mRNA_H-elongata_contig174861.4549.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig174861.4549.1
Unique NamemRNA_H-elongata_contig174861.4549.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig174861.4549.1 vs. uniprot
Match: A0A6H5JR39_9PHAE (ATP-dependent DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JR39_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 8.900e-21
Identity = 41/54 (75.93%), Postives = 49/54 (90.74%), Query Frame = 1
Query:    1 VRGNSKPFGGVQLVLCGDFYQLSPVRIGRGSTRFCFEAKTWDISLYKSILLKQV 162
            V+GN +PFGG+QLVLCGDF+QL PV IGRGSTRFCFEA+TWD S+ +SI+LKQV
Sbjct:  300 VKGNGQPFGGIQLVLCGDFFQLPPVGIGRGSTRFCFEARTWDTSIDQSIVLKQV 353          
BLAST of mRNA_H-elongata_contig174861.4549.1 vs. uniprot
Match: A0A1D8PRM6_CANAL (ATP-dependent DNA helicase RRM3 n=2 Tax=Candida albicans TaxID=5476 RepID=A0A1D8PRM6_CANAL)

HSP 1 Score: 72.4 bits (176), Expect = 2.470e-13
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 1
Query:    1 VRGNSKPFGGVQLVLCGDFYQLSPVRIGRGSTRFCFEAKTWDISLYKSILLKQV 162
            VR N KPFGG+Q+V CGDFYQL PV    G  RFCFE K+W   + KSI+LKQV
Sbjct:  250 VRNNEKPFGGIQIVACGDFYQLPPVNKD-GKARFCFEGKSWHKVIKKSIVLKQV 302          
BLAST of mRNA_H-elongata_contig174861.4549.1 vs. uniprot
Match: UPI000711D652 (ATP-dependent DNA helicase n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711D652)

HSP 1 Score: 71.2 bits (173), Expect = 6.360e-13
Identity = 28/54 (51.85%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 VRGNSKPFGGVQLVLCGDFYQLSPVRIGRGSTRFCFEAKTWDISLYKSILLKQV 162
            +RGN  PFGG+Q+VLCGDF+QL PV +GR   +FCFE++ W+I + K +++  V
Sbjct:  210 IRGNDYPFGGIQIVLCGDFFQLPPVGLGRNGVQFCFESRWWNIVVEKVLVMTTV 263          
BLAST of mRNA_H-elongata_contig174861.4549.1 vs. uniprot
Match: A0A7S0Q3F8_9EUKA (ATP-dependent DNA helicase (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q3F8_9EUKA)

HSP 1 Score: 66.2 bits (160), Expect = 1.850e-12
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 1
Query:    1 VRGNSKPFGGVQLVLCGDFYQLSPVRIGRGSTRFCFEAKTWDISLYKSILLKQV 162
            VR N KPFGG+QLVLCGDF+QL PV  G  S +F FEAK W+  +  +  L QV
Sbjct:   25 VRNNQKPFGGLQLVLCGDFFQLPPVAKGGASYKFAFEAKAWNNCVTTTFELNQV 78          
BLAST of mRNA_H-elongata_contig174861.4549.1 vs. uniprot
Match: UPI001E11D34A (uncharacterized protein n=1 Tax=Ogataea philodendri TaxID=1378263 RepID=UPI001E11D34A)

HSP 1 Score: 67.4 bits (163), Expect = 1.430e-11
Identity = 30/55 (54.55%), Postives = 43/55 (78.18%), Query Frame = 1
Query:    1 VRGNSKPFGGVQLVLCGDFYQLSPVRIGR-GSTRFCFEAKTWDISLYKSILLKQV 162
            +RGNSKPFGG+QLVL GDF+QL PV + + G+ +FCF+A+ W   + ++ILL +V
Sbjct:  300 IRGNSKPFGGIQLVLTGDFFQLPPVSLSKTGAAKFCFDAQGWKECIDETILLTKV 354          
BLAST of mRNA_H-elongata_contig174861.4549.1 vs. uniprot
Match: A0A8H5WXE6_FUSHE (ATP-dependent DNA helicase PIF1 n=1 Tax=Fusarium heterosporum TaxID=42747 RepID=A0A8H5WXE6_FUSHE)

HSP 1 Score: 67.0 bits (162), Expect = 1.950e-11
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1
Query:    1 VRGNSKPFGGVQLVLCGDFYQLSPVRIGR--GSTRFCFEAKTWDISLYKSILLKQV 162
            +RG   PFGG+QLVLCGDF+QL PV  G   GS RFCFE+K W+ +L  +I L  +
Sbjct:  215 IRGTDLPFGGIQLVLCGDFFQLPPVTKGSDDGSPRFCFESKAWNRALQHTINLSHI 270          
BLAST of mRNA_H-elongata_contig174861.4549.1 vs. uniprot
Match: M3JAN5_CANMX (ATP-dependent DNA helicase n=2 Tax=cellular organisms TaxID=131567 RepID=M3JAN5_CANMX)

HSP 1 Score: 67.0 bits (162), Expect = 1.950e-11
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 VRGNSKPFGGVQLVLCGDFYQLSPVRIGRGSTRFCFEAKTWDISLYKSILLKQV 162
            VRG++KPFGG+Q+ +CGDFYQL PV    G  +FCF AK+W+  +  +++LKQV
Sbjct:  270 VRGSTKPFGGIQIAVCGDFYQLPPVD-NSGQPKFCFLAKSWNKVIENTVVLKQV 322          
BLAST of mRNA_H-elongata_contig174861.4549.1 vs. uniprot
Match: UPI001884FD90 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884FD90)

HSP 1 Score: 66.6 bits (161), Expect = 2.670e-11
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    1 VRGNSKPFGGVQLVLCGDFYQLSPVRIGRGSTRFCFEAKTWDISLYKSILLKQV 162
            VRGN  PFGG+QLVLCGDF QL PV  G G  RFCFE++ W   +  ++ L+++
Sbjct:  284 VRGNDSPFGGIQLVLCGDFLQLPPVLRGGGGGRFCFESEAWSRCVDVTMELREI 337          
BLAST of mRNA_H-elongata_contig174861.4549.1 vs. uniprot
Match: A0A421JK67_9ASCO (ATP-dependent DNA helicase RRM3 n=1 Tax=Spathaspora sp. JA1 TaxID=2028339 RepID=A0A421JK67_9ASCO)

HSP 1 Score: 66.6 bits (161), Expect = 2.720e-11
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 VRGNSKPFGGVQLVLCGDFYQLSPVRIGRGSTRFCFEAKTWDISLYKSILLKQV 162
            VRGNSKPFGG+Q+V  GDF+QL PV    G   FCF+AK+W+  + K+ILL++V
Sbjct:  299 VRGNSKPFGGIQIVCTGDFFQLPPVSKD-GKASFCFQAKSWNNVIKKTILLRKV 351          
BLAST of mRNA_H-elongata_contig174861.4549.1 vs. uniprot
Match: UPI00193A84F6 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A84F6)

HSP 1 Score: 66.2 bits (160), Expect = 3.660e-11
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query:    4 RGNSKPFGGVQLVLCGDFYQLSPVRIGRGSTRFCFEAKTWDISLYKSILLKQVQYITTAT 183
            + NS+PFGG+QL+LCGDF+QL PV  G      CF+AK+W+  + K I L+QV   T  T
Sbjct:  327 KKNSEPFGGIQLILCGDFFQLPPVSKGTDKKNLCFKAKSWEQCVTKCIELRQVYRQTDPT 386          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig174861.4549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JR39_9PHAE8.900e-2175.93ATP-dependent DNA helicase n=2 Tax=Ectocarpus TaxI... [more]
A0A1D8PRM6_CANAL2.470e-1362.96ATP-dependent DNA helicase RRM3 n=2 Tax=Candida al... [more]
UPI000711D6526.360e-1351.85ATP-dependent DNA helicase n=1 Tax=Blastocystis sp... [more]
A0A7S0Q3F8_9EUKA1.850e-1257.41ATP-dependent DNA helicase (Fragment) n=1 Tax=Cocc... [more]
UPI001E11D34A1.430e-1154.55uncharacterized protein n=1 Tax=Ogataea philodendr... [more]
A0A8H5WXE6_FUSHE1.950e-1155.36ATP-dependent DNA helicase PIF1 n=1 Tax=Fusarium h... [more]
M3JAN5_CANMX1.950e-1153.70ATP-dependent DNA helicase n=2 Tax=cellular organi... [more]
UPI001884FD902.670e-1153.70ATP-dependent DNA helicase PIF1-like n=1 Tax=Polli... [more]
A0A421JK67_9ASCO2.720e-1157.41ATP-dependent DNA helicase RRM3 n=1 Tax=Spathaspor... [more]
UPI00193A84F63.660e-1150.00ATP-dependent DNA helicase PIF1-like n=1 Tax=Styel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig174861contigH-elongata_contig174861:661..852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue1.2e-17
Seed eggNOG ortholog2880.D7G380
KEGG koko:K15255
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930014.5833864-CDS-H-elongata_contig174861:660..8521622930014.5833864-CDS-H-elongata_contig174861:660..852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174861 661..852 -
1691679246.4065433-CDS-H-elongata_contig174861:660..8521691679246.4065433-CDS-H-elongata_contig174861:660..852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174861 661..852 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig174861.4549.1prot_H-elongata_contig174861.4549.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig174861 661..852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig174861.4549.1

>prot_H-elongata_contig174861.4549.1 ID=prot_H-elongata_contig174861.4549.1|Name=mRNA_H-elongata_contig174861.4549.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
VRGNSKPFGGVQLVLCGDFYQLSPVRIGRGSTRFCFEAKTWDISLYKSIL
LKQVQYITTATDA*
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mRNA from alignment at H-elongata_contig174861:661..852-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig174861.4549.1 ID=mRNA_H-elongata_contig174861.4549.1|Name=mRNA_H-elongata_contig174861.4549.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig174861:661..852- (Himanthalia elongata Himel1 dioecious)
GTGCGGGGTAACTCCAAACCGTTCGGAGGCGTTCAACTGGTGCTGTGTGG GGATTTCTATCAGCTTTCCCCAGTGAGGATCGGACGCGGATCGACCCGGT TTTGCTTCGAGGCCAAGACTTGGGACATCTCGCTGTACAAATCGATCTTG CTTAAGCAGGTACAGTACATTACTACCGCAACCGACGCTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig174861:661..852-

>mRNA_H-elongata_contig174861.4549.1 ID=mRNA_H-elongata_contig174861.4549.1|Name=mRNA_H-elongata_contig174861.4549.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig174861:661..852- (Himanthalia elongata Himel1 dioecious)
GTGCGGGGTAACTCCAAACCGTTCGGAGGCGTTCAACTGGTGCTGTGTGG
GGATTTCTATCAGCTTTCCCCAGTGAGGATCGGACGCGGATCGACCCGGT
TTTGCTTCGAGGCCAAGACTTGGGACATCTCGCTGTACAAATCGATCTTG
CTTAAGCAGGTACAGTACATTACTACCGCAACCGACGCTTAGGTGCGGGG
TAACTCCAAACCGTTCGGAGGCGTTCAACTGGTGCTGTGTGGGGATTTCT
ATCAGCTTTCCCCAGTGAGGATCGGACGCGGATCGACCCGGTTTTGCTTC
GAGGCCAAGACTTGGGACATCTCGCTGTACAAATCGATCTTGCTTAAGCA
GGTACAGTACATTACTACCGCAACCGACGCTTAG
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