mRNA_H-elongata_contig175189.4562.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig175189.4562.1
Unique NamemRNA_H-elongata_contig175189.4562.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig175189.4562.1 vs. uniprot
Match: A0A6H5L981_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L981_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.540e-36
Identity = 66/74 (89.19%), Postives = 72/74 (97.30%), Query Frame = 1
Query:    7 KHGRVVFDGGGVEADVKVKLPKPSALEIALQIQGAYFDFAGQWTRTHTFQGSSDVVTDSVLRDFENFVYRRQKE 228
            KHGRVVFDGGGVEADVKVKLPKPSALEIALQ+QGAYFDFAGQWT+THTF+G+ DVVTD VLRDF+NFVY+RQKE
Sbjct:  707 KHGRVVFDGGGVEADVKVKLPKPSALEIALQVQGAYFDFAGQWTKTHTFKGT-DVVTDDVLRDFKNFVYKRQKE 779          
BLAST of mRNA_H-elongata_contig175189.4562.1 vs. uniprot
Match: W7T550_9STRA (Carboxyl-terminal protease (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T550_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.300e-17
Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = 1
Query:    1 FVKHGRVVFDGGGVEADVKVKLPKPSALEIALQIQGAYFDFAGQWTRTHTF------QGSSDVVTDSVLRDFENFVYRRQKEVRMRF 243
            +  HGRVV DGGGVEAD+KV  P+ S LE++LQ QG +FDFA +W+  HT+      Q    +VTD+  ++F ++V R++KE  +R+
Sbjct:   97 YTTHGRVVRDGGGVEADLKVAAPQASVLEVSLQQQGVFFDFANEWSSKHTYTPGAGVQEGRPLVTDATYQEFVDYVGRKEKEGSVRY 183          
BLAST of mRNA_H-elongata_contig175189.4562.1 vs. uniprot
Match: I2CP28_NANGC (Carboxyl-terminal protease (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP28_NANGC)

HSP 1 Score: 84.3 bits (207), Expect = 3.010e-17
Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = 1
Query:    1 FVKHGRVVFDGGGVEADVKVKLPKPSALEIALQIQGAYFDFAGQWTRTHTF------QGSSDVVTDSVLRDFENFVYRRQKEVRMRF 243
            +  HGRVV DGGGVEAD+KV  P+ S LE++LQ QG +FDFA +W+  HT+      Q    +VTD+  ++F ++V R++KE  +R+
Sbjct:  328 YTTHGRVVRDGGGVEADLKVAAPQASVLEVSLQQQGVFFDFANEWSSKHTYTPGAGVQEGRPLVTDATYQEFVDYVGRKEKEGSVRY 414          
BLAST of mRNA_H-elongata_contig175189.4562.1 vs. uniprot
Match: A0A4D9CU61_9STRA (TSPc domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CU61_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.340e-17
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 1
Query:    1 FVKHGRVVFDGGGVEADVKVKLPKPSALEIALQIQGAYFDFAGQWTRTHTF------QGSSDVVTDSVLRDFENFVYRRQKE 228
            +  HGRVV DGGGVEAD+KV  P+ S LE++LQ QG +FDFA +W+  HT+      Q  + +VTD+  ++F ++V R++KE
Sbjct:  446 YTTHGRVVRDGGGVEADLKVAAPQASVLEVSLQQQGVFFDFANEWSSKHTYTPGAGVQEETPLVTDATYQEFVDYVGRKEKE 527          
BLAST of mRNA_H-elongata_contig175189.4562.1 vs. uniprot
Match: A0A835Z050_9STRA (ClpP/crotonase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z050_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 3.850e-16
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   10 HGRVVFDGGGVEADVKVKLPKPSALEIALQIQGAYFDFAGQWTRTHTFQGSSDVVTDSVLRDFENFVYRRQK 225
            HGRVV DGGG+EADV     + S+LE+AL +Q  YFD+AG W+ TH F+ +  VV D+   DF  +V  +Q+
Sbjct:  559 HGRVVRDGGGIEADVVAPEKQTSSLEVALLVQNVYFDYAGHWSATHAFKNTDRVVDDATFNDFRRYVVEKQR 630          
BLAST of mRNA_H-elongata_contig175189.4562.1 vs. uniprot
Match: A0A7S0CA84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CA84_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 8.540e-15
Identity = 37/75 (49.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    1 FVKHGRVVFDGGGVEADVKVKLPKPSALEIALQIQGAYFDFAGQWTRTHTFQGSSDVVTDSVLRDFENFVYRRQK 225
            F K GRVV DGGGVEADVKV++PK SALE+ L   G   D+A  W+R H    +   + D    DF  FV ++QK
Sbjct:  414 FTKAGRVVSDGGGVEADVKVEMPKASALEVTLLRSGLMADYAASWSRGHELPNTRFEINDDTYADFRKFVLQKQK 488          
BLAST of mRNA_H-elongata_contig175189.4562.1 vs. uniprot
Match: A0A7S2FWH4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FWH4_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.730e-14
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 1
Query:   10 HGRVVFDGGGVEADVKVKLPKPSALEIALQIQGAYFDFAGQWTRTHTFQGSSDVVTDSVLRDFENF 207
            HGR+V DGGGVEADVKV   + S +E+ L  QG  FDFA +WT+++ ++     VTD+V  DF+ F
Sbjct:   12 HGRIVRDGGGVEADVKVAAQEVSIIELLLTQQGTLFDFATEWTKSNAYKPGQRQVTDAVYADFKRF 77          
BLAST of mRNA_H-elongata_contig175189.4562.1 vs. uniprot
Match: A0A0G4EX77_VITBC (PDZ domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EX77_VITBC)

HSP 1 Score: 73.2 bits (178), Expect = 2.680e-13
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    7 KHGRVVFDGGGVEADVKVKLPKPSALEIALQIQGAYFDFAGQWTRTHTFQGSSDVVTDSVLRDFENFVYRRQK 225
            + GR V DGGG+EADVKV LPK S LEI L  QGA FD+A +W++ + ++G  D   D +   F+ +V  R K
Sbjct:  487 RGGRYVRDGGGIEADVKVNLPKTSPLEITLISQGAMFDYAAEWSKFNEYRGEIDSQIDDIYDAFQGWVLERVK 559          
BLAST of mRNA_H-elongata_contig175189.4562.1 vs. uniprot
Match: A0A0G4F0N3_VITBC (PDZ domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F0N3_VITBC)

HSP 1 Score: 73.2 bits (178), Expect = 2.700e-13
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    7 KHGRVVFDGGGVEADVKVKLPKPSALEIALQIQGAYFDFAGQWTRTHTFQGSSDVVTDSVLRDFENFVYRRQK 225
            + GR V DGGG+EADVKV LPK S LEI L  QGA FD+A +W++ + ++G  D   D +   F+ +V  R K
Sbjct:  703 RGGRYVRDGGGIEADVKVNLPKTSPLEITLISQGAMFDYAAEWSKFNEYRGEIDSQIDDIYDAFQGWVLERVK 775          
BLAST of mRNA_H-elongata_contig175189.4562.1 vs. uniprot
Match: A0A7S4IQW6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IQW6_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.280e-12
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    1 FVKHGRVVFDGGGVEADVKVKLPKPSALEIALQIQGAYFDFAGQWTRTHTFQGSSDVVTDSVLRDFENFVYRRQKE 228
            + K+GR V DGGG+EAD+KV++P+ SALE+ L   G   DFA  W++ H    + DV  ++  R+F+ FV  R KE
Sbjct:  665 YTKNGREVKDGGGIEADLKVEVPRASALEVTLLRSGVMTDFAADWSKKHELTNNFDV-DEATYREFQAFVAARDKE 739          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig175189.4562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5L981_9PHAE1.540e-3689.19PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]
W7T550_9STRA2.300e-1745.98Carboxyl-terminal protease (Fragment) n=1 Tax=Nann... [more]
I2CP28_NANGC3.010e-1745.98Carboxyl-terminal protease (Fragment) n=1 Tax=Nann... [more]
A0A4D9CU61_9STRA4.340e-1747.56TSPc domain-containing protein n=1 Tax=Nannochloro... [more]
A0A835Z050_9STRA3.850e-1648.61ClpP/crotonase-like domain-containing protein n=1 ... [more]
A0A7S0CA84_9STRA8.540e-1549.33Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S2FWH4_9STRA2.730e-1450.00Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A0G4EX77_VITBC2.680e-1347.95PDZ domain-containing protein n=1 Tax=Vitrella bra... [more]
A0A0G4F0N3_VITBC2.700e-1347.95PDZ domain-containing protein n=3 Tax=Vitrella bra... [more]
A0A7S4IQW6_9STRA1.280e-1244.74Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig175189contigH-elongata_contig175189:382..1314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.7
Seed ortholog evalue4.7e-30
Seed eggNOG ortholog2880.D7FJW2
EggNOG free text desc.Peptidase family S41
EggNOG OGs2RW0A@2759,COG0793@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930015.9127665-CDS-H-elongata_contig175189:381..5251622930015.9127665-CDS-H-elongata_contig175189:381..525Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175189 382..525 -
1691679246.936876-CDS-H-elongata_contig175189:381..5251691679246.936876-CDS-H-elongata_contig175189:381..525Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175189 382..525 -
1622930015.9300623-CDS-H-elongata_contig175189:1215..13141622930015.9300623-CDS-H-elongata_contig175189:1215..1314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175189 1216..1314 -
1691679246.9488819-CDS-H-elongata_contig175189:1215..13141691679246.9488819-CDS-H-elongata_contig175189:1215..1314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175189 1216..1314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig175189.4562.1prot_H-elongata_contig175189.4562.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig175189 382..1314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig175189.4562.1

