mRNA_H-elongata_contig17494.4555.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17494.4555.1
Unique NamemRNA_H-elongata_contig17494.4555.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17494.4555.1 vs. uniprot
Match: A0A6H5JIN2_9PHAE (Transket_pyr domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIN2_9PHAE)

HSP 1 Score: 327 bits (838), Expect = 7.400e-109
Identity = 156/179 (87.15%), Postives = 168/179 (93.85%), Query Frame = 1 
Query:    1 DVAFGGVFRCTVGLREKFGPDRVFNTPITEQGIVGFGIGYASMGKTAIVEIQFADYIYPAFDQLVNEAAKFRYRSGDQFNCGGLTIRAPCGAVGHGGHYHSQSPETYFAHTPGLKVVMPRDAVEAKGLLLACIREPDPVIFLEPKILYRTSVGDVPDEDYEVPLGVADIMREGTDVTLV 537
            DVAFGGVFRCT GL+E+FGPDRVF++ + EQGI GF IGYASMGKTAI EIQFADYI+PAFDQ+VNEAAKFRYRSG+QFNCGGLTIRAPCGAVGHGGHYHSQSPE+YFAHTPGLKVVMPR+A EAKGLLLA +REPDPVIF EPKILYRTSV DVPD DYEVPLGVAD+MREGTDVTLV
Sbjct:  159 DVAFGGVFRCTGGLKEQFGPDRVFDSTLCEQGIAGFAIGYASMGKTAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPCGAVGHGGHYHSQSPESYFAHTPGLKVVMPRNATEAKGLLLASVREPDPVIFFEPKILYRTSVEDVPDGDYEVPLGVADVMREGTDVTLV 337
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BLAST of mRNA_H-elongata_contig17494.4555.1 vs. uniprot
Match: A0A835ZJS3_9STRA (Thiamine diphosphate-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJS3_9STRA)

HSP 1 Score: 311 bits (798), Expect = 4.890e-104
Identity = 148/179 (82.68%), Postives = 163/179 (91.06%), Query Frame = 1 
Query:    1 DVAFGGVFRCTVGLREKFGPDRVFNTPITEQGIVGFGIGYASMGKTAIVEIQFADYIYPAFDQLVNEAAKFRYRSGDQFNCGGLTIRAPCGAVGHGGHYHSQSPETYFAHTPGLKVVMPRDAVEAKGLLLACIREPDPVIFLEPKILYRTSVGDVPDEDYEVPLGVADIMREGTDVTLV 537
            DVAFGGVFRC+VGL+E+FG  RVFNTP++EQGI GF IGYA+MG TAI E+QFADYI+PA DQLVNEAAK+RYRSG++FNCGGLTIRAPCGAVGHGGHYHSQSPE YFAHTPGLKVVMPRDA EAKGLLLA IR+PDPVIFLEPK LYRTSV DVPD DYEVPLGVA ++R G DVT+V
Sbjct:   67 DVAFGGVFRCSVGLKEEFGASRVFNTPLSEQGIAGFAIGYAAMGGTAIAEMQFADYIFPAMDQLVNEAAKYRYRSGNEFNCGGLTIRAPCGAVGHGGHYHSQSPEAYFAHTPGLKVVMPRDAREAKGLLLASIRDPDPVIFLEPKALYRTSVEDVPDGDYEVPLGVAQVLRAGADVTVV 245
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BLAST of mRNA_H-elongata_contig17494.4555.1 vs. uniprot
Match: A0A2R5GAR1_9STRA (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GAR1_9STRA)

HSP 1 Score: 297 bits (761), Expect = 5.530e-99
Identity = 137/179 (76.54%), Postives = 160/179 (89.39%), Query Frame = 1 
Query:    1 DVAFGGVFRCTVGLREKFGPDRVFNTPITEQGIVGFGIGYASMGKTAIVEIQFADYIYPAFDQLVNEAAKFRYRSGDQFNCGGLTIRAPCGAVGHGGHYHSQSPETYFAHTPGLKVVMPRDAVEAKGLLLACIREPDPVIFLEPKILYRTSVGDVPDEDYEVPLGVADIMREGTDVTLV 537
            DVAFGGVFRC++GLR++FG +RVFNTP+ EQGI GFGIGYAS G+TAI E+QFADYI+PAFDQLVNEAAK RYRSG+QFNCGGLT+RAP GA+GHGGHYHSQSPE YF HTPGLKVV+PRD ++AKGLLL+CIR+P+P IF EPK LYR SVGDVP  DY +PLG A+I++ GTDVT+V
Sbjct:   27 DVAFGGVFRCSMGLRDEFGKNRVFNTPLCEQGIAGFGIGYASTGRTAIAEVQFADYIFPAFDQLVNEAAKMRYRSGNQFNCGGLTVRAPYGAIGHGGHYHSQSPEAYFTHTPGLKVVIPRDPIQAKGLLLSCIRDPNPCIFFEPKALYRGSVGDVPVGDYTIPLGKAEIVQPGTDVTVV 205
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BLAST of mRNA_H-elongata_contig17494.4555.1 vs. uniprot
Match: A0A7S1XVL4_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVL4_9STRA)

HSP 1 Score: 299 bits (765), Expect = 5.990e-99
Identity = 140/179 (78.21%), Postives = 159/179 (88.83%), Query Frame = 1 
Query:    1 DVAFGGVFRCTVGLREKFGPDRVFNTPITEQGIVGFGIGYASMGKTAIVEIQFADYIYPAFDQLVNEAAKFRYRSGDQFNCGGLTIRAPCGAVGHGGHYHSQSPETYFAHTPGLKVVMPRDAVEAKGLLLACIREPDPVIFLEPKILYRTSVGDVPDEDYEVPLGVADIMREGTDVTLV 537
            DVAFGGVFRC+VGLRE+FGP+RVFNTP+ EQGI GF IGYA+MG+TA+ E+QFADYI+PAFDQ+VNEAAK+RYRSG QFNCG LT RAPCGAVGHGGHYHSQSPE YFA TPGLK+VMPR   EAKGLLLA IR+P+PV+F EPKILYR +V DVP  DYE+PLGVADI+R GT VT+V
Sbjct:   73 DVAFGGVFRCSVGLREEFGPERVFNTPLCEQGIAGFAIGYAAMGRTAVAEMQFADYIFPAFDQIVNEAAKYRYRSGAQFNCGSLTFRAPCGAVGHGGHYHSQSPEAYFAGTPGLKIVMPRSPREAKGLLLASIRDPNPVVFFEPKILYRAAVEDVPVGDYEIPLGVADIVRPGTHVTVV 251
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BLAST of mRNA_H-elongata_contig17494.4555.1 vs. uniprot
Match: A0A7S1C9I4_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9I4_9STRA)

HSP 1 Score: 296 bits (758), Expect = 3.220e-98
Identity = 139/179 (77.65%), Postives = 157/179 (87.71%), Query Frame = 1 
Query:    1 DVAFGGVFRCTVGLREKFGPDRVFNTPITEQGIVGFGIGYASMGKTAIVEIQFADYIYPAFDQLVNEAAKFRYRSGDQFNCGGLTIRAPCGAVGHGGHYHSQSPETYFAHTPGLKVVMPRDAVEAKGLLLACIREPDPVIFLEPKILYRTSVGDVPDEDYEVPLGVADIMREGTDVTLV 537
            DVAFGGVFRC+V LRE+FG DRVFNTP+ EQGI GF IGYA+MG+TAI E+QFADYI+PAFDQ+VNEAAK+RYRSGDQ++CG LTIRAP GAVGHGGHYHSQSPE YFAHTPGLKVV  R   +AKGLLL+CIR+PDP +F EPK LYR SV DVP  DY +PLGVAD+MREGTD+TLV
Sbjct:   50 DVAFGGVFRCSVDLREEFGEDRVFNTPLCEQGIAGFAIGYAAMGRTAIAEMQFADYIFPAFDQIVNEAAKYRYRSGDQYDCGPLTIRAPYGAVGHGGHYHSQSPEAYFAHTPGLKVVFCRSPKDAKGLLLSCIRDPDPCLFFEPKALYRASVEDVPTGDYTIPLGVADVMREGTDITLV 228
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BLAST of mRNA_H-elongata_contig17494.4555.1 vs. uniprot
Match: A0A7R9TFB0_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TFB0_9VIRI)

HSP 1 Score: 295 bits (754), Expect = 2.230e-97
Identity = 141/179 (78.77%), Postives = 155/179 (86.59%), Query Frame = 1 
Query:    1 DVAFGGVFRCTVGLREKFGPDRVFNTPITEQGIVGFGIGYASMGKTAIVEIQFADYIYPAFDQLVNEAAKFRYRSGDQFNCGGLTIRAPCGAVGHGGHYHSQSPETYFAHTPGLKVVMPRDAVEAKGLLLACIREPDPVIFLEPKILYRTSVGDVPDEDYEVPLGVADIMREGTDVTLV 537
            DVAFGGVFRCT GL EK+G DRVFNTP+ EQGI GFG+G A+ G TAI EIQFADYI+PAFDQLVNEAAK+RYRSG QF+CGGLT+RAPCGAVGHGGHYHSQSPE YFAHTPGL VVMPR   EAKGLLL+ IR  DPVIFLEPK LYRT+V +VP EDYE+PLG AD++R G DVTLV
