mRNA_H-elongata_contig175189.4562.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig175189.4562.1 vs. uniprot
Match: A0A6H5L981_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L981_9PHAE) HSP 1 Score: 139 bits (350), Expect = 1.540e-36 Identity = 66/74 (89.19%), Postives = 72/74 (97.30%), Query Frame = 1
Query: 7 KHGRVVFDGGGVEADVKVKLPKPSALEIALQIQGAYFDFAGQWTRTHTFQGSSDVVTDSVLRDFENFVYRRQKE 228
KHGRVVFDGGGVEADVKVKLPKPSALEIALQ+QGAYFDFAGQWT+THTF+G+ DVVTD VLRDF+NFVY+RQKE
Sbjct: 707 KHGRVVFDGGGVEADVKVKLPKPSALEIALQVQGAYFDFAGQWTKTHTFKGT-DVVTDDVLRDFKNFVYKRQKE 779
BLAST of mRNA_H-elongata_contig175189.4562.1 vs. uniprot
Match: W7T550_9STRA (Carboxyl-terminal protease (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T550_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 2.300e-17 Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = 1
Query: 1 FVKHGRVVFDGGGVEADVKVKLPKPSALEIALQIQGAYFDFAGQWTRTHTF------QGSSDVVTDSVLRDFENFVYRRQKEVRMRF 243
+ HGRVV DGGGVEAD+KV P+ S LE++LQ QG +FDFA +W+ HT+ Q +VTD+ ++F ++V R++KE +R+
Sbjct: 97 YTTHGRVVRDGGGVEADLKVAAPQASVLEVSLQQQGVFFDFANEWSSKHTYTPGAGVQEGRPLVTDATYQEFVDYVGRKEKEGSVRY 183
BLAST of mRNA_H-elongata_contig175189.4562.1 vs. uniprot
Match: I2CP28_NANGC (Carboxyl-terminal protease (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP28_NANGC) HSP 1 Score: 84.3 bits (207), Expect = 3.010e-17 Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = 1
Query: 1 FVKHGRVVFDGGGVEADVKVKLPKPSALEIALQIQGAYFDFAGQWTRTHTF------QGSSDVVTDSVLRDFENFVYRRQKEVRMRF 243
+ HGRVV DGGGVEAD+KV P+ S LE++LQ QG +FDFA +W+ HT+ Q +VTD+ ++F ++V R++KE +R+
Sbjct: 328 YTTHGRVVRDGGGVEADLKVAAPQASVLEVSLQQQGVFFDFANEWSSKHTYTPGAGVQEGRPLVTDATYQEFVDYVGRKEKEGSVRY 414
BLAST of mRNA_H-elongata_contig175189.4562.1 vs. uniprot
Match: A0A4D9CU61_9STRA (TSPc domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CU61_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 4.340e-17 Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 1
Query: 1 FVKHGRVVFDGGGVEADVKVKLPKPSALEIALQIQGAYFDFAGQWTRTHTF------QGSSDVVTDSVLRDFENFVYRRQKE 228
+ HGRVV DGGGVEAD+KV P+ S LE++LQ QG +FDFA +W+ HT+ Q + +VTD+ ++F ++V R++KE
Sbjct: 446 YTTHGRVVRDGGGVEADLKVAAPQASVLEVSLQQQGVFFDFANEWSSKHTYTPGAGVQEETPLVTDATYQEFVDYVGRKEKE 527
BLAST of mRNA_H-elongata_contig175189.4562.1 vs. uniprot
Match: A0A835Z050_9STRA (ClpP/crotonase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z050_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 3.850e-16 Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 10 HGRVVFDGGGVEADVKVKLPKPSALEIALQIQGAYFDFAGQWTRTHTFQGSSDVVTDSVLRDFENFVYRRQK 225
HGRVV DGGG+EADV + S+LE+AL +Q YFD+AG W+ TH F+ + VV D+ DF +V +Q+
Sbjct: 559 HGRVVRDGGGIEADVVAPEKQTSSLEVALLVQNVYFDYAGHWSATHAFKNTDRVVDDATFNDFRRYVVEKQR 630
BLAST of mRNA_H-elongata_contig175189.4562.1 vs. uniprot
Match: A0A7S0CA84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CA84_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 8.540e-15 Identity = 37/75 (49.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query: 1 FVKHGRVVFDGGGVEADVKVKLPKPSALEIALQIQGAYFDFAGQWTRTHTFQGSSDVVTDSVLRDFENFVYRRQK 225
F K GRVV DGGGVEADVKV++PK SALE+ L G D+A W+R H + + D DF FV ++QK
Sbjct: 414 FTKAGRVVSDGGGVEADVKVEMPKASALEVTLLRSGLMADYAASWSRGHELPNTRFEINDDTYADFRKFVLQKQK 488
BLAST of mRNA_H-elongata_contig175189.4562.1 vs. uniprot
Match: A0A7S2FWH4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FWH4_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 2.730e-14 Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 1
Query: 10 HGRVVFDGGGVEADVKVKLPKPSALEIALQIQGAYFDFAGQWTRTHTFQGSSDVVTDSVLRDFENF 207
HGR+V DGGGVEADVKV + S +E+ L QG FDFA +WT+++ ++ VTD+V DF+ F
Sbjct: 12 HGRIVRDGGGVEADVKVAAQEVSIIELLLTQQGTLFDFATEWTKSNAYKPGQRQVTDAVYADFKRF 77
BLAST of mRNA_H-elongata_contig175189.4562.1 vs. uniprot
Match: A0A0G4EX77_VITBC (PDZ domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EX77_VITBC) HSP 1 Score: 73.2 bits (178), Expect = 2.680e-13 Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 1
Query: 7 KHGRVVFDGGGVEADVKVKLPKPSALEIALQIQGAYFDFAGQWTRTHTFQGSSDVVTDSVLRDFENFVYRRQK 225
+ GR V DGGG+EADVKV LPK S LEI L QGA FD+A +W++ + ++G D D + F+ +V R K
Sbjct: 487 RGGRYVRDGGGIEADVKVNLPKTSPLEITLISQGAMFDYAAEWSKFNEYRGEIDSQIDDIYDAFQGWVLERVK 559
BLAST of mRNA_H-elongata_contig175189.4562.1 vs. uniprot
Match: A0A0G4F0N3_VITBC (PDZ domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F0N3_VITBC) HSP 1 Score: 73.2 bits (178), Expect = 2.700e-13 Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 1
Query: 7 KHGRVVFDGGGVEADVKVKLPKPSALEIALQIQGAYFDFAGQWTRTHTFQGSSDVVTDSVLRDFENFVYRRQK 225
+ GR V DGGG+EADVKV LPK S LEI L QGA FD+A +W++ + ++G D D + F+ +V R K
Sbjct: 703 RGGRYVRDGGGIEADVKVNLPKTSPLEITLISQGAMFDYAAEWSKFNEYRGEIDSQIDDIYDAFQGWVLERVK 775
BLAST of mRNA_H-elongata_contig175189.4562.1 vs. uniprot
Match: A0A7S4IQW6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IQW6_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 1.280e-12 Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 1
Query: 1 FVKHGRVVFDGGGVEADVKVKLPKPSALEIALQIQGAYFDFAGQWTRTHTFQGSSDVVTDSVLRDFENFVYRRQKE 228
+ K+GR V DGGG+EAD+KV++P+ SALE+ L G DFA W++ H + DV ++ R+F+ FV R KE
Sbjct: 665 YTKNGREVKDGGGIEADLKVEVPRASALEVTLLRSGVMTDFAADWSKKHELTNNFDV-DEATYREFQAFVAARDKE 739 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig175189.4562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig175189.4562.1 >prot_H-elongata_contig175189.4562.1 ID=prot_H-elongata_contig175189.4562.1|Name=mRNA_H-elongata_contig175189.4562.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp FVKHGRVVFDGGGVEADVKVKLPKPSALEIALQIQGAYFDFAGQWTRTHTback to top mRNA from alignment at H-elongata_contig175189:382..1314- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig175189.4562.1 ID=mRNA_H-elongata_contig175189.4562.1|Name=mRNA_H-elongata_contig175189.4562.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=933bp|location=Sequence derived from alignment at H-elongata_contig175189:382..1314- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig175189:382..1314- >mRNA_H-elongata_contig175189.4562.1 ID=mRNA_H-elongata_contig175189.4562.1|Name=mRNA_H-elongata_contig175189.4562.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig175189:382..1314- (Himanthalia elongata Himel1 dioecious)back to top |