mRNA_H-elongata_contig17487.4550.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17487.4550.1 vs. uniprot
Match: D7FZG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG5_ECTSI) HSP 1 Score: 197 bits (501), Expect = 9.720e-60 Identity = 103/171 (60.23%), Postives = 126/171 (73.68%), Query Frame = 1
Query: 64 LKRLGIEIIDEDNVQDFHEQLKRAWGTVTVENQQHEYEIDAAALQATLRRAMEVLECQAWDVGAVLTTDKEVLRLNNEYRGVEAATDILSFPMADMTDQPGVLPEVRHPAEMDLGDMFVSLAYVDRQIERDREEEEDAGDMEEPDEKEDGAEWWDRGRGVSGAMSKTFDLQ 576
L+ LGI I+D+++ ++ EQL+R WGT +V+N+Q EYEID A LQ+ +R+ MEVL CQAWDVGAVLTTDKEV RLN +YRG+ +TDILSFP DM+ PGVLP+VR PAEMDLGDMF+SLAYVDRQI+RDREE D RGVSGAMS+ FD+Q
Sbjct: 79 LESLGISIMDDEDAEEVQEQLRREWGTASVQNEQKEYEIDTAELQSKMRQTMEVLGCQAWDVGAVLTTDKEVFRLNRQYRGMSTSTDILSFPNHDMSGSPGVLPKVRFPAEMDLGDMFISLAYVDRQIKRDREEXXXXXXXXXXXXXXXXXXXXDSERGVSGAMSRVFDVQ 249
BLAST of mRNA_H-elongata_contig17487.4550.1 vs. uniprot
Match: A0A835Z8A0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8A0_9STRA) HSP 1 Score: 115 bits (289), Expect = 1.170e-28 Identity = 76/191 (39.79%), Postives = 105/191 (54.97%), Query Frame = 1
Query: 64 LKRLG---IEIIDEDNVQDFHEQLKRAWGTVTVENQQHEYEIDAAALQATLRRAMEVLECQAWDVGAVLTTDKEVLRLNNEYRGVEAATDILSFPMADM-----------------TDQPGVLPEVRHPAEMDLGDMFVSLAYVDRQIERDREEEEDAGDMEEPDEKEDGAEWWDRGRGVSGAMSKTFDLQ 576
L RLG IE+++ + ++ + GTV V N Q Y+ID L+ +R A ++L WDV LTTDK V +LN++YRG + +TDILSF ++ + PG L +VRHP EMDLG+M VSLAYVDR I++D+ E++ EE D RGVSGAMS+ F +Q
Sbjct: 7 LCRLGGGSIEVLEIPSDEELAAECASRTGTVYVRNTQRSYKIDTQQLEQHIRAARDLLGYSNWDVSLWLTTDKTVRKLNSQYRGKDKSTDILSFSYNELQCSYRLLHGGSHSTKLQVETPGKLAKVRHPEEMDLGEMMVSLAYVDRVIQQDKAEQDGQSQEEEHD------------RGVSGAMSRVFTVQ 185
BLAST of mRNA_H-elongata_contig17487.4550.1 vs. uniprot
Match: A0A197JZD7_9FUNG (Zincin n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JZD7_9FUNG) HSP 1 Score: 74.7 bits (182), Expect = 1.390e-13 Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = 1
Query: 145 VTVENQQHEYEIDAAALQATLRRAMEVLECQAWDVGAVLTTDKEVLRLNNEYRGVEAATDILSFPMADMTDQPGVLPEVRHPAEMDLGDMFVSLAYVDR 441
+ ++N Q ++I ++A L + + WDVG L+ D+ V RLNN+YRG +TDILSF A+ +PG LPE R + +LGD+F+S+ YV++
Sbjct: 2 ILLKNVQKVHKICRPEVKAQLEMMLTAAGYKGWDVGVSLSGDRTVKRLNNQYRGKNKSTDILSFRFAEAI-KPGKLPEPRSDDDKNLGDLFISMKYVEK 99
BLAST of mRNA_H-elongata_contig17487.4550.1 vs. uniprot
Match: W7UC15_9STRA (Rrna maturation factor n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UC15_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.520e-13 Identity = 55/154 (35.71%), Postives = 75/154 (48.70%), Query Frame = 1
Query: 139 GTVTVENQQHEYEIDAAALQATLRRAMEVLECQAWDVGAVLTTDKEVLRLNNEYRGVEAATDILSFPMADMTDQPGV--------LPEVRHPAEMDLGDMFVSLAYVDRQIERDREEEEDAGDMEEPDEKEDGAEWWDRGRGVSGAMSKTFDLQ 576
GT+ + N Q +D L A +R +E++ DV LT D+ + N+ YRG ATDILSFP + + PG+ EV+ DLGDM VS+ YV RQ +RD+ D E G W RG SGAM++ F +Q
Sbjct: 211 GTIQIRNSQRTIALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEY-EAPGIPTSESWALTGEVK-----DLGDMIVSVPYVQRQCQRDQ-----------ADWLEKGENLWSGERGASGAMARVFGVQ 347
BLAST of mRNA_H-elongata_contig17487.4550.1 vs. uniprot
Match: A0A4D9DAX9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAX9_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 3.780e-13 Identity = 55/154 (35.71%), Postives = 74/154 (48.05%), Query Frame = 1
Query: 139 GTVTVENQQHEYEIDAAALQATLRRAMEVLECQAWDVGAVLTTDKEVLRLNNEYRGVEAATDILSFPMADMTDQPGV--------LPEVRHPAEMDLGDMFVSLAYVDRQIERDREEEEDAGDMEEPDEKEDGAEWWDRGRGVSGAMSKTFDLQ 576
GT+ + N Q +D L +R +E++ DV LT D+ + N+ YRG ATDILSFP + + PGV EV+ DLGDM VS+ YV RQ +RD+ D E G W RG SGAM++ F +Q
Sbjct: 75 GTIQIRNSQRTIALDLDLLNTQVRAILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEY-EAPGVPTSESWALTGEVK-----DLGDMIVSVPYVQRQCQRDQ-----------VDWFEKGENLWSGERGASGAMARVFGVQ 211
BLAST of mRNA_H-elongata_contig17487.4550.1 vs. uniprot
Match: A0A7S1ZIF3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZIF3_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 2.170e-11 Identity = 47/136 (34.56%), Postives = 73/136 (53.68%), Query Frame = 1
Query: 178 IDAAALQATLRRAMEVLECQAWDVGAVLTTDKEVLRLNNEYRGVEAATDILSFPMA-DMTDQPGVL--PEVRHPAEMDLGDMFVSLAYVDRQIERDREEEEDAGDMEEPDEKEDGAEWWDRGRGVSGAMSKTFDLQ 576
ID + LQ + +++ + +DV +LT D+ + +NN+ RG+ TDILSFP ++ +PGVL E H +LG+M V + Y++R+IE DRE E RGVSGAM+K +D++
Sbjct: 124 IDISTLQHKVSIIRQIIGYETYDVSILLTDDELITEINNDTRGMNKPTDILSFPFDNEVIVEPGVLGDAEFDHEDFYNLGEMIVDVPYIERRIEEDREYYEXXXXX----------XXXXXXRGVSGAMAKVYDVE 249
BLAST of mRNA_H-elongata_contig17487.4550.1 vs. uniprot
Match: B7FP01_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FP01_PHATC) HSP 1 Score: 67.0 bits (162), Expect = 2.130e-10 Identity = 48/146 (32.88%), Postives = 74/146 (50.68%), Query Frame = 1
Query: 139 GTVTVENQQHEYEIDAAALQATLRRAMEVLECQAWDVGAVLTTDKEVLRLNNEYRGVEAATDILSFPMADMTDQPGVL--PEVRHPAEMDLGDMFVSLAYVDRQIERDREEEEDAGDMEEPDEKEDGAEWWDRGRGVSGAMSKTFD 570
G + VEN Q ID L+AT+ + +++ + +DV +L D+E+ N E RG++ TD+LSFP + + PGVL P V ++GDM + + YV R + D + D+E+ D RGVS AM+ D
Sbjct: 16 GDIYVENNQESLNIDLERLKATIAKIRDLMGYRTYDVSLLLVDDQEMRETNEETRGMDEPTDVLSFPFTEAIE-PGVLTPPVVDIGDYYNMGDMMIDVPYVIRACQDDAKY--SHSDLEDED------------RGVSAAMAMVMD 146
BLAST of mRNA_H-elongata_contig17487.4550.1 vs. uniprot