Sbjct:   66 DVAFGGVFRCTAGLGEKYGSDRVFNTPLCEQGIAGFGVGLAAQGHTAIAEIQFADYIFPAFDQLVNEAAKYRYRSGGQFDCGGLTVRAPCGAVGHGGHYHSQSPEAYFAHTPGLVVVMPRGPREAKGLLLSSIRSRDPVIFLEPKALYRTAVDEVPAEDYELPLGQADVVRSGGDVTLV 244
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BLAST of mRNA_H-elongata_contig17494.4555.1 vs. uniprot
Match: A0A7S2S755_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S755_9STRA)

HSP 1 Score: 292 bits (748), Expect = 2.260e-96
Identity = 136/179 (75.98%), Postives = 157/179 (87.71%), Query Frame = 1 
Query:    1 DVAFGGVFRCTVGLREKFGPDRVFNTPITEQGIVGFGIGYASMGKTAIVEIQFADYIYPAFDQLVNEAAKFRYRSGDQFNCGGLTIRAPCGAVGHGGHYHSQSPETYFAHTPGLKVVMPRDAVEAKGLLLACIREPDPVIFLEPKILYRTSVGDVPDEDYEVPLGVADIMREGTDVTLV 537
            DV FGGVFRC+  LR +FG DRVFNTP+ EQGI GFGIGYA+MGKTAI EIQFADYI+PAFDQ+VNEAAK+RYRSG+QF+CGGLTIR+P GA+GHGGHYHSQSPE YF HTPGLKVVMPRD ++AKGLLL+CIR+ +P IF EPK LYR SVGDVP  DY +PLG A+I++ GTDVT+V
Sbjct:   73 DVGFGGVFRCSTNLRNEFGRDRVFNTPLCEQGIAGFGIGYAAMGKTAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFDCGGLTIRSPYGAIGHGGHYHSQSPEAYFTHTPGLKVVMPRDPIQAKGLLLSCIRDRNPCIFFEPKALYRGSVGDVPVGDYTIPLGKAEIVQPGTDVTVV 251
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BLAST of mRNA_H-elongata_contig17494.4555.1 vs. uniprot
Match: A0A1V9YPY9_9STRA (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YPY9_9STRA)

HSP 1 Score: 291 bits (746), Expect = 2.420e-96
Identity = 138/179 (77.09%), Postives = 158/179 (88.27%), Query Frame = 1 
Query:    1 DVAFGGVFRCTVGLREKFGPDRVFNTPITEQGIVGFGIGYASMGKTAIVEIQFADYIYPAFDQLVNEAAKFRYRSGDQFNCGGLTIRAPCGAVGHGGHYHSQSPETYFAHTPGLKVVMPRDAVEAKGLLLACIREPDPVIFLEPKILYRTSVGDVPDEDYEVPLGVADIMREGTDVTLV 537
            DVAFGGVFRCTV L+EKFG DRVFN+P+ EQGI GF IGYAS+G+TAI EIQFADYI+PAFDQ+VNEAAKFRYRSG+QF+CG LT RAP GAVGHG HYHSQSPE YFAHTPGLKVV+PR+  +AKGLLLA IR+P+PV+F EPK LYR SV DVP  D+E+PLGVADI+R GTDVT++
Sbjct:   54 DVAFGGVFRCTVDLKEKFGEDRVFNSPLCEQGIAGFAIGYASIGRTAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFDCGKLTFRAPYGAVGHGAHYHSQSPEAYFAHTPGLKVVIPRNPTQAKGLLLASIRDPNPVVFFEPKALYRASVSDVPVGDFELPLGVADIVRPGTDVTVL 232
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BLAST of mRNA_H-elongata_contig17494.4555.1 vs. uniprot
Match: A0A067CKD9_SAPPC (2-oxoisovalerate dehydrogenase subunit beta n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CKD9_SAPPC)

HSP 1 Score: 291 bits (745), Expect = 3.010e-96
Identity = 138/179 (77.09%), Postives = 156/179 (87.15%), Query Frame = 1 
Query:    1 DVAFGGVFRCTVGLREKFGPDRVFNTPITEQGIVGFGIGYASMGKTAIVEIQFADYIYPAFDQLVNEAAKFRYRSGDQFNCGGLTIRAPCGAVGHGGHYHSQSPETYFAHTPGLKVVMPRDAVEAKGLLLACIREPDPVIFLEPKILYRTSVGDVPDEDYEVPLGVADIMREGTDVTLV 537
