mRNA_H-elongata_contig174894.4552.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig174894.4552.1
Unique NamemRNA_H-elongata_contig174894.4552.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig174894.4552.1 vs. uniprot
Match: A0A6H5KBH3_9PHAE (Protein-tyrosine-phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBH3_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 3.400e-33
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 1
Query:    1 KVVLIHCWAGRGRTGLIAACLIGKLYPELNAEQSLTRVDAYYRTRGTVAVGRSVRVSPETEGQVNQVRMFFDQVLGR 231
            KV  IHCWAGRGRTGLIA+CL+G+LYPEL+AEQSL RVD YYRTRGTVA+G+S RVSPET  Q  QVR+FF QVL R
Sbjct:  321 KVPFIHCWAGRGRTGLIASCLLGRLYPELSAEQSLNRVDRYYRTRGTVAIGKSSRVSPETPEQEEQVRLFFKQVLNR 397          
BLAST of mRNA_H-elongata_contig174894.4552.1 vs. uniprot
Match: A0A7S3AE84_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AE84_9EUKA)

HSP 1 Score: 79.0 bits (193), Expect = 2.600e-17
Identity = 40/77 (51.95%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   13 IHCWAGRGRTGLIAACLIGKLYPELNAEQSLTRVDAYYRTRGTVA--VGRSVRVSPETEGQVNQVRMF--FDQVLGR 231
            +HCW GRGRTGLIAACL+G LY ++ AE+SL RV  YY  R  +      S + SPETE Q NQVR +  F +++G+
Sbjct:    3 LHCWGGRGRTGLIAACLLGALYGDMEAEESLQRVQCYYDLRQPLGREFSASRKQSPETEEQKNQVRDWYAFKRIIGQ 79          
BLAST of mRNA_H-elongata_contig174894.4552.1 vs. uniprot
Match: A0A7S0LRA0_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LRA0_9EUKA)

HSP 1 Score: 78.2 bits (191), Expect = 2.290e-15
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    1 KVVLIHCWAGRGRTGLIAACLIGKLYPELNAEQSLTRVDAYYRTRGTVAVGRSVRV--SPETEGQVNQVRMFFD 216
            +V+ +HC+AGRGRTGL+AACL+G LY  + A+ +L RV AYYR R   A+    +   SPETE Q  QVR FF+
Sbjct:  254 EVLYLHCFAGRGRTGLVAACLLGVLYNGMKADDALERVSAYYRLRAAFALNSRAQDGHSPETELQRQQVRDFFE 327          
BLAST of mRNA_H-elongata_contig174894.4552.1 vs. uniprot
Match: A0A7S1WRL8_ALECA (Protein-tyrosine-phosphatase n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WRL8_ALECA)

HSP 1 Score: 71.6 bits (174), Expect = 3.870e-14
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    1 KVVLIHCWAGRGRTGLIAACLIGKLYPELNAEQSLTRVDAYYRTRGTVAVGRSVRVSPETEGQVNQVR 204
            +VV +HCW GRGRTG++AACL+GKL+P+ +A+  L  V A Y +RG       + +SP+T  Q N VR
Sbjct:   60 EVVYLHCWGGRGRTGVVAACLLGKLFPDRSADDCLDLVQAAYSSRGDDRDVGQLALSPQTREQRNFVR 127          
BLAST of mRNA_H-elongata_contig174894.4552.1 vs. uniprot
Match: A0A7S2JZQ2_9STRA (Protein-tyrosine-phosphatase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JZQ2_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.440e-13
Identity = 33/72 (45.83%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    1 KVVLIHCWAGRGRTGLIAACLIGKLYPEL-NAEQSLTRVDAYYRTRGTVAVGRSVRVSPETEGQVNQVRMFF 213
            +V+ +HCW G+GR GLI+ACL+G LYP++ +A+++L R+ AY   R   A G     SPET+ Q  QV  F+
Sbjct:   39 EVIYMHCWGGKGRAGLISACLLGVLYPDIKDADEALERIQAYCNVRSRGAKGVFYH-SPETDAQKGQVSEFY 109          
BLAST of mRNA_H-elongata_contig174894.4552.1 vs. uniprot
Match: A0A813CU31_9DINO (Calmodulin n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813CU31_9DINO)