Match: A0A0G0JWF8_9BACT (Endoribonuclease YbeY n=1 Tax=candidate division TM6 bacterium GW2011_GWF2_37_49 TaxID=1619083 RepID=A0A0G0JWF8_9BACT) HSP 1 Score: 65.9 bits (159), Expect = 2.830e-10 Identity = 33/99 (33.33%), Postives = 61/99 (61.62%), Query Frame = 1
Query: 145 VTVENQQHEYEIDAAALQATLRRAMEVLECQAWDVGAVLTTDKEVLRLNNEYRGVEAATDILSFPMADMTDQPGVLPEVRHPAEMDLGDMFVSLAYVDR 441
+ ++N+Q + ++D L A ++ + VL+ +D+ +LTT+K + +NN++R + ATDILSFP +PG +V P + +LGD+ +SL +V +
Sbjct: 2 ILIKNRQRKIKVDVKKLHAQAQKILGVLDYADFDLNILLTTNKSIHAINNQFRNKDKATDILSFPFHPNL-KPGQKIKVTSPDDKNLGDIIISLEHVQK 99
BLAST of mRNA_H-elongata_contig17487.4550.1 vs. uniprot
Match: A0A6A5AQV1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AQV1_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 4.200e-10 Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = 1
Query: 178 IDAAALQATLRRAMEVLEC--QAWDVGAVLTTDKEVLRLNNEYRGVEAATDILSFPMADMTDQPGVLPEVRHPAEMDLGDMFVSLAYVD 438
++ L A L + V+ + WD G +LT DK + +N +YR + TDILSFP + PGVLP+VR LGDMF+SL Y++
Sbjct: 19 VNPRKLNAQLNAMLRVIGAPGRRWDAGLLLTDDKHIQFMNKKYRHKDKPTDILSFPNYTI-QTPGVLPDVRGQDARYLGDMFLSLPYIE 106
BLAST of mRNA_H-elongata_contig17487.4550.1 vs. uniprot
Match: F2UMB9_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UMB9_SALR5) HSP 1 Score: 65.9 bits (159), Expect = 4.660e-10 Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 1
Query: 190 ALQATLRRAMEVLECQAWDVGAVLTTDKEVLRLNNEYRGVEAATDILSFPMADMTDQPGVLPEVRHPAEMDLGDMFVSLAYVDRQ 444
+L+A L+ A E+L +D+ + + + +N +YRGV A+TD+LSFP ++T PG LP V E DLGD+F+SL + Q
Sbjct: 24 SLRAHLKCARELLRVADYDMAVTFVSAERMREINQQYRGVGASTDVLSFPFHEVTT-PGTLPPVEFEDEKDLGDIFLSLDTIQAQ 107 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17487.4550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17487.4550.1 >prot_H-elongata_contig17487.4550.1 ID=prot_H-elongata_contig17487.4550.1|Name=mRNA_H-elongata_contig17487.4550.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=192bp EEIGEECHEEEGPWGELDESELKRLGIEIIDEDNVQDFHEQLKRAWGTVTback to top mRNA from alignment at H-elongata_contig17487:5441..7334+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17487.4550.1 ID=mRNA_H-elongata_contig17487.4550.1|Name=mRNA_H-elongata_contig17487.4550.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1894bp|location=Sequence derived from alignment at H-elongata_contig17487:5441..7334+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17487:5441..7334+ >mRNA_H-elongata_contig17487.4550.1 ID=mRNA_H-elongata_contig17487.4550.1|Name=mRNA_H-elongata_contig17487.4550.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1152bp|location=Sequence derived from alignment at H-elongata_contig17487:5441..7334+ (Himanthalia elongata Himel1 dioecious)back to top |