            DVAFGGVFRCTV L+EKFG DRVFN+P+ EQGI GF IGYAS+G+TAI EIQFADYI+PAFDQ+VNEAAKFRYRSG+QF+CG LT RAP GAVGHG HYHSQSPE YFAHTPGLKVV+PR+  +AKGLLLA IR+P+PV+F EPK LYR SV DVP  D+ VPLG ADIMR GTD+T+V
Sbjct:   56 DVAFGGVFRCTVDLKEKFGEDRVFNSPLCEQGIAGFAIGYASIGRTAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFDCGKLTFRAPYGAVGHGAHYHSQSPEAYFAHTPGLKVVIPRNPTQAKGLLLASIRDPNPVVFFEPKALYRASVSDVPVGDFTVPLGQADIMRSGTDITIV 234
[Close]
BLAST of mRNA_H-elongata_contig17494.4555.1 vs. uniprot
Match: A0A7S2UTI8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTI8_9STRA)

HSP 1 Score: 291 bits (745), Expect = 3.320e-96
Identity = 135/179 (75.42%), Postives = 158/179 (88.27%), Query Frame = 1 
Query:    1 DVAFGGVFRCTVGLREKFGPDRVFNTPITEQGIVGFGIGYASMGKTAIVEIQFADYIYPAFDQLVNEAAKFRYRSGDQFNCGGLTIRAPCGAVGHGGHYHSQSPETYFAHTPGLKVVMPRDAVEAKGLLLACIREPDPVIFLEPKILYRTSVGDVPDEDYEVPLGVADIMREGTDVTLV 537
            DVAFGGVFRC++GL+E+FG  RVFNTP++EQG+ GFGIGYA+MG T I EIQFADYI+PAFDQLVNEAAK+RYRSG QF+CGGLT+RAPC AVGHG  YHSQSPE+YFAHTPGLKVV+PR   EAKGLLL  IR+PDPVIF EPKILYRT+V +VP+ D+E+ LG AD++R GTD+TLV
Sbjct:   52 DVAFGGVFRCSIGLKEQFGAHRVFNTPLSEQGVAGFGIGYAAMGGTCIAEIQFADYIFPAFDQLVNEAAKYRYRSGGQFDCGGLTVRAPCAAVGHGALYHSQSPESYFAHTPGLKVVVPRGPAEAKGLLLKSIRDPDPVIFFEPKILYRTAVEEVPEADFEIELGKADVIRPGTDITLV 230
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17494.4555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIN2_9PHAE7.400e-10987.15Transket_pyr domain-containing protein n=2 Tax=Ect... [more]
A0A835ZJS3_9STRA4.890e-10482.68Thiamine diphosphate-binding protein n=1 Tax=Tribo... [more]
A0A2R5GAR1_9STRA5.530e-9976.54Pyruvate dehydrogenase E1 component subunit beta, ... [more]
A0A7S1XVL4_9STRA5.990e-9978.21Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S1C9I4_9STRA3.220e-9877.65Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7R9TFB0_9VIRI2.230e-9778.77Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A7S2S755_9STRA2.260e-9675.98Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A1V9YPY9_9STRA2.420e-9677.092-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
A0A067CKD9_SAPPC3.010e-9677.092-oxoisovalerate dehydrogenase subunit beta n=2 Ta... [more]
A0A7S2UTI8_9STRA3.320e-9675.42Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17494contigH-elongata_contig17494:1979..3822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score333.6
Seed ortholog evalue5.8e-89
Seed eggNOG ortholog2880.D7FZ95
Preferred nameBCKDHB
KEGG rclassRC00027,RC00029,RC00117,RC00627,RC02743,RC02883,RC02949,RC02953
KEGG koko:K00059,ko:K00167
KEGG ReactionR04533,R04534,R04536,R04543,R04566,R04953,R04964,R07599,R07600,R07601,R07602,R07603,R07604,R07759,R07763,R10116,R10120,R10996,R10997,R11671
KEGG Pathwayko00061,ko00280,ko00333,ko00640,ko00780,ko01040,ko01100,ko01110,ko01130,ko01212,map00061,map00280,map00333,map00640,map00780,map01040,map01100,map01110,map01130,map01212
KEGG ModuleM00036,M00083,M00572
GOsGO:0003674,GO:0003824,GO:0003826,GO:0003863,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005947,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006520,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009063,GO:0009081,GO:0009083,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009267,GO:0009314,GO:0009416,GO:0009605,GO:0009628,GO:0009642,GO:0009646,GO:0009719,GO:0009725,GO:0009743,GO:0009744,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010565,GO:0014070,GO:0014074,GO:0016020,GO:0016054,GO:0016491,GO:0016624,GO:0016903,GO:0017086,GO:0018130,GO:0019216,GO:0019217,GO:0019222,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0019866,GO:0030062,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031960,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032991,GO:0033554,GO:0033865,GO:0033866,GO:0033875,GO:0033993,GO:0034030,GO:0034032,GO:0034033,GO:0034285,GO:0034641,GO:0034654,GO:0035337,GO:0035383,GO:0035384,GO:0042221,GO:0042304,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0043617,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045239,GO:0045240,GO:0045723,GO:0045834,GO:0045923,GO:0046390,GO:0046395,GO:0046483,GO:0046683,GO:0046889,GO:0046890,GO:0046949,GO:0048518,GO:0048522,GO:0048545,GO:0048580,GO:0048582,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051186,GO:0051188,GO:0051239,GO:0051240,GO:0051384,GO:0051591,GO:0051716,GO:0055086,GO:0055114,GO:0061062,GO:0061063,GO:0062012,GO:0062013,GO:0065007,GO:0070013,GO:0071496,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0080090,GO:0090407,GO:0098798,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901568,GO:1901570,GO:1901575,GO:1901576,GO:1901698,GO:1901700,GO:1902494,GO:1990204,GO:2000026
EggNOG free text desc.3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity
EggNOG OGsCOG0022@1,KOG0525@2759
EC1.1.1.100,1.2.4.4
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko01004
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBranched chain alpha-keto acid dehydrogenase E1 beta subunit
Ec32 orthologEc-06_009010.1
Exons4
Model size537
Cds size537
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17494.4555.1prot_H-elongata_contig17494.4555.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17494 1979..3822 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930015.2231815-CDS-H-elongata_contig17494:1978..21341622930015.2231815-CDS-H-elongata_contig17494:1978..2134Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17494 1979..2134 +
