCACCCTCGCGTGGCGGCTGGCCTT CACAACCTGGCGGCATTGCTTCAGGCTCAGGGCAAGCACGCGGAGGCCGA CAGGCTGCAAACGCCTGCTTCGGTTTGGAGCACCCTCGCGTGGCGGCTGG CCTTCACAACCTGGCGGCATTGCTTCAGGCTCAGGGCAAGCACGCGGAGG CCGACAGGCTGCAAACGCGTGCCCTGGAGACTTGGGAGCGGGAGTACGGT CCGGAGCACCCGAAGCTAGCGGCGTTCCTGAATAATCAGGCAACTCTACG CCTAGCACAAGGTGCGTGCCCTGGAGACTTGGGAGCGGGAGTACGGTCCG GAGCACCCGAAGCTAGCGGCGTTCCTGAATAATCAGGCAACTCTACGCCT AGCACAAGGT back to top
|