>prot_H-elongata_contig175189.4562.1 ID=prot_H-elongata_contig175189.4562.1|Name=mRNA_H-elongata_contig175189.4562.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
FVKHGRVVFDGGGVEADVKVKLPKPSALEIALQIQGAYFDFAGQWTRTHT
FQGSSDVVTDSVLRDFENFVYRRQKEVRMRF
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mRNA from alignment at H-elongata_contig175189:382..1314-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig175189.4562.1 ID=mRNA_H-elongata_contig175189.4562.1|Name=mRNA_H-elongata_contig175189.4562.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=933bp|location=Sequence derived from alignment at H-elongata_contig175189:382..1314- (Himanthalia elongata Himel1 dioecious)
TTTGTAAAGCACGGTCGAGTGGTGTTCGATGGCGGAGGCGTGGAGGCGGA CGTAAAGGTCAAGCTGCCCAAGCCGTCCGCTCTCGAGATAGCGCTACAGG TACACTACTGTACAGTGCAGTAATGATCTTTACTGATGTCACTGATGTCA CTGGGAGGTGGTCATATTATGCCGCAGCACCGACGTCTTGCGGGACTGTT GATTACTGGAATTGCGGGACTGTTGACTGAATACCCCAAGTCGTGATAAA TAAATACTGGGGTTAGGTGAAGCAAGTCGTGGTGTGTAATGGGGCATAAC TCCACTGCTATGGGTTTCATGCCTACCACAATAGTAGTGGTAATAGTGGT AATAGTAATAGTAGTAGTAATGATGACGTCATGAATAATGTAAATGTACG CGACAGTGACGGGATCACCGACATGATTAACCGTTGACCCGATGAATTTT CAACCGGGGAGCACGAATAATCACACGTGATGATTTTGTGCTTAAATGTA GTGATGTCCTCATTCGAACCTGACGATAGTTGGTCCCCTGGACTACACCT CTCATGGTGCTAAGAAGGCGTGGATGTTTGAAGGGTCTTAATGAGTTCAT ATGTTTTTTTTAATAATAATATACTAACATACTAATAATAGTGATATCAG TATCATAGTAGTAGTAGTAGTTGTTGTAGTACAGTAGGAGTTAAAGTACT AGTATTTACTATAGTAGGAGTAGAAGGTGCCACGTATCGTTCCCCACTTT CCTTTATTTCCTTTCTATATACTAATTCCTATGTAAAAGATACAAGGTGC CTACTTCGACTTCGCGGGACAGTGGACACGGACCCACACCTTCCAGGGAT CATCGGACGTGGTCACGGATTCCGTCCTCAGGGACTTCGAGAACTTCGTC TACCGCCGGCAAAAGGAGGTACGGATGCGTTTT
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Coding sequence (CDS) from alignment at H-elongata_contig175189:382..1314-

>mRNA_H-elongata_contig175189.4562.1 ID=mRNA_H-elongata_contig175189.4562.1|Name=mRNA_H-elongata_contig175189.4562.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig175189:382..1314- (Himanthalia elongata Himel1 dioecious)
TTTGTAAAGCACGGTCGAGTGGTGTTCGATGGCGGAGGCGTGGAGGCGGA
CGTAAAGGTCAAGCTGCCCAAGCCGTCCGCTCTCGAGATAGCGCTACAGT
TTGTAAAGCACGGTCGAGTGGTGTTCGATGGCGGAGGCGTGGAGGCGGAC
GTAAAGGTCAAGCTGCCCAAGCCGTCCGCTCTCGAGATAGCGCTACAGAT
ACAAGGTGCCTACTTCGACTTCGCGGGACAGTGGACACGGACCCACACCT
TCCAGGGATCATCGGACGTGGTCACGGATTCCGTCCTCAGGGACTTCGAG
AACTTCGTCTACCGCCGGCAAAAGGAGGTACGGATGCGTTTTATACAAGG
TGCCTACTTCGACTTCGCGGGACAGTGGACACGGACCCACACCTTCCAGG
GATCATCGGACGTGGTCACGGATTCCGTCCTCAGGGACTTCGAGAACTTC
GTCTACCGCCGGCAAAAGGAGGTACGGATGCGTTTT
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