1691679246.6676507-CDS-H-elongata_contig17494:1978..21341691679246.6676507-CDS-H-elongata_contig17494:1978..2134Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17494 1979..2134 +
1622930015.241105-CDS-H-elongata_contig17494:2622..26551622930015.241105-CDS-H-elongata_contig17494:2622..2655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17494 2623..2655 +
1691679246.6874926-CDS-H-elongata_contig17494:2622..26551691679246.6874926-CDS-H-elongata_contig17494:2622..2655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17494 2623..2655 +
1622930015.2569978-CDS-H-elongata_contig17494:2980..31361622930015.2569978-CDS-H-elongata_contig17494:2980..3136Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17494 2981..3136 +
1691679246.7067513-CDS-H-elongata_contig17494:2980..31361691679246.7067513-CDS-H-elongata_contig17494:2980..3136Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17494 2981..3136 +
1622930015.274112-CDS-H-elongata_contig17494:3630..38221622930015.274112-CDS-H-elongata_contig17494:3630..3822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17494 3631..3822 +
1691679246.7179878-CDS-H-elongata_contig17494:3630..38221691679246.7179878-CDS-H-elongata_contig17494:3630..3822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17494 3631..3822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17494.4555.1

>prot_H-elongata_contig17494.4555.1 ID=prot_H-elongata_contig17494.4555.1|Name=mRNA_H-elongata_contig17494.4555.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp
DVAFGGVFRCTVGLREKFGPDRVFNTPITEQGIVGFGIGYASMGKTAIVE
IQFADYIYPAFDQLVNEAAKFRYRSGDQFNCGGLTIRAPCGAVGHGGHYH
SQSPETYFAHTPGLKVVMPRDAVEAKGLLLACIREPDPVIFLEPKILYRT
SVGDVPDEDYEVPLGVADIMREGTDVTLV
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mRNA from alignment at H-elongata_contig17494:1979..3822+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17494.4555.1 ID=mRNA_H-elongata_contig17494.4555.1|Name=mRNA_H-elongata_contig17494.4555.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1844bp|location=Sequence derived from alignment at H-elongata_contig17494:1979..3822+ (Himanthalia elongata Himel1 dioecious)
GACGTGGCGTTCGGAGGCGTTTTTCGTTGCACTGTTGGCCTGAGGGAGAA
GTTCGGGCCCGACCGCGTGTTTAACACCCCCATCACAGAGCAGGGCATCG
TCGGTTTCGGTATTGGCTACGCCTCGATGGGGAAGACCGCTATCGTGGAA
ATACAGGTGCTCTGCAACCGAAACGTGTATTATTTTCGTGTTGGTACTGC
TACCGAGGGTGGTGTCGGGCGGTATGAGGAAGCTTGTGAAGGTGTCCGCT
TCTCGACACCCAGAAGCGCTGTATCGTTCTTATCCAAGACGGATTGTTCT
TATCCAAAGAGAAGGAGGGAGGAAAAGGGACGAGGACGGGAGGGATGGGG
CGCGGGTTCACTAAGGATGTGATCTATTCTGGTTTCAAAATCTGACTGCT
TCTCAACGAGGGACGAAAATTCGCTCTTGCTCGTGTTTTTTGCGTTGAAT
GATGAGGAGAAATAATCTCGACTGAGGCAATAAATCGACGGCGCAACATG
GATTTGGCTTACCTTCCTGCTCGCTCACTCCGCCCCTCGCGCAAAACGCA
TTTCGCGCGCGCGATGTGATGGAACTCTCCCCCCCCGCCTGTCCATTCTC
ACACCCCTGGGTAAATGATGGACGTTCTACCCGCGGGTTTTCAGTTCGCC
GATTACATTTACCCGGCGTTCGATCAGGTGAGATCAGCCCCAGAGAATAG
CTTATATAGCGCGCAGTGGCGGAAAGATAGGGAGGAAGGGAGGGTTGGCA
ATGTCGTTGGGTTTTACCCCGCCGCTGCGCTGTCGTGAATGTTTTATTGA
GACTCGGACTGCGTCCCCGATTAACCATGATGAAGGCAAATGGATAGAAC
CTTGCACGCGGTGAACCGATCGCTTCCCAGACCGTGGAGGACGATGGTCT
AGTGCACAAGCACGACTAAGGTAGGCAACCAAAAGAAGTCCCCTGTCCTT
TTTCCCCGCGCCGTCGACGTATTTGAACCTCCCATCATTGATCACAACGC
AGCTCGTGAACGAGGCAGCCAAGTTTAGATATCGCTCGGGAGACCAGTTC
AACTGCGGCGGGCTCACCATCAGGGCACCGTGCGGCGCCGTGGGCCACGG
AGGTCACTACCATTCACAGTCACCGGAGACTTACTTCGCGCATACTCCGG
GCCTAAAGGTGTCTTTGGGTCACACGTTTTTTAGCGCTGCATGTGTGGAA
AGCTTTGTAGGTACGATGCGGTGCTATATTTTCCCTATTTCCTTCGGCGT
CCTGCGGTAAAACGCATTTCCCCAATATTGACGGGGTAAAGTAGTATCCA
TTGCGCTCATTAGCGTGCTTGTCTGAGTGTGAGTACATATGCGTGCCAGT
TTTTTCTTTTACATTGCTGCTTCAAGAGGGGACGCTGGTGTATGGTAGGC
GATACGCATGCCACCGGTTGATTGAAGCGTTGAATAGAACAGCCGCAAGA
GACCAAGGTACTTGCGCGTGTTGCCTTTTCCATATGTGGCAATTCGAGGG
AAGGCGTGACACTCATTTGATTTTGGCTGAACCCTTCGGGAAATAAGTAT
CAGTGCGCAGCAATGCGGCGAAGCAGCTCCCAGTTACATTGCGGCATGAC
AGGCGTTCGGTATCGTACACACCCCGAAAATAATTTACACGCCGCGGCAA
AGGTGGTGATGCCGAGGGATGCGGTAGAGGCCAAAGGTTTGTTACTGGCG
TGCATCCGAGAGCCCGATCCGGTGATCTTCCTCGAGCCCAAGATCCTCTA
CCGGACAAGCGTGGGGGACGTGCCCGACGAAGACTACGAGGTTCCCCTGG
GAGTTGCTGACATCATGCGCGAGGGAACGGACGTCACTCTGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig17494:1979..3822+

>mRNA_H-elongata_contig17494.4555.1 ID=mRNA_H-elongata_contig17494.4555.1|Name=mRNA_H-elongata_contig17494.4555.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at H-elongata_contig17494:1979..3822+ (Himanthalia elongata Himel1 dioecious)
GACGTGGCGTTCGGAGGCGTTTTTCGTTGCACTGTTGGCCTGAGGGAGAA
GTTCGGGCCCGACCGCGTGTTTAACACCCCCATCACAGAGCAGGGCATCG
TCGGTTTCGGTATTGGCTACGCCTCGATGGGGAAGACCGCTATCGTGGAA
ATACAGGACGTGGCGTTCGGAGGCGTTTTTCGTTGCACTGTTGGCCTGAG
GGAGAAGTTCGGGCCCGACCGCGTGTTTAACACCCCCATCACAGAGCAGG
GCATCGTCGGTTTCGGTATTGGCTACGCCTCGATGGGGAAGACCGCTATC
GTGGAAATACAGTTCGCCGATTACATTTACCCGGCGTTCGATCAGTTCGC
CGATTACATTTACCCGGCGTTCGATCAGCTCGTGAACGAGGCAGCCAAGT
TTAGATATCGCTCGGGAGACCAGTTCAACTGCGGCGGGCTCACCATCAGG
GCACCGTGCGGCGCCGTGGGCCACGGAGGTCACTACCATTCACAGTCACC
GGAGACTTACTTCGCGCATACTCCGGGCCTAAAGCTCGTGAACGAGGCAG
CCAAGTTTAGATATCGCTCGGGAGACCAGTTCAACTGCGGCGGGCTCACC
ATCAGGGCACCGTGCGGCGCCGTGGGCCACGGAGGTCACTACCATTCACA
GTCACCGGAGACTTACTTCGCGCATACTCCGGGCCTAAAGGTGGTGATGC
CGAGGGATGCGGTAGAGGCCAAAGGTTTGTTACTGGCGTGCATCCGAGAG
CCCGATCCGGTGATCTTCCTCGAGCCCAAGATCCTCTACCGGACAAGCGT
GGGGGACGTGCCCGACGAAGACTACGAGGTTCCCCTGGGAGTTGCTGACA
TCATGCGCGAGGGAACGGACGTCACTCTGGTGGTGGTGATGCCGAGGGAT
GCGGTAGAGGCCAAAGGTTTGTTACTGGCGTGCATCCGAGAGCCCGATCC
GGTGATCTTCCTCGAGCCCAAGATCCTCTACCGGACAAGCGTGGGGGACG
TGCCCGACGAAGACTACGAGGTTCCCCTGGGAGTTGCTGACATCATGCGC
GAGGGAACGGACGTCACTCTGGTG
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