mRNA_H-elongata_contig175324.4571.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig175324.4571.1
Unique NamemRNA_H-elongata_contig175324.4571.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig175324.4571.1 vs. uniprot
Match: D8LST7_ECTSI (Putative type II topoisomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LST7_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.730e-23
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:    1 AAVAPSSTLRHCDGLDVVRKGSRGRGRQLMILPGMLGLGKSAVGGKLGTLKEVTSASPVLYIEFPDVR-GCT 213
            AA+APSSTLR CDGL+VV+  +RGRGRQLM+LPG LGLG  + GGKLGTL   T A+PVLY+EFP+ R  CT
Sbjct:   67 AAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNATPANPVLYMEFPEGRLKCT 138
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BLAST of mRNA_H-elongata_contig175324.4571.1 vs. uniprot
Match: A0A6H5JPN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN3_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.420e-23
Identity = 48/72 (66.67%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:    1 AAVAPSSTLRHCDGLDVVRKGSRGRGRQLMILPGMLGLGKSAVGGKLGTLKEVTSASPVLYIEFPDVR-GCT 213
            AA+APSSTLR CDGL+VV+  +RGRGRQLM+LPG+LGLG  + GGKLGTL     A+PVLY+EFP+ R  CT
Sbjct:   78 AAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGVLGLGNGSTGGKLGTLNNAAPANPVLYVEFPEGRLKCT 149
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BLAST of mRNA_H-elongata_contig175324.4571.1 vs. uniprot
Match: A0A7S3Z848_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z848_9EUKA)

HSP 1 Score: 52.8 bits (125), Expect = 6.680e-7
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:   13 PSSTLRHCDGLDVVRKG-SRGRGRQLMILPGMLGLGKSAVGGKLGTLKEVTSASPVLYIEFPDVR 204
            P + L++ DG ++  K  SRGR R L +LPG L +  +  GGK GTL  V S +PVLY+E+P  R
Sbjct:   24 PKALLKY-DGANINNKSASRGRSRFLFVLPGKLDVQNT--GGKFGTLSNVMSQNPVLYVEYPQGR 85
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BLAST of mRNA_H-elongata_contig175324.4571.1 vs. uniprot
Match: A0A7S0S0U2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S0U2_9CHLO)

HSP 1 Score: 50.8 bits (120), Expect = 5.080e-6
Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   16 SSTLRHCDGLDVVRKGSRGRGRQLMILPGMLGLGKSAVGGKLGTLKEVTSASPVLYIEFPDVR 204
            S  L   +G+D++++GS  + R L+I+  +L     A  GKLGTL ++ S SPV+Y++FP  R
Sbjct:   40 SKGLIKANGMDIIKRGSNRKNRYLIIMNCLLA---PAAAGKLGTLAQLDSKSPVMYMDFPQGR 99
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BLAST of mRNA_H-elongata_contig175324.4571.1 vs. uniprot
Match: A0A4D9D0I6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0I6_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 6.200e-6
Identity = 29/72 (40.28%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:    1 AAVAPSST----LRHCDGLDVVRKGSRGRGRQLMILPGMLGLGKSAVGGKLGTLKEVTSASPVLYIEFPDVR 204
            A + PSS     LR  DG D+VRKG++ + R + ILP ++ +  +  GGKLGT+ ++ + +PVLY++F   R
Sbjct:   42 AKLVPSSIRVKDLRRWDGCDIVRKGAK-KTRYVFILPAIMTI--TQAGGKLGTIAQMDTETPVLYLDFTQGR 110
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BLAST of mRNA_H-elongata_contig175324.4571.1 vs. uniprot
Match: A0A250XN82_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XN82_9CHLO)

HSP 1 Score: 51.6 bits (122), Expect = 8.500e-6
Identity = 24/63 (38.10%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:   16 SSTLRHCDGLDVVRKGSRGRGRQLMILPGMLGLGKSAVGGKLGTLKEVTSASPVLYIEFPDVR 204
            S  L  C+G D+V+K S  + R L+++   L     A  G++GTL  + S +PV+Y+EFP  R
Sbjct:   52 SKALTKCNGYDIVKKSSARKSRYLVVINAQLA---PAAAGRMGTLSNLDSKNPVMYLEFPQGR 111
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig175324.4571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LST7_ECTSI1.730e-2368.06Putative type II topoisomerase n=1 Tax=Ectocarpus ... [more]
A0A6H5JPN3_9PHAE2.420e-2366.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3Z848_9EUKA6.680e-746.15Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A7S0S0U2_9CHLO5.080e-639.68Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A4D9D0I6_9STRA6.200e-640.28Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A250XN82_9CHLO8.500e-638.10Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig175324contigH-elongata_contig175324:756..983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930017.1203475-CDS-H-elongata_contig175324:755..9831622930017.1203475-CDS-H-elongata_contig175324:755..983Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175324 756..983 +
1691679247.5122745-CDS-H-elongata_contig175324:755..9831691679247.5122745-CDS-H-elongata_contig175324:755..983Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175324 756..983 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig175324.4571.1prot_H-elongata_contig175324.4571.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig175324 756..983 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig175324.4571.1

>prot_H-elongata_contig175324.4571.1 ID=prot_H-elongata_contig175324.4571.1|Name=mRNA_H-elongata_contig175324.4571.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
AAVAPSSTLRHCDGLDVVRKGSRGRGRQLMILPGMLGLGKSAVGGKLGTL
KEVTSASPVLYIEFPDVRGCTLVCS*
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mRNA from alignment at H-elongata_contig175324:756..983+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig175324.4571.1 ID=mRNA_H-elongata_contig175324.4571.1|Name=mRNA_H-elongata_contig175324.4571.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=228bp|location=Sequence derived from alignment at H-elongata_contig175324:756..983+ (Himanthalia elongata Himel1 dioecious)
GCGGCGGTGGCGCCCTCATCCACATTACGACACTGCGATGGGCTCGATGT
CGTCAGGAAGGGATCACGGGGCCGCGGACGGCAGTTAATGATATTGCCTG
GTATGCTCGGACTGGGCAAAAGCGCAGTTGGCGGCAAGCTTGGGACGCTG
AAGGAGGTCACCTCGGCCTCCCCCGTCCTCTACATCGAATTTCCTGATGT
ACGTGGTTGCACTCTTGTGTGCTCTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig175324:756..983+

>mRNA_H-elongata_contig175324.4571.1 ID=mRNA_H-elongata_contig175324.4571.1|Name=mRNA_H-elongata_contig175324.4571.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig175324:756..983+ (Himanthalia elongata Himel1 dioecious)
GCGGCGGTGGCGCCCTCATCCACATTACGACACTGCGATGGGCTCGATGT
CGTCAGGAAGGGATCACGGGGCCGCGGACGGCAGTTAATGATATTGCCTG
GTATGCTCGGACTGGGCAAAAGCGCAGTTGGCGGCAAGCTTGGGACGCTG
AAGGAGGTCACCTCGGCCTCCCCCGTCCTCTACATCGAATTTCCTGATGT
ACGTGGTTGCACTCTTGTGTGCTCTTAAGCGGCGGTGGCGCCCTCATCCA
CATTACGACACTGCGATGGGCTCGATGTCGTCAGGAAGGGATCACGGGGC
CGCGGACGGCAGTTAATGATATTGCCTGGTATGCTCGGACTGGGCAAAAG
CGCAGTTGGCGGCAAGCTTGGGACGCTGAAGGAGGTCACCTCGGCCTCCC
CCGTCCTCTACATCGAATTTCCTGATGTACGTGGTTGCACTCTTGTGTGC
TCTTAA
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