HSP 1 Score: 67.4 bits (163), Expect = 2.580e-11
Identity = 28/73 (38.36%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    1 KVVLIHCWAGRGRTGLIAACLIGKLYPELNAEQSLTRVDAYYRTRGTVAVGRSVRVSPETEGQVNQVRMFFDQ 219
            +V+ +HCW GRGR+G++AACL+G ++ E+ A + L  V + Y +RG+ A   ++  SP+T+ Q   V+++  Q
Sbjct:  680 EVIYVHCWGGRGRSGVVAACLLGSMFREMTAAECLEMVQSGYSSRGSKADVGALAKSPQTDEQRQFVKLWLAQ 752          
BLAST of mRNA_H-elongata_contig174894.4552.1 vs. uniprot
Match: R1BR51_EMIHU (Protein-tyrosine-phosphatase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BR51_EMIHU)

HSP 1 Score: 67.0 bits (162), Expect = 3.360e-11
Identity = 34/71 (47.89%), Postives = 43/71 (60.56%), Query Frame = 1
Query:    1 KVVLIHCWAGRGRTGLIAACLIGKLYPELNAEQSLTRVDAYYRTRGTVAVGRSVRVSPETEGQVNQVRMFF 213
            +V+ IHCW GRGRTG++AACL+G LY  + AE++L RV      R           SPETE QV  VR +F
Sbjct:  367 QVLYIHCWGGRGRTGMVAACLLGSLYRYVGAEEALQRVQRCLSLREAGCR------SPETEAQVEAVREWF 431          
BLAST of mRNA_H-elongata_contig174894.4552.1 vs. uniprot
Match: A0A7S4T3T5_9STRA (Protein-tyrosine-phosphatase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T3T5_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.840e-10
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 1
Query:    1 KVVLIHCWAGRGRTGLIAACLIGKLYPELNAEQSLTRVDAYYRTR-GTVAVGRSVRVSPETEGQVNQVRMF 210
            + + +HCW GRGR GL+ ACL+  ++PE+N+   L  V   Y +R G  A+  ++  SP+TE Q   VR F
Sbjct:  205 RTLYLHCWGGRGRAGLVGACLVSLIWPEMNSSSVLDLVQTGYESRAGADAMAPALSRSPQTESQREFVRKF 275          
BLAST of mRNA_H-elongata_contig174894.4552.1 vs. uniprot
Match: A0A812I4Z1_9DINO (Protein-tyrosine-phosphatase n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812I4Z1_9DINO)

HSP 1 Score: 64.3 bits (155), Expect = 3.060e-10
Identity = 27/69 (39.13%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    1 KVVLIHCWAGRGRTGLIAACLIGKLYPELNAEQSLTRVDAYYRTRGTVAVGRSVRVSPETEGQVNQVRM 207
            +V+ +HCW GRGR+G++AACL+G ++ E+ A + L  V   Y +RG+ A   ++  SP+T+ Q   V++
Sbjct:  172 EVIYLHCWGGRGRSGVVAACLLGSMFGEMTAAECLEMVQCGYSSRGSKADVGALAKSPQTDEQRQFVKL 240          
BLAST of mRNA_H-elongata_contig174894.4552.1 vs. uniprot
Match: R1E8P7_EMIHU (Protein-tyrosine-phosphatase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E8P7_EMIHU)

HSP 1 Score: 62.4 bits (150), Expect = 6.730e-10
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 1
Query:    1 KVVLIHCWAGRGRTGLIAACLIGKLYPELNAEQSLTRVDAYYRTRGTVAVGRSVRVSPETEGQVNQVRMF 210
            +V+ +HCW G+GR GL+ ACL+  LY  + AE++L R   Y   R    VG ++ +SPETE Q  QVR F
Sbjct:  150 EVLYVHCWGGKGRAGLVCACLLAYLY-NIGAEEALVRTQVYCSLRNQ-GVGATL-LSPETEEQKQQVREF 216          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig174894.4552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5KBH3_9PHAE3.400e-3376.62Protein-tyrosine-phosphatase n=2 Tax=Ectocarpus Ta... [more]
A0A7S3AE84_9EUKA2.600e-1751.95Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S0LRA0_9EUKA2.290e-1552.70Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S1WRL8_ALECA3.870e-1448.53Protein-tyrosine-phosphatase n=1 Tax=Alexandrium c... [more]
A0A7S2JZQ2_9STRA1.440e-1345.83Protein-tyrosine-phosphatase n=1 Tax=Leptocylindru... [more]
A0A813CU31_9DINO2.580e-1138.36Calmodulin n=2 Tax=Symbiodinium TaxID=2949 RepID=A... [more]
R1BR51_EMIHU3.360e-1147.89Protein-tyrosine-phosphatase n=1 Tax=Emiliania hux... [more]
A0A7S4T3T5_9STRA2.840e-1040.85Protein-tyrosine-phosphatase n=1 Tax=Ditylum brigh... [more]
A0A812I4Z1_9DINO3.060e-1039.13Protein-tyrosine-phosphatase n=1 Tax=Symbiodinium ... [more]
R1E8P7_EMIHU6.730e-1045.71Protein-tyrosine-phosphatase n=2 Tax=Emiliania hux... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig174894contigH-elongata_contig174894:950..1183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue2.8e-27
Seed eggNOG ortholog2880.D8LRV7
EggNOG free text desc.Cyclin-dependent kinase inhibitor 3 (CDKN3)
EggNOG OGs2BVII@1,2S80H@2759
Ec32 ortholog descriptionProtein-tyrosine phosphatase-like
Ec32 orthologEc-08_002600.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930014.93084-CDS-H-elongata_contig174894:949..11831622930014.93084-CDS-H-elongata_contig174894:949..1183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174894 950..1183 -
1691679246.4867613-CDS-H-elongata_contig174894:949..11831691679246.4867613-CDS-H-elongata_contig174894:949..1183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174894 950..1183 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig174894.4552.1prot_H-elongata_contig174894.4552.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig174894 950..1183 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig174894.4552.1

>prot_H-elongata_contig174894.4552.1 ID=prot_H-elongata_contig174894.4552.1|Name=mRNA_H-elongata_contig174894.4552.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
KVVLIHCWAGRGRTGLIAACLIGKLYPELNAEQSLTRVDAYYRTRGTVAV
GRSVRVSPETEGQVNQVRMFFDQVLGR*
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mRNA from alignment at H-elongata_contig174894:950..1183-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig174894.4552.1 ID=mRNA_H-elongata_contig174894.4552.1|Name=mRNA_H-elongata_contig174894.4552.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at H-elongata_contig174894:950..1183- (Himanthalia elongata Himel1 dioecious)
AAGGTGGTTTTAATTCATTGTTGGGCGGGCAGGGGCAGGACCGGGCTCAT CGCCGCGTGCCTTATTGGCAAGCTTTACCCGGAACTTAACGCCGAGCAGT CGTTGACACGAGTGGACGCCTACTACCGAACGAGAGGCACAGTGGCCGTG GGTAGATCGGTCCGCGTCTCTCCAGAAACCGAGGGGCAGGTGAACCAGGT TCGGATGTTCTTCGACCAGGTCTTGGGGCGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig174894:950..1183-

>mRNA_H-elongata_contig174894.4552.1 ID=mRNA_H-elongata_contig174894.4552.1|Name=mRNA_H-elongata_contig174894.4552.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig174894:950..1183- (Himanthalia elongata Himel1 dioecious)
AAGGTGGTTTTAATTCATTGTTGGGCGGGCAGGGGCAGGACCGGGCTCAT
CGCCGCGTGCCTTATTGGCAAGCTTTACCCGGAACTTAACGCCGAGCAGT
CGTTGACACGAGTGGACGCCTACTACCGAACGAGAGGCACAGTGGCCGTG
GGTAGATCGGTCCGCGTCTCTCCAGAAACCGAGGGGCAGGTGAACCAGGT
TCGGATGTTCTTCGACCAGGTCTTGGGGCGATGAAAGGTGGTTTTAATTC
ATTGTTGGGCGGGCAGGGGCAGGACCGGGCTCATCGCCGCGTGCCTTATT
GGCAAGCTTTACCCGGAACTTAACGCCGAGCAGTCGTTGACACGAGTGGA
CGCCTACTACCGAACGAGAGGCACAGTGGCCGTGGGTAGATCGGTCCGCG
TCTCTCCAGAAACCGAGGGGCAGGTGAACCAGGTTCGGATGTTCTTCGAC
CAGGTCTTGGGGCGATGA
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