mRNA_H-elongata_contig17477.4545.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17477.4545.1 vs. uniprot
Match: A0A6H5JJJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ5_9PHAE) HSP 1 Score: 134 bits (336), Expect = 3.080e-37 Identity = 58/76 (76.32%), Postives = 63/76 (82.89%), Query Frame = 1
Query: 13 PSPPVWPGRFHATIFQRRGDDLGIADLWYDFAGGRNLNVIQTQSAEEDGPLFDNERANGTGYYYLPAKGKAKYCNV 240
PSPPVWPGRFHA + Q D G+ DLWYD+A GRNLN+IQTQS EEDGPLFDNERANGT YYY PAK K+KYCNV
Sbjct: 29 PSPPVWPGRFHAMMSQVINGDYGVVDLWYDYAAGRNLNIIQTQSGEEDGPLFDNERANGTTYYYHPAKAKSKYCNV 104
BLAST of mRNA_H-elongata_contig17477.4545.1 vs. uniprot
Match: D8LTP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP6_ECTSI) HSP 1 Score: 91.7 bits (226), Expect = 1.510e-20 Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 1
Query: 97 YDFAGGRNLNVIQTQSAEEDGPLFDNERANGTGYYYLPAKGKAKYCNV 240
YD++ GRNLN+IQTQS EEDGPLFDNERANGT YYY PAK K+KYCNV
Sbjct: 72 YDYSAGRNLNIIQTQSGEEDGPLFDNERANGTTYYYHPAKAKSKYCNV 119
BLAST of mRNA_H-elongata_contig17477.4545.1 vs. uniprot
Match: A0A4V6D091_SETVI (Uncharacterized protein n=3 Tax=Setaria TaxID=4554 RepID=A0A4V6D091_SETVI) HSP 1 Score: 89.4 bits (220), Expect = 2.500e-20 Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 1
Query: 4 AGDPSPPVWPGRFHATIFQRRGDDLGIADLWYDFAGGRNLNVIQTQSAEEDGPLFDNERANGTGYYYLPAKGKAKYCNVG 243
AGDP+P WP +FHAT+ ++ IADLWYD+ GGRNL+VI+ Q A+ D P FDNE NGT ++Y PA+ + VG
Sbjct: 25 AGDPTPTPWPPQFHATMVMDYHGNMSIADLWYDWPGGRNLHVIRYQLAD-DAPYFDNEWNNGTSFFYTPARRSCRSAAVG 103
BLAST of mRNA_H-elongata_contig17477.4545.1 vs. uniprot
Match: A0A835YZ81_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ81_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 5.730e-19 Identity = 41/77 (53.25%), Postives = 49/77 (63.64%), Query Frame = 1
Query: 13 PSPPVWPGRFHATIFQRRGDDLGIADLWYDFAGGRNLNVIQTQSAEEDGPLFDNERANGTGYYYLPAKGKAKYCNVG 243
P PVWP RFHA Q+RG+DLGI DL+YD+ G NLN+I+ + DGP+FD E NGT Y Y PA K K G
Sbjct: 30 PPYPVWPDRFHAVSQQKRGEDLGIVDLYYDWPRGGNLNLIR----QADGPIFDMEWGNGTSYVYTPATQKCKVVKFG 102
BLAST of mRNA_H-elongata_contig17477.4545.1 vs. uniprot
Match: A0A804M7F7_MAIZE (Uncharacterized protein n=2 Tax=Andropogoneae TaxID=147429 RepID=A0A804M7F7_MAIZE) HSP 1 Score: 82.8 bits (203), Expect = 3.150e-18 Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query: 4 AGDPSPPVWPGRFHATIFQRRGDDLGIADLWYDFAGGRNLNVIQTQSAEEDGPLFDNERANGTGYYYLPAKGKAKYCNVG 243
A DP+P WP +FHAT+ ++ +ADLWYD+ GGRNL+VI+ Q A D P +DNE NGT ++Y PA + VG
Sbjct: 28 AADPTPTPWPPQFHATLVMDYHGNMSVADLWYDWPGGRNLHVIRYQLAA-DAPYYDNEWNNGTSFFYTPALRTCRSAAVG 106
BLAST of mRNA_H-elongata_contig17477.4545.1 vs. uniprot
Match: J3LUS8_ORYBR (Uncharacterized protein n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3LUS8_ORYBR) HSP 1 Score: 81.6 bits (200), Expect = 6.520e-18 Identity = 38/80 (47.50%), Postives = 50/80 (62.50%), Query Frame = 1
Query: 4 AGDPSPPVWPGRFHATIFQRRGDDLGIADLWYDFAGGRNLNVIQTQSAEEDGPLFDNERANGTGYYYLPAKGKAKYCNVG 243
AG P P WP +FHA + +L +ADLWYD+ GGRNL+VI+ Q A D P +DNE NGT ++Y PA+ + VG
Sbjct: 3 AGPPPPTPWPPQFHAKLLMDFHGNLSLADLWYDWPGGRNLHVIRYQLAA-DAPFYDNEWNNGTSFFYTPARRTCRSAAVG 81
BLAST of mRNA_H-elongata_contig17477.4545.1 vs. uniprot
Match: B6TW11_MAIZE (Uncharacterized protein n=4 Tax=Zea mays TaxID=4577 RepID=B6TW11_MAIZE) HSP 1 Score: 82.8 bits (203), Expect = 9.790e-18 Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query: 4 AGDPSPPVWPGRFHATIFQRRGDDLGIADLWYDFAGGRNLNVIQTQSAEEDGPLFDNERANGTGYYYLPAKGKAKYCNVG 243
A DP+P WP +FHAT+ ++ +ADLWYD+ GGRNL+VI+ Q A D P +DNE NGT ++Y PA + VG
Sbjct: 28 AADPTPTPWPPQFHATLVMDYHGNMSVADLWYDWPGGRNLHVIRYQLAA-DAPYYDNEWNNGTSFFYTPALRTCRSAAVG 106
BLAST of mRNA_H-elongata_contig17477.4545.1 vs. uniprot
Match: A0A2T7BY90_9POAL (Uncharacterized protein n=3 Tax=Panicum TaxID=4539 RepID=A0A2T7BY90_9POAL) HSP 1 Score: 81.3 bits (199), Expect = 3.430e-17 Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query: 4 AGDPSPPVWPGRFHATIFQRRGDDLGIADLWYDFAGGRNLNVIQTQSAEEDGPLFDNERANGTGYYYLPAKGKAKYCNVG 243
AGDP+P WP +FHA + +L +ADLWYD+ GGRNL+V + Q A D P +DNE NGT ++Y P++ VG
Sbjct: 26 AGDPNPTPWPPQFHAKLVMDYHGNLSVADLWYDWPGGRNLHVTRYQLAA-DAPFYDNEWNNGTSFFYTPSRRACHSAAVG 104
BLAST of mRNA_H-elongata_contig17477.4545.1 vs. uniprot
Match: UPI001ADA91D5 (uncharacterized protein At4g14100-like n=1 Tax=Oryza brachyantha TaxID=4533 RepID=UPI001ADA91D5) HSP 1 Score: 81.3 bits (199), Expect = 4.530e-17 Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 1
Query: 10 DPSPPVWPGRFHATIFQRRGDDLGIADLWYDFAGGRNLNVIQTQSAEEDGPLFDNERANGTGYYYLPAKGKAKYCNVG 243
DP+P WP +FHA + +L +ADLWYD+ GGRNL+VI+ Q A D P +DNE NGT ++Y PA+ + VG
Sbjct: 35 DPTPTPWPPQFHAKLLMDFHGNLSLADLWYDWPