mRNA_H-elongata_contig17532.4570.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17532.4570.1
Unique NamemRNA_H-elongata_contig17532.4570.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig17532.4570.1 vs. uniprot
Match: A0A6H5LEZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEZ0_9PHAE)

HSP 1 Score: 637 bits (1642), Expect = 8.430e-217
Identity = 322/343 (93.88%), Postives = 326/343 (95.04%), Query Frame = 1 
Query:    1 QASARQRAGRAGRTGPGKCYRLYTESAYKQEMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPIQTMVSAMENLYALGALDEEG-----------FPLEPQLSKMLIIRHEITSVELGCAEEILTIVAMLSVENPFYRPKEKQAQADMKKAKFFQPEGDHLTLLAVYEAWKASKFSNPWCYENFVQARSMRRSQDVRKQLVSIMDRYKMEILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFYRAADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRKG 996
            QASARQRAGRAGRTGPGKCYRLYTESAYKQEMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPP+QTMVSAMENLYALGALDEEG           FPLEPQLSKMLI     TSVELGCAEEILTIVAMLSVENPFYRPKEKQAQADMKKAKFFQPEGDHLTLLAVYEAWK SKFSNPWCYENFVQARSMRRSQDVRKQLVSIMDRYKM+ILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFY++ADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRKG
Sbjct:  963 QASARQRAGRAGRTGPGKCYRLYTESAYKQEMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPLQTMVSAMENLYALGALDEEGLLTRLGRKMAEFPLEPQLSKMLI-----TSVELGCAEEILTIVAMLSVENPFYRPKEKQAQADMKKAKFFQPEGDHLTLLAVYEAWKTSKFSNPWCYENFVQARSMRRSQDVRKQLVSIMDRYKMDILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFYKSADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRKG 1300
[Close]
BLAST of mRNA_H-elongata_contig17532.4570.1 vs. uniprot
Match: A0A835YV72_9STRA (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV72_9STRA)

HSP 1 Score: 615 bits (1586), Expect = 3.960e-208
Identity = 308/343 (89.80%), Postives = 322/343 (93.88%), Query Frame = 1 
Query:    1 QASARQRAGRAGRTGPGKCYRLYTESAYKQEMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPIQTMVSAMENLYALGALDEEG-----------FPLEPQLSKMLIIRHEITSVELGCAEEILTIVAMLSVENPFYRPKEKQAQADMKKAKFFQPEGDHLTLLAVYEAWKASKFSNPWCYENFVQARSMRRSQDVRKQLVSIMDRYKMEILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFYRAADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRKG 996
            QASARQRAGRAGRTGPGKCYRLYTE AYK EML SS+PEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPI T+VSAME+LYALGALDEEG           FPLEPQLSKMLII     SVELGCAEEILTIV+MLSVENPFYRPKEKQAQADMKKAKFFQPEGDHLTLLAVYEAWKA+KFSNPWCYENF+QARSMRR+QDVRKQLVSIMDRYKM+I++AGRNYNKVRRAIVSGYFTHAAKKDP+EGY TMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRN+MTIEPKWLVELAPQFY+AADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKR+G
Sbjct:  991 QASARQRAGRAGRTGPGKCYRLYTEVAYKSEMLPSSIPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPIGTLVSAMESLYALGALDEEGLLTRLGRKMAEFPLEPQLSKMLII-----SVELGCAEEILTIVSMLSVENPFYRPKEKQAQADMKKAKFFQPEGDHLTLLAVYEAWKANKFSNPWCYENFIQARSMRRAQDVRKQLVSIMDRYKMDIVSAGRNYNKVRRAIVSGYFTHAAKKDPKEGYMTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNVMTIEPKWLVELAPQFYQAADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRRG 1328
[Close]
BLAST of mRNA_H-elongata_contig17532.4570.1 vs. uniprot
Match: A0A7R9UAC0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAC0_9STRA)

HSP 1 Score: 558 bits (1437), Expect = 3.700e-192
Identity = 273/343 (79.59%), Postives = 307/343 (89.50%), Query Frame = 1 
Query:    1 QASARQRAGRAGRTGPGKCYRLYTESAYKQEMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPIQTMVSAMENLYALGALDEEG-----------FPLEPQLSKMLIIRHEITSVELGCAEEILTIVAMLSVENPFYRPKEKQAQADMKKAKFFQPEGDHLTLLAVYEAWKASKFSNPWCYENFVQARSMRRSQDVRKQLVSIMDRYKMEILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFYRAADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRKG 996
            QASARQRAGRAGRTGPGKCYRLYTE AY+ EML SSVPEIQRT+LGNVVLQLKAMGI DL+GFDFMDPPP+QT++ AMENL+ALGALDEEG           FPLEPQLSKMLI     TSV+  C+EEILTI++MLSVE+PFYRPK+KQ QAD KKAKF QPEGDHLTLLAVY+AW  S FSNPWCYENF+QAR+MRR+QD+RKQLV IMD YKM+IL+AGRNY K++RAIV+GYFT+AAKKDPQEGYRTMVEGN VYIHPSSALFNKSPEWVLYHE+VLTTKEYMRNIM+IEPKWLVELAP FYR ADP K+TRQKRM++IEPL+DR+NPP+SWRLS+R+G
Sbjct:  459 QASARQRAGRAGRTGPGKCYRLYTEIAYRTEMLPSSVPEIQRTSLGNVVLQLKAMGIKDLVGFDFMDPPPMQTLIGAMENLFALGALDEEGLLTRLGRRMAEFPLEPQLSKMLI-----TSVQFRCSEEILTIISMLSVESPFYRPKDKQGQADSKKAKFHQPEGDHLTLLAVYDAWAKSNFSNPWCYENFIQARAMRRAQDIRKQLVPIMDNYKMDILSAGRNYQKIQRAIVAGYFTNAAKKDPQEGYRTMVEGNVVYIHPSSALFNKSPEWVLYHEVVLTTKEYMRNIMSIEPKWLVELAPNFYRKADPTKLTRQKRMERIEPLFDRYNPPDSWRLSRRRG 796
[Close]
BLAST of mRNA_H-elongata_contig17532.4570.1 vs. uniprot
Match: A0A7S2MKF0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MKF0_9STRA)

HSP 1 Score: 565 bits (1457), Expect = 6.060e-191
Identity = 274/343 (79.88%), Postives = 309/343 (90.09%), Query Frame = 1 
Query:    1 QASARQRAGRAGRTGPGKCYRLYTESAYKQEMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPIQTMVSAMENLYALGALDEEG-----------FPLEPQLSKMLIIRHEITSVELGCAEEILTIVAMLSVENPFYRPKEKQAQADMKKAKFFQPEGDHLTLLAVYEAWKASKFSNPWCYENFVQARSMRRSQDVRKQLVSIMDRYKMEILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFYRAADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRKG 996
            QAS RQRAGRAGRTGPGKCYRLYTE A++ EML SS+PEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPP+QTMV AME+L++LGALD+EG           FPLEPQLSKMLI+     SV+L C EEILTIVAMLSVENPFYRPK+KQAQADMKKAKFFQPEGDHLTLLAV+E WK +KFSNPWCYEN++QAR+MRR+QDVRKQL SI+DRYKM+I++AGRNY KV+R+I +GYFT+AAKKDPQEGYRTMVEGNPVYIHPSSALFNK+PEW++YHELV+TTKEYMR +M IEPKWLVELAPQF+RAADP +MT+ KRM KIEPLYDRFNPPN WRLS+R+G
Sbjct:  801 QASCRQRAGRAGRTGPGKCYRLYTEQAFRTEMLPSSIPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPVQTMVGAMESLFSLGALDDEGLLTRLGRKMAEFPLEPQLSKMLIV-----SVDLACTEEILTIVAMLSVENPFYRPKDKQAQADMKKAKFFQPEGDHLTLLAVWEGWKIAKFSNPWCYENYLQARAMRRAQDVRKQLTSILDRYKMDIVSAGRNYKKVQRSITAGYFTNAAKKDPQEGYRTMVEGNPVYIHPSSALFNKNPEWLIYHELVMTTKEYMRAVMAIEPKWLVELAPQFFRAADPTRMTKAKRMMKIEPLYDRFNPPNMWRLSRRRG 1138
[Close]
BLAST of mRNA_H-elongata_contig17532.4570.1 vs. uniprot
Match: I2CR50_NANGC (ATP-dependent RNA helicase DHX8/PRP22 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR50_NANGC)

HSP 1 Score: 552 bits (1423), Expect = 5.470e-188
Identity = 268/343 (78.13%), Postives = 307/343 (89.50%), Query Frame = 1 
Query:    1 QASARQRAGRAGRTGPGKCYRLYTESAYKQEMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPIQTMVSAMENLYALGALDEEG-----------FPLEPQLSKMLIIRHEITSVELGCAEEILTIVAMLSVENPFYRPKEKQAQADMKKAKFFQPEGDHLTLLAVYEAWKASKFSNPWCYENFVQARSMRRSQDVRKQLVSIMDRYKMEILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFYRAADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRKG 996
            QASA+QR+GRAGRT PGKCYRLYTE A+  EML +SVPEIQR NLGNVVLQLKAMGINDLLGFDFMDPPP+ T++SAM+NLY LGALDEEG           FPLEPQLSK+LI     TSVELGC +EILTIVAMLSVE PFYRPKEKQAQADMKKAKFFQ EGDHLTLLAVYE WK +KFSNPWC+ENF+QAR+M+R+QDVRKQLV+I+DRYKM+IL+AGRNY K+++AI SGYFTH AKKDPQEG++T+V+ N VYIHPSSALFNKSPEWVLYHELV+TTKEYMRN+M ++PKWLV+LAP+F++AADP+K+T+ KRMQKIEPLYDRFNPPNSWRLS+RKG
Sbjct:  619 QASAQQRSGRAGRTMPGKCYRLYTEDAFHNEMLPNSVPEIQRANLGNVVLQLKAMGINDLLGFDFMDPPPVATLISAMQNLYTLGALDEEGLLTRLGRKMAEFPLEPQLSKILI-----TSVELGCTDEILTIVAMLSVETPFYRPKEKQAQADMKKAKFFQVEGDHLTLLAVYEGWKNAKFSNPWCFENFLQARAMKRAQDVRKQLVAILDRYKMDILSAGRNYKKIQQAICSGYFTHVAKKDPQEGFKTIVDNNLVYIHPSSALFNKSPEWVLYHELVMTTKEYMRNVMAVDPKWLVQLAPKFFKAADPHKLTKAKRMQKIEPLYDRFNPPNSWRLSRRKG 956
[Close]
BLAST of mRNA_H-elongata_contig17532.4570.1 vs. uniprot
Match: B7FYK9_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYK9_PHATC)

HSP 1 Score: 530 bits (1365), Expect = 1.200e-186
Identity = 258/343 (75.22%), Postives = 305/343 (88.92%), Query Frame = 1 
Query:    1 QASARQRAGRAGRTGPGKCYRLYTESAYKQEMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPIQTMVSAMENLYALGALDEEG-----------FPLEPQLSKMLIIRHEITSVELGCAEEILTIVAMLSVENPFYRPKEKQAQADMKKAKFFQPEGDHLTLLAVYEAWKASKFSNPWCYENFVQARSMRRSQDVRKQLVSIMDRYKMEILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFYRAADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRKG 996
            QASARQRAGRAGRTGPGKCYRLYTE+A+K EML +++PEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPP+ T+V A+E+L+ALGALDEEG           FPLEP LSKMLI+     SV+LGC+EEILTI AMLSVENPFYRP++KQAQ+DMKKAKF Q EGDHLTLLAVY+AW+ASKFSNPWC+ENFVQARSMRR+QDVRKQLV+IMDRY++ +++AG+NY  + +AI +G+FT+AAKKDPQEGYRT+V+ NPVYIHPSSA+FNK+PE+V+YHELVLTTKEYMRNI+ I+ KWL ELAP FY+ ADPN++T+ KR +KIEPL+DRFNP +SWRLSKRKG
Sbjct:   85 QASARQRAGRAGRTGPGKCYRLYTENAFKTEMLPTNIPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPVATLVGALESLHALGALDEEGLLTRLGRKMAEFPLEPNLSKMLIL-----SVDLGCSEEILTITAMLSVENPFYRPRDKQAQSDMKKAKFHQAEGDHLTLLAVYKAWEASKFSNPWCFENFVQARSMRRAQDVRKQLVTIMDRYRLLLISAGKNYKIICKAITAGFFTNAAKKDPQEGYRTLVDQNPVYIHPSSAVFNKNPEYVIYHELVLTTKEYMRNILVIDAKWLYELAPSFYKQADPNRITKTKRKEKIEPLHDRFNPKDSWRLSKRKG 422
[Close]
BLAST of mRNA_H-elongata_contig17532.4570.1 vs. uniprot
Match: A0A7S2S7U2_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S7U2_9STRA)

HSP 1 Score: 523 bits (1346), Expect = 1.870e-184
Identity = 253/343 (73.76%), Postives = 302/343 (88.05%), Query Frame = 1 
Query:    1 QASARQRAGRAGRTGPGKCYRLYTESAYKQEMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPIQTMVSAMENLYALGALDEEG-----------FPLEPQLSKMLIIRHEITSVELGCAEEILTIVAMLSVENPFYRPKEKQAQADMKKAKFFQPEGDHLTLLAVYEAWKASKFSNPWCYENFVQARSMRRSQDVRKQLVSIMDRYKMEILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFYRAADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRKG 996
            QASARQRAGRAGRTGPGKC+RL+TE AYK EML +++PEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPP+ T+V AME+L+ALG+LD+EG           FPLEP LSKML++     SV+LGC++EILTI ++LSVENPFYRPK+KQAQADMKKAKF Q EGDHLTLL VY+ W+A+KFSNPWC+ENF+QARSM+R+QDVRKQLV+IMDRYK++IL+AG+NY  + +AI +G+F +AAKKD QEGYRT+V+ NPVYIHPSS+++NKSPE+V+YHELVLTTKEYMRNIM I+ KWL ELAP FYR ADPNK+T+ KRMQKIEPL+DRFNP +SWRLS+RKG
Sbjct:   40 QASARQRAGRAGRTGPGKCFRLFTELAYKNEMLPTNIPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPVATLVGAMESLHALGSLDDEGLLTRLGRKMAEFPLEPNLSKMLLL-----SVDLGCSDEILTITSLLSVENPFYRPKDKQAQADMKKAKFHQAEGDHLTLLTVYKGWEAAKFSNPWCFENFIQARSMKRAQDVRKQLVTIMDRYKLDILSAGKNYQIICKAITAGFFPNAAKKDAQEGYRTLVDQNPVYIHPSSSVYNKSPEFVIYHELVLTTKEYMRNIMAIDAKWLTELAPAFYRQADPNKLTKAKRMQKIEPLHDRFNPADSWRLSRRKG 377
[Close]
BLAST of mRNA_H-elongata_contig17532.4570.1 vs. uniprot
Match: K3WHT1_GLOUD (RNA helicase n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WHT1_GLOUD)

HSP 1 Score: 541 bits (1395), Expect = 6.880e-184
Identity = 263/343 (76.68%), Postives = 304/343 (88.63%), Query Frame = 1 
Query:    1 QASARQRAGRAGRTGPGKCYRLYTESAYKQEMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPIQTMVSAMENLYALGALDEEG-----------FPLEPQLSKMLIIRHEITSVELGCAEEILTIVAMLSVENPFYRPKEKQAQADMKKAKFFQPEGDHLTLLAVYEAWKASKFSNPWCYENFVQARSMRRSQDVRKQLVSIMDRYKMEILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFYRAADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRKG 996
            QASARQRAGRAGRTGPGKCYRLYTE+AYK EML ++VPEIQR NLG+VVLQLKAMGINDL+GFDFMDPPP Q +V A+ENLY LGALD+EG           FP+EP+ +K+L+     TSV LGCAEE+LTIVAMLSVE  F+RPKEKQAQAD KKAKF QPEGDHLTLLAVYEAWK SKFSNPWC++NF+QAR++RR+QDVRKQL+SI+DRYKM++++ G+N+NKVRRAIV+GYF + AKKDPQEGYRTMVEG PVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTI+PKWLVELAP F++  DP K+T++KR +KIEPLYDRFNPP++WRLSKR+G
Sbjct:  610 QASARQRAGRAGRTGPGKCYRLYTENAYKNEMLPTTVPEIQRANLGSVVLQLKAMGINDLMGFDFMDPPPQQALVMALENLYGLGALDDEGLLTRLGKKMAEFPVEPKNAKVLL-----TSVVLGCAEEVLTIVAMLSVETVFFRPKEKQAQADQKKAKFHQPEGDHLTLLAVYEAWKNSKFSNPWCFDNFIQARAIRRAQDVRKQLLSILDRYKMDVVSCGKNFNKVRRAIVAGYFANTAKKDPQEGYRTMVEGQPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIDPKWLVELAPAFFKKGDPTKLTKRKRNEKIEPLYDRFNPPDAWRLSKRRG 947
[Close]
BLAST of mRNA_H-elongata_contig17532.4570.1 vs. uniprot
Match: A0A7S2JV85_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JV85_9STRA)

HSP 1 Score: 547 bits (1409), Expect = 3.950e-183
Identity = 264/343 (76.97%), Postives = 309/343 (90.09%), Query Frame = 1 
Query:    1 QASARQRAGRAGRTGPGKCYRLYTESAYKQEMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPIQTMVSAMENLYALGALDEEG-----------FPLEPQLSKMLIIRHEITSVELGCAEEILTIVAMLSVENPFYRPKEKQAQADMKKAKFFQPEGDHLTLLAVYEAWKASKFSNPWCYENFVQARSMRRSQDVRKQLVSIMDRYKMEILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFYRAADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRKG 996
            QASARQRAGRAGRTGPGKCYRLYTE AYK EMLS+++PEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPP+ T+V AME+L+ALGALD+EG           FPLEP LSKML++     SV+LGC++EILTI AMLSVENPFYRPK+KQAQADMKKAKF Q EGDH+TLL+VY+AW+A+KFSNPWC+ENF+QARSM+RSQDVRKQLV+IMDRYK+++++AG+NY K+  AI +G+FT+AAKKDPQEGYRT+V+ NPVYIHPSSALFNK+PEWV+YHELVLTTKEYMRNIM I+ KWL+ELAP FY++ADP KMTRQK+M+KIEPL+DRFNP +SWRLSKRKG
Sbjct:  860 QASARQRAGRAGRTGPGKCYRLYTEVAYKNEMLSTNIPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPVATLVGAMESLHALGALDDEGLLTRIGRKMAEFPLEPNLSKMLLL-----SVDLGCSDEILTITAMLSVENPFYRPKDKQAQADMKKAKFHQAEGDHITLLSVYKAWEAAKFSNPWCFENFIQARSMKRSQDVRKQLVTIMDRYKLDVVSAGKNYKKICMAITAGFFTNAAKKDPQEGYRTLVDQNPVYIHPSSALFNKNPEWVVYHELVLTTKEYMRNIMVIDAKWLIELAPAFYKSADPTKMTRQKKMEKIEPLHDRFNPKDSWRLSKRKG 1197
[Close]
BLAST of mRNA_H-elongata_contig17532.4570.1 vs. uniprot
Match: A0A1E7FST2_9STRA (Putative ATP-dependent RNA helicase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FST2_9STRA)

HSP 1 Score: 526 bits (1355), Expect = 2.280e-182
Identity = 256/343 (74.64%), Postives = 302/343 (88.05%), Query Frame = 1 
Query:    1 QASARQRAGRAGRTGPGKCYRLYTESAYKQEMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPIQTMVSAMENLYALGALDEEG-----------FPLEPQLSKMLIIRHEITSVELGCAEEILTIVAMLSVENPFYRPKEKQAQADMKKAKFFQPEGDHLTLLAVYEAWKASKFSNPWCYENFVQARSMRRSQDVRKQLVSIMDRYKMEILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIHPSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFYRAADPNKMTRQKRMQKIEPLYDRFNPPNSWRLSKRKG 996
            QASARQRAGRAGRTGPGKCYRLYTE A+K EMLS++VPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPP+ T+V A+E LYALGALDEEG           FPLEP LSKMLI+     SV+LGC+EEILTI +MLSVE+PFYRPK+KQ+QADM+KAKF Q EGDHLTLLAVY+ W+A+KFS+PWC+ENF+ ARSM+R+QDVRKQLV+IMDRY++ +++AG+NY  + RAI +G+FT+ AKKDPQEGYRT+V+ NPVYIHPSSALFNK+PE+V+YHELVLTTKEYMRNIM I+ KWL ELAP FY++ADPNK+T+QKR +KIEPL DRFNP +SWRLS+RKG
Sbjct:  270 QASARQRAGRAGRTGPGKCYRLYTEHAFKTEMLSTNVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPVATLVMALETLYALGALDEEGLLTRLGRKMAEFPLEPNLSKMLIL-----SVDLGCSEEILTITSMLSVESPFYRPKDKQSQADMRKAKFHQAEGDHLTLLAVYKGWEAAKFSSPWCFENFITARSMKRAQDVRKQLVTIMDRYRLLLISAGKNYKLICRAITAGFFTNTAKKDPQEGYRTLVDQNPVYIHPSSALFNKNPEYVIYHELVLTTKEYMRNIMVIDAKWLTELAPNFYKSADPNKITKQKRFEKIEPLVDRFNPKDSWRLSRRKG 607
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17532.4570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LEZ0_9PHAE8.430e-21793.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YV72_9STRA3.960e-20889.80Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
A0A7R9UAC0_9STRA3.700e-19279.59Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2MKF0_9STRA6.060e-19179.88Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
I2CR50_NANGC5.470e-18878.13ATP-dependent RNA helicase DHX8/PRP22 n=1 Tax=Nann... [more]
B7FYK9_PHATC1.200e-18675.22Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2S7U2_9STRA1.870e-18473.76Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
K3WHT1_GLOUD6.880e-18476.68RNA helicase n=2 Tax=Pythiaceae TaxID=4782 RepID=K... [more]
A0A7S2JV85_9STRA3.950e-18376.97Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1E7FST2_9STRA2.280e-18274.64Putative ATP-dependent RNA helicase n=1 Tax=Fragil... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17532contigH-elongata_contig17532:454..7220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score549.7
Seed ortholog evalue9.6e-154
Seed eggNOG ortholog36331.EPrPI00000014383
Preferred nameDHX8
KEGG koko:K12818
KEGG Pathwayko03040,map03040
GOsGO:0000003,GO:0000350,GO:0000375,GO:0000377,GO:0000390,GO:0000393,GO:0000398,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005739,GO:0005829,GO:0005911,GO:0006139,GO:0006325,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007530,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009506,GO:0009653,GO:0009790,GO:0009987,GO:0010171,GO:0010172,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018992,GO:0019953,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030154,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032984,GO:0032988,GO:0032991,GO:0034622,GO:0034641,GO:0040007,GO:0040021,GO:0040022,GO:0042623,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0046483,GO:0048468,GO:0048477,GO:0048589,GO:0048598,GO:0048609,GO:0048856,GO:0048869,GO:0051276,GO:0051704,GO:0055044,GO:0065003,GO:0070013,GO:0070035,GO:0071007,GO:0071013,GO:0071014,GO:0071020,GO:0071021,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.ATP-dependent RNA helicase DHX8. Source PGD
EggNOG OGs1MFHZ@121069,COG1643@1,KOG0922@2759
EC3.6.4.13
COG Functional cat.A
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Exons7
Model size999
Cds size999
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930016.9514468-CDS-H-elongata_contig17532:453..6331622930016.9514468-CDS-H-elongata_contig17532:453..633Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17532 454..633 -
1691679247.447406-CDS-H-elongata_contig17532:453..6331691679247.447406-CDS-H-elongata_contig17532:453..633Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17532 454..633 -
1622930016.9723694-CDS-H-elongata_contig17532:969..11761622930016.9723694-CDS-H-elongata_contig17532:969..1176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17532 970..1176 -
1691679247.4625397-CDS-H-elongata_contig17532:969..11761691679247.4625397-CDS-H-elongata_contig17532:969..1176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17532 970..1176 -
1622930016.9872322-CDS-H-elongata_contig17532:1785..19381622930016.9872322-CDS-H-elongata_contig17532:1785..1938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17532 1786..1938 -
1691679247.4704683-CDS-H-elongata_contig17532:1785..19381691679247.4704683-CDS-H-elongata_contig17532:1785..1938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17532 1786..1938 -
1622930017.0076687-CDS-H-elongata_contig17532:2526..26601622930017.0076687-CDS-H-elongata_contig17532:2526..2660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17532 2527..2660 -
1691679247.478271-CDS-H-elongata_contig17532:2526..26601691679247.478271-CDS-H-elongata_contig17532:2526..2660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17532 2527..2660 -
1622930017.0198321-CDS-H-elongata_contig17532:5609..56611622930017.0198321-CDS-H-elongata_contig17532:5609..5661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17532 5610..5661 -
1691679247.4858277-CDS-H-elongata_contig17532:5609..56611691679247.4858277-CDS-H-elongata_contig17532:5609..5661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17532 5610..5661 -
1622930017.0401616-CDS-H-elongata_contig17532:6095..62091622930017.0401616-CDS-H-elongata_contig17532:6095..6209Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17532 6096..6209 -
1691679247.4936492-CDS-H-elongata_contig17532:6095..62091691679247.4936492-CDS-H-elongata_contig17532:6095..6209Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17532 6096..6209 -
1622930017.0550313-CDS-H-elongata_contig17532:7061..72201622930017.0550313-CDS-H-elongata_contig17532:7061..7220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17532 7062..7220 -
1691679247.5038173-CDS-H-elongata_contig17532:7061..72201691679247.5038173-CDS-H-elongata_contig17532:7061..7220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17532 7062..7220 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17532.4570.1prot_H-elongata_contig17532.4570.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17532 454..7220 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17532.4570.1

>prot_H-elongata_contig17532.4570.1 ID=prot_H-elongata_contig17532.4570.1|Name=mRNA_H-elongata_contig17532.4570.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=333bp
QASARQRAGRAGRTGPGKCYRLYTESAYKQEMLSSSVPEIQRTNLGNVVL
QLKAMGINDLLGFDFMDPPPIQTMVSAMENLYALGALDEEGFPLEPQLSK
MLIIRHEITSVELGCAEEILTIVAMLSVENPFYRPKEKQAQADMKKAKFF
QPEGDHLTLLAVYEAWKASKFSNPWCYENFVQARSMRRSQDVRKQLVSIM
DRYKMEILTAGRNYNKVRRAIVSGYFTHAAKKDPQEGYRTMVEGNPVYIH
PSSALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPQFYRAADP
NKMTRQKRMQKIEPLYDRFNPPNSWRLSKRKG*
back to top

mRNA from alignment at H-elongata_contig17532:454..7220-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17532.4570.1 ID=mRNA_H-elongata_contig17532.4570.1|Name=mRNA_H-elongata_contig17532.4570.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6767bp|location=Sequence derived from alignment at H-elongata_contig17532:454..7220- (Himanthalia elongata Himel1 dioecious)
CAGGCGAGCGCGAGGCAAAGAGCGGGAAGGGCAGGGCGTACGGGCCCCGG
GAAGTGCTACCGCCTCTACACAGAGTCGGCCTACAAGCAGGAGATGCTTT
CCAGCTCCGTACCGGAGATACAACGTACGAACCTGGGCAACGTCGTCTTG
CAGCTAAAGGTACACAGTTACCATATTACAAAACAAGTTGAACATCGTTA
TATTTCCCCGTTTCCCGGGTTTCCATCCTATAGGTAATAAATACCCCAAA
AGTGCAAGTAGCCCTAGGAACTGTAATACATTTTATCGAAAAGGTACAGT
GTCATGTCAGCCAATAAACCTTCACCAAAACCAACGACTCAAAGCATTAT
AATTCCCTATTCTGTGAAGTAAGAAGTAATCTGAGAAGGCGAAACATGGA
GGAAATAAAAATAAATGTTTGTGCGTCACTTTTGGCAAAGTAGGAAGAAA
CGATTGGCCATCAGCGATTGATGATGAAGAACAATGCTCCGTCCTCCCTC
GTGAGGACCCGTGGTCAATAAATCAACGTCGTGCCAGCGTACGGTATGCA
AAGCTTGAGTAGCCCCACCCCCTGTCCCCTGGGTTTCCGCTCTAGGCATT
ATCGCGCCCTGTCCATCGGATTCGTTTTACCGTGTCTTGCTACGAAGTGT
ATCTTTACGTGAACATTTTTTGGATGCATATGCTCATTTGTTTTACAGTA
TTACGTTTGTTCATGTTTAATTATTGTAAACCCATAACTGGTATGTTTTA
TGTCCCATTTAAATTAATTATGCTAGTCACTGTACACATGTTTTTTCTTA
AAAACCATATCAACTAATTCCAACACTCCGAATATCCACGCCTTCTTAGC
ACCGTGAGAGGTGCAGTCAAGGTGACCGACTACAGTCAAGTTCCAATGTG
TACCAAATATTTCCCATATATCTTCGCTACTCTACACTCATATAAAAAAA
CTTGTGAACTTATTCAAGCCCTTCAAACATCCGCACCTGTTGTTGCTTGG
TTTCCGTTTAGGCAATGGGGATCAACGACCTGCTCGGGTTCGACTTCATG
GACCCTCCCCCTATCCAGACGATGGTGTCCGCGATGGAAAATCTTTACGC
CTTGGGAGCCCTCGACGAGGAAGGGGTAAGAACTACCCTCCGGAAAATAA
TTAATTCCGGAATATGACCGCACATAATAAAATATGTATGGCAAAGGAAA
AATGCAAATTAAAATTTCAAACGCGCGTCGAGTAAGAAATAGACACGTAA
TTTATCTAATTGGCACTCATCCTTTTTATCCAACCTTTTTCACTCCTATT
TTTTTCATTTTTTTGCCCAAATTGCTCAGATTTTCCACCCGGATACATAT
ATATATATATATATATATAAAGACCAGGCATGTTTTTTGTCTTTTGTTCC
TTTAATCACCTTTTAAAAACTCTTTCCCCAATACATTTCTCTCAATTTCC
GCTTTTTTTTTCTTCTTCTTATTCCTCTGTCGCTCACCATCCCCACTTTT
TTTTTCTCTTATATTTGTAACGTTAGCTACTGACGAGGCTCGGACGGAAA
ATGGCGGAGTTTCCACTCGAGCCTCAGCTGTCCAAGATGCTCATTATCAG
GCATGAAATAAGTTCAACGAAAGTTGCAAATTTAGCGTCTGATACTGGTC
CAGTCCCTCTGTTATTCTTATTCTTATTCTTATTCTATTCTTAATATTCT
TATTCTAATCTTATTATTCTATAATTTGTCTTACTATAATATTATTAAAA
AACCTTGAACTCATTCCAACCCTCCGAACATCCACGCCTTTTTAGCACAC
CATGAGAGGTACAATTCAGGGGACCAACTATCGTCAAGTTTATTATTTAT
TAATTATAGGTATAGAGTCAGCAGCGGATAATCGCCTTCGATACTGTATG
TGACTGAATCTGTAGCACGTGTCCACTGTACTAATAGTGGGGGTGGGAAA
AGAGAGATGTATATAATAATTGGTCCATAGAGTTACCTGAATAGGCTGCA
CCCGTCACTCAAGCTACCTTGAAGGCTGCTGACTCAATGCCGGCTGACTC
TCGGTGGTAAACGCCATCGGCACGCAATTACGTGGCTTGGTGAAATCGGA
ATTGACCCGACGGCGTTGGACCGTAGAGATTGACGCCATAGCGGAAAACG
AGAGGATCTCGGGAGTACGCACCAGATTCAACCTGAGTTGAGAGAATGAG
TAGACTGACTCCGGACGGGACGGCCGAACCCGTCTCGAGAGAGAGACCAA
TCGAAATCTCAGCTCGGACCGGTGACAGGGGAAAATAATTTTCTCTGTCC
AGCTGCTGACCACAAACAGTGGGCAACCAAATCCGGTTGATCGATACTCT
CCTCTAGTATAGATATAGATCCAAGGGAAATATGGAGAGGAACACTTAAG
TACTGCATCCAATATTTGGCACACGAAAATAACCCCATCCATAAAGAGCG
TGGCTGGAGAAAGGGTAAAAAACAAACGGAAAAAGAAAGAGTGTTCGACT
CCACACTTATCCGTCATATCCCATTTATCCAAGATGGTGCACGCGTCTAC
TTAAGGACTGGGAGGGGGATAGTGAACAATTAGCATCCAGTGTTGAGTAG
TGGCCTATCATCCCTCAGTTCGACAGACACTAATATTATTACCGTTTTGA
TACCACATTAGAGGTACATTTGTCTAATAATATCACCTTATTGCCTATTA
ATGAACACAATGCGGACGATGATGAGATATGCTAGGTCGAGGGCGTGGGG
TTATTGCTTATTTAATATTTTTCTTAAAAAACGTAAGATCAACCGGATTT
GGTCGCCTCCTGCTTGTGATTAGCTGAACACGGAAAAATAAACTCTCAAA
CATTTCGAACATCCGCACCTTTGAAACTGTCTGTACTGTATCGAAGATTT
CCACTGTATCGCACATGCCCACTCTACCAATAGTGGGTATGAGAAAAGAG
AGGCGTACAATAATTGGTACATGGGGTTACTTGAATAGGCTGCACCCGTT
ACTCAAGCTACCTTGAGGACTGCTGGCTCAGTGCCTGTGGACACTCGGTG
GTAAACGCCATCGGTACGCAATTACGTGACCTGATGAAATCGGGATTGGC
CCGGTGGCGGGTTGACGCTAGAGATGGACAATGTCGCGAAAAACGAGATG
ATCGAGATGATTCCGGGAGTACGCACCAGATTCAGCCTGGGTTGAGAGAA
TGAGCAGGCTGACGCGAGACGGAATTGCTGAACCCATTTCGGGCGACCAA
ATTCTCAGGCGCGAACGGGGACAGGGGAAAATTATTTTTTCCTGTTCAGC
TGACCACGAGCAGAAGGCAACCAAATCCGGTTGACCTTACTTTGCTATAT
GTTATGACCATACATACATTAATACATATACCTTCTTTTGTTCAATCTCG
AGTAGATTTCAGTTGTTTTCTTAGAGGGGCGCTGAGGCCAAAAAAATCAA
GGACCCCCCCCACCTTATATATATACTTCGAAGTATATATTTATATATAT
ATTAACATTACAATTATTTCTATAGCTTTTATACATTACTACACTAATAA
TATTAATACTATCTACCCCTTTTATTAATAATATCTACCCCTTTAAAAAT
ATATAAATAATAATGAACTCATTCAGACCCTTCGAACATCCACACTATAT
TCTATATACTTCTAAGCACCATGAGAGGTGTAGTGCAGGGGTATAGTTAT
CATCAGGTTCGAAAATAAATATTGCTACCTTTGAGCACAAAATCGTCACA
TATGATTTATCGTGCTCTCCAATGGCAAATTAATCGGGTCGACAGTATAA
TACACTATCGGGGAGAAGTGCGCCATTATCATCCCGTACACTAAGATTAT
TATTCATCATGTGGGGACGCCAAACCAGAGCGCTTCGAAAGTAACATTTA
AAAAAAAATAAGGTTATTTTTCTGTCTAGGCAAATTAGGCAAATTAATAT
TGCTAAAGCCCGGTAGAGATGATTTCGTATAATATCTGATTATTAGGGTA
AGAATAAAGGGCAGGGGGTGTTACTGGCATATTTTAAAATATTGTGCAGT
AGGAGTAGGATAGTAATATATTTAAGGGGTGTGTAGCTACATGCCCTTTA
AACGCTAAATCTAATTCACTAGAAGGGACTGAAATGTAACTAAACTTTAT
CATCGATAAGTAGACATAAGCTATATCATTGATCACTAATGAATTAAAAA
AAGATTCGTGGTCTATTATTTAAGTATATACGTCAGTTTCGCGCAAACTT
GGTTGGGTGCACCATACATATAATATCTCGATTGAGGTTTTGGTTTTGAC
TTTTAAAATTAGTAAATTTACATTTTTGTTGCTTTAATTCATCATCACTA
TTATTATAATTATTAGTAATATTACTATCCTGTCCAGTCTATGGATCCAA
TGTTTTCCCTCTTTGCTTAGCTGTACCTTAGCAGTTGGTTCGCTCGACTT
GTGTTCTTCACAAAATGGTTGCTCTTTTTCATAAAAACAAAACAACCCTC
TGACGATTTTTTGTTAACCCGTTTTTTGTTTACCCGTTGTTTTGTTGTAC
TTGTTTGGAGCCAGCGTGGAACTGGGGTGCGCTGAGGAGATTCTGACGAT
CGTGGCTATGTTATCGGTGGAAAACCCATTTTACCGCCCCAAGGAAAAAC
AGGCACAGGCGGACATGAAAAAGGCCAAATTCTTTCAGCCGGAGGTAAAT
TTTAACCCCTATTGAACTCGATCTGTTTTTTTTAGTTCTAAATTCAATAT
TAAACTCACAGATATATCATATATGGACTATGTTGTATTAAAAAAAAAAG
AGATGGCGATTTACGGCAGCCACTTAAAGAAGGCAGGCCATCTTCTATTA
TTTGGGCGCCCGTTTTTGAAGAGGTTTTGTAGAGGGGTATACCGATGTTG
CGTTAGGCTCGAGGGGGAGAGGGGGGACGTAATGTGCTCGAGTTATCATA
GTCAAAAATGGGAAGAGAGAAAGAAAATTAAGAGTAATATTGTCTTAAAT
TTTGAAGCACAGTTTCTAGATATTTTGCCAATTTATGACACGAACGTGTT
TCCATCTAATACTAATGAGATGGGTGGTGGCGGAGAGTGCTGATATTGAA
CCCCAAGTAAAGCGGGGTTCATGTTTTCTACCGGTCCTAAATATGAGGAT
ACTCTAGGTTTAGGTTTAGTTTTGCCTCAAGTGTGTTATATTTTTTTAAT
TGATGAATAATTTAAACATATACCGCTGTGTCGTTCATGGCCTTATTTTG
TATCTGCATCTGCATCTTGATCATGAGGGCAGGGCGACCACCTGACGCTC
CTTGCAGTGTACGAGGCCTGGAAAGCGAGCAAGTTCAGCAACCCGTGGTG
TTACGAGAATTTCGTGCAAGCTCGCTCCATGCGCCGCTCGCAGGACGTAC
GGAAGCAGCTAGTGTCCATCATGGACAGATACAAGGTATACTAATGTAGT
CTTAAGTAATAGCTAGATAACAGATAATATTATCGTTGTATAGATCTGTA
AAGGGGCTGGGAGGGGCAAACTGGACCAAAGCACATACCTCAAGCTGTTG
AGGCACACGTGGTAATTATACATAACTTTTTAGTAGGGCCAGGTTTTATG
CTTCGTTGTTTACCGTTAAATATGGATAAAAAGTGCTCAAACCATGGTAA
TTATACATATTTTTAGTAGGGTCATTGCTGGAACCATGGTGCTCAAACCG
TTAAATATGGATAAAAAATACCAAACCTTCTAGGTCACGGTCTTCCCGAA
GCTCTATTTTAACACGAAAAAAACGTCGTGAATAAACTAAATGTTTGATG
ACAATACTCTCTATAAGGATCTACTATACACCCCGCCAGGAGCGCCCGTG
ATATTCTCATTTTAATACTGCATTTCCTTTGTACACAATAGGTACGGTCT
TCCCTTTTCTATTACAGAAGTTTATTCTCCTTTGGCCCCTCGCGCTGCTC
TCTTTTTTTTTTACTTTTTTTTTTCGGTATCTATTTTTTATTTTATCAAA
ATATTTTCCCCTTTCATCTTGCGATCAAAATGAAAAATGAGCAGATGGAG
ATCTTGACCGCGGGTCGAAACTACAACAAGGTTAGACGCGCGATCGTCTC
GGGCTATTTTACTCACGCCGCCAAAAAGGATCCCCAGGAGGGATATCGCA
CCATGGTCGAGGGGAACCCCGTCTACATACACCCCAGCTCTGCGCTCTTC
AACAAATCGCCAGAGTGGGTGCTCTACCATGAGCTGGTCCTGACGACAAA
GGTTCGTGGCTTTTAAAGGAGGACGGGGGGCTCTCTGTCCACGCAGTGCC
GTTCTAAAACAAATATTCCGTATTTAATGTTTTAACTGTGTAAGGGAGGT
CAACTCTGTTGCTGAGGCTGTTGTTTAGAGGAAAATGTCAGCATAATCTT
GCAGCCGAGTCTAGCGTACATGCACGATGGGTGCCCCCTCGTCGCGCCGT
TGGTTCTTCAGTGCCTCCCCCCGCCCACGTCTCACACACGACCCCTTGCA
CTGACTGCTCACACACGACACGACCCCGTGTGCTCTCTCTTCCTCTCTCC
CTTTCCATCTCTGCTATTGGACATCCTCGGCCTTCAGGAGTACATGCGCA
ACATCATGACGATCGAGCCCAAGTGGCTGGTGGAGCTCGCGCCGCAGTTT
TACAGGGCTGCCGATCCAAACAAGATGACCCGACAGAAGCGCATGCAGAA
AATCGAGCCTCTCTACGACAGGTTCAACCCGCCCAATTCGTGGCGCCTCA
GCAAGCGCAAGGGTTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig17532:454..7220-

>mRNA_H-elongata_contig17532.4570.1 ID=mRNA_H-elongata_contig17532.4570.1|Name=mRNA_H-elongata_contig17532.4570.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1998bp|location=Sequence derived from alignment at H-elongata_contig17532:454..7220- (Himanthalia elongata Himel1 dioecious)
CAGGCGAGCGCGAGGCAAAGAGCGGGAAGGGCAGGGCGTACGGGCCCCGG
GAAGTGCTACCGCCTCTACACAGAGTCGGCCTACAAGCAGGAGATGCTTT
CCAGCTCCGTACCGGAGATACAACGTACGAACCTGGGCAACGTCGTCTTG
CAGCTAAAGCAGGCGAGCGCGAGGCAAAGAGCGGGAAGGGCAGGGCGTAC
GGGCCCCGGGAAGTGCTACCGCCTCTACACAGAGTCGGCCTACAAGCAGG
AGATGCTTTCCAGCTCCGTACCGGAGATACAACGTACGAACCTGGGCAAC
GTCGTCTTGCAGCTAAAGGCAATGGGGATCAACGACCTGCTCGGGTTCGA
CTTCATGGACCCTCCCCCTATCCAGACGATGGTGTCCGCGATGGAAAATC
TTTACGCCTTGGGAGCCCTCGACGAGGAAGGGGCAATGGGGATCAACGAC
CTGCTCGGGTTCGACTTCATGGACCCTCCCCCTATCCAGACGATGGTGTC
CGCGATGGAAAATCTTTACGCCTTGGGAGCCCTCGACGAGGAAGGGTTTC
CACTCGAGCCTCAGCTGTCCAAGATGCTCATTATCAGGCATGAAATAATT
TCCACTCGAGCCTCAGCTGTCCAAGATGCTCATTATCAGGCATGAAATAA
CCAGCGTGGAACTGGGGTGCGCTGAGGAGATTCTGACGATCGTGGCTATG
TTATCGGTGGAAAACCCATTTTACCGCCCCAAGGAAAAACAGGCACAGGC
GGACATGAAAAAGGCCAAATTCTTTCAGCCGGAGCCAGCGTGGAACTGGG
GTGCGCTGAGGAGATTCTGACGATCGTGGCTATGTTATCGGTGGAAAACC
CATTTTACCGCCCCAAGGAAAAACAGGCACAGGCGGACATGAAAAAGGCC
AAATTCTTTCAGCCGGAGGGCGACCACCTGACGCTCCTTGCAGTGTACGA
GGCCTGGAAAGCGAGCAAGTTCAGCAACCCGTGGTGTTACGAGAATTTCG
TGCAAGCTCGCTCCATGCGCCGCTCGCAGGACGTACGGAAGCAGCTAGTG
TCCATCATGGACAGATACAAGGGCGACCACCTGACGCTCCTTGCAGTGTA
CGAGGCCTGGAAAGCGAGCAAGTTCAGCAACCCGTGGTGTTACGAGAATT
TCGTGCAAGCTCGCTCCATGCGCCGCTCGCAGGACGTACGGAAGCAGCTA
GTGTCCATCATGGACAGATACAAGATGGAGATCTTGACCGCGGGTCGAAA
CTACAACAAGGTTAGACGCGCGATCGTCTCGGGCTATTTTACTCACGCCG
CCAAAAAGGATCCCCAGGAGGGATATCGCACCATGGTCGAGGGGAACCCC
GTCTACATACACCCCAGCTCTGCGCTCTTCAACAAATCGCCAGAGTGGGT
GCTCTACCATGAGCTGGTCCTGACGACAAAGATGGAGATCTTGACCGCGG
GTCGAAACTACAACAAGGTTAGACGCGCGATCGTCTCGGGCTATTTTACT
CACGCCGCCAAAAAGGATCCCCAGGAGGGATATCGCACCATGGTCGAGGG
GAACCCCGTCTACATACACCCCAGCTCTGCGCTCTTCAACAAATCGCCAG
AGTGGGTGCTCTACCATGAGCTGGTCCTGACGACAAAGGAGTACATGCGC
AACATCATGACGATCGAGCCCAAGTGGCTGGTGGAGCTCGCGCCGCAGTT
TTACAGGGCTGCCGATCCAAACAAGATGACCCGACAGAAGCGCATGCAGA
AAATCGAGCCTCTCTACGACAGGTTCAACCCGCCCAATTCGTGGCGCCTC
AGCAAGCGCAAGGGTTAAGAGTACATGCGCAACATCATGACGATCGAGCC
CAAGTGGCTGGTGGAGCTCGCGCCGCAGTTTTACAGGGCTGCCGATCCAA
ACAAGATGACCCGACAGAAGCGCATGCAGAAAATCGAGCCTCTCTACGAC
AGGTTCAACCCGCCCAATTCGTGGCGCCTCAGCAAGCGCAAGGGTTAA
back to top