mRNA_H-elongata_contig17526.4565.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17526.4565.1 vs. uniprot
Match: A0A6H5KUZ2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ2_9PHAE) HSP 1 Score: 127 bits (319), Expect = 2.090e-27 Identity = 96/229 (41.92%), Postives = 119/229 (51.97%), Query Frame = 1
Query: 802 AADSTRVGGGDGGVGIEKEISRIREARMTAGQIKSELDSMGVSYVGLLEKAEFVKRLAEARANPETAGEGEVDSRERVDATDSGVSTNAQDAQEVDDDSAGEGKFGEETRGGESATPDDAAIGEEPIAAEVDGEVSSPPPPVTEETKGD--------------------PSG---MSEVSAMRISQIKKELDERGVSYRGLLEKSEFVGLLADARARGITAPPTDGTGN 1419
AAD G G G++++ ++IREARMTAGQIK+ELD +GVSYVGLLEK+EFV +LAEAR + GE +S + V+ + S N ++ D E A V+ +VSS P P+G EVSAMRIS IKKELDERGV YRGL EKSEFV LL DARA+GITAPP +G+
Sbjct: 517 AADDDAEGQASGSGGVDEQAAKIREARMTAGQIKAELDVLGVSYVGLLEKSEFVMKLAEARVDGGGEAPGEGESSDAVEEEEGQASANEAGGEKSSDTXXXXXXXXXXXXXXXXXXXXXXXXDEGEPA--VENKVSSEPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAGEDATDEVSAMRISAIKKELDERGVGYRGLFEKSEFVDLLVDARAKGITAPPPSSSGD 743
BLAST of mRNA_H-elongata_contig17526.4565.1 vs. uniprot
Match: D7G5D2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D2_ECTSI) HSP 1 Score: 110 bits (275), Expect = 1.100e-22 Identity = 83/201 (41.29%), Postives = 101/201 (50.25%), Query Frame = 1
Query: 805 ADSTRVGGGDGGVGIEKEISRIREARMTAGQIKSELDSMGVSYVGLLEKAEFVKRLAEARANPETAGEGEVDSRERVDATDSGVSTNAQDAQEVDDDSAGEGKFGEETRGGESATP--DDAAIGEEPIAAEVDGEVSSPPPPVTEETKGDPSGMSEVSAMRISQIKKELDERGVSYRGLLEKSEFVGLLADARARGITAPP 1401
AD RV G GG G+ ++IREARMTAGQIK+ELD++GVSYV LLEK+EFV +LAEA E + +E+ + E+A+P +DAA E SAM +S IK+ELDERGV YRGL EKSEFV LL DARA+GITAPP
Sbjct: 247 ADRFRV-GASGGGGVGARAAKIREARMTAGQIKAELDALGVSYVSLLEKSEFVMKLAEA----------EDEKKEKXE---------------------------------EAASPAGEDAA--------------------------------DEASAMLVSAIKEELDERGVRYRGLFEKSEFVDLLVDARAKGITAPP 371
BLAST of mRNA_H-elongata_contig17526.4565.1 vs. uniprot
Match: D7G4D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D5_ECTSI) HSP 1 Score: 109 bits (272), Expect = 1.770e-21 Identity = 80/187 (42.78%), Postives = 95/187 (50.80%), Query Frame = 1
Query: 847 IEKEISRIREARMTAGQIKSELDSMGVSYVGLLEKAEFVKRLAEARANP--ETAGEGEVDSRERVDATDSGVSTNAQDAQEVDDDSAGEGKFGEETRGGESATPDDAAIGEEPIAAEVDGEVSSPPPPVTEETKGDPSGMSEVSAMRISQIKKELDERGVSYRGLLEKSEFVGLLADARARGITAPP 1401
++ + ++IREARMTAGQIK+ELD++GV YVGLLEK+EFV +LAEAR + + A EGE + DA E A E EVSAMR+S IKKELDERGV YRGL EKSEFV LL DARA+GITAPP
Sbjct: 525 VDAQAAKIREARMTAGQIKAELDALGVGYVGLLEKSEFVMKLAEARVDGGGKAALEGE-----------------SSDAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGE--------------------DAADEVSAMRVSAIKKELDERGVGYRGLFEKSEFVDLLVDARAKGITAPP 674
BLAST of mRNA_H-elongata_contig17526.4565.1 vs. uniprot
Match: D7G5M8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M8_ECTSI) HSP 1 Score: 77.0 bits (188), Expect = 3.140e-13 Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 1
Query: 1264 EVSAMRISQIKKELDERGVSYRGLLEKSEFVGLLADARARGITAPPTDGTGN 1419
+VSAMR+S IK+ELDERGV YRGL +KSEFV LL DARA GITAPP +G+
Sbjct: 18 QVSAMRVSAIKEELDERGVGYRGLFDKSEFVDLLVDARAEGITAPPLSSSGD 69
BLAST of mRNA_H-elongata_contig17526.4565.1 vs. uniprot
Match: A0A836CC67_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC67_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 3.520e-10 Identity = 60/172 (34.88%), Postives = 72/172 (41.86%), Query Frame = 1
Query: 883 MTAGQIKSELDSMGVSYVGLLEKAEFVKRLAEARANPETAGEGEVDSRERVDATDSGVSTNAQDAQEVDDDSAGEGKFGEETRGGESATPDDAAIGEEPIAAEVDGEVSSPPPPVTEETKGDPSGMSEVSAMRISQIKKELDERGVSYRGLLEKSEFVGLLADARARGITAP 1398
M A +IK+ELDSMGV Y EK+E V RLAEA+ANP A A GG + + + E+ +MR+S+IKKEL+ERGV Y GLLEKSEFV LADARAR T P
Sbjct: 51 MRASEIKAELDSMGVRYDDCFEKSELVARLAEAKANPAAAXXXXXXXXXXXXXXXXXXXXAA---------------------GGRAGS------------------------------------IGEIQSMRMSEIKKELEERGVDYSGLLEKSEFVARLADARARNGTKP 165
BLAST of mRNA_H-elongata_contig17526.4565.1 vs. uniprot
Match: A0A7S0DDV7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DDV7_9EUKA) HSP 1 Score: 63.9 bits (154), Expect = 2.000e-7 Identity = 57/187 (30.48%), Postives = 82/187 (43.85%), Query Frame = 1
Query: 850 EKEISRIREARMTAG-------QIKSELDSMGVSYVGLLEKAEFVKRLAEARANPETAGEGEVDSRERVDATDSGVSTNAQDAQEVDDDSAGEGKFGEETRGGESATPDDAAIGEEPIAAEVDGEVSSPPPPVTEETKGDPSGMSEVSAMRISQIKKELDERGVSYRGLLEKSEFVGLLADARARGI 1389
EKE + +A + AG +I+ ELD GV Y LLEK E+V+RL +AR G +D + + ++ T++ + G SA+ +T+E +VS M+I +IK ELDERGV Y+GLLEKSE+V LL A+ I
Sbjct: 91 EKEDDNVADADILAGIKKMRVSEIRKELDDFGVRYKDLLEKKEYVERLYQART-------GTIDPQYKTKPGEASGPTSST------------------AQSGFSASSKGXXXXXXXXXXXXXXXXXXXXXKITKE-----EAKEQVSKMKIKEIKAELDERGVDYKGLLEKSEYVNLLVQAKVDNI 247
BLAST of mRNA_H-elongata_contig17526.4565.1 vs. uniprot
Match: A0A7S2TYI6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TYI6_9EUKA) HSP 1 Score: 59.3 bits (142), Expect = 2.750e-7 Identity = 36/73 (49.32%), Postives = 43/73 (58.90%), Query Frame = 1
Query: 1198 GEVSSPPPPVTEETKGDPSGMSEVSAMRISQIKKELDERGVSYRGLLEKSEFVGLLADARARGITAPPTDGTG 1416
G SS P P +ET + VS MR+ +IK+ELD GVSYRGLLE+SE+V LL D R TDG G
Sbjct: 4 GVSSSSPKPDLDET------IQAVSKMRVKEIKEELDSFGVSYRGLLERSEYVDLLVDTRMNPPRVKGTDGAG 70
BLAST of mRNA_H-elongata_contig17526.4565.1 vs. uniprot
Match: A0A7R9ZLA2_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZLA2_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 2.060e-6 Identity = 58/178 (32.58%), Postives = 79/178 (44.38%), Query Frame = 1
Query: 856 EISRIREARMTAGQIKSELDSMGVSYVGLLEKAEFVKRLAEARANPETAGEGEVDSRERVDATDSGVSTNAQDAQEVDDDSAGEGKFGEETRGGESATPDDAAIGEEPIAAEVDGEVSSPPPPVTEETKGDPSGMSEVSAMRISQIKKELDERGVSYRGLLEKSEFVGLLADARARGI 1389
EIS +R AG+IK EL+S GVS LEK+E V L +AR++ T + DA S S A A++ +DD P + + EE M + AM+ S++KKEL+ERGVS + EKSEFV LA+AR G+
Sbjct: 70 EISAMR-----AGEIKKELESYGVSTKAFLEKSELVSALKKARSDGMTPKAAASTASTTADAGTSXXSGTA--AKQENDD----------------GRPREIRLQEE---------------------------MDKCKAMKASELKKELEERGVSTKTFFEKSEFVKALAEARVDGV 197
BLAST of mRNA_H-elongata_contig17526.4565.1 vs. uniprot
Match: A0A7S4DLC6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DLC6_9EUKA) HSP 1 Score: 53.5 bits (127), Expect = 2.710e-5 Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query: 1267 VSAMRISQIKKELDERGVSYRGLLEKSEFVGLLADARARGITAPPTDGTG 1416
VS MR+ +IK ELD GVSYRGLLE+SE+V LL + R + GTG
Sbjct: 31 VSKMRVKEIKDELDSYGVSYRGLLERSEYVDLLVETRMNPPKVKNSGGTG 80 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17526.4565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17526.4565.1 >prot_H-elongata_contig17526.4565.1 ID=prot_H-elongata_contig17526.4565.1|Name=mRNA_H-elongata_contig17526.4565.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=506bp RVPRVPRWTKSRGFKPAAKHRSAAAADSANDGGDDGGAAGALAREIDHIRback to top mRNA from alignment at H-elongata_contig17526:960..3037+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17526.4565.1 ID=mRNA_H-elongata_contig17526.4565.1|Name=mRNA_H-elongata_contig17526.4565.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2078bp|location=Sequence derived from alignment at H-elongata_contig17526:960..3037+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17526:960..3037+ >mRNA_H-elongata_contig17526.4565.1 ID=mRNA_H-elongata_contig17526.4565.1|Name=mRNA_H-elongata_contig17526.4565.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3036bp|location=Sequence derived from alignment at H-elongata_contig17526:960..3037+ (Himanthalia elongata Himel1 dioecious)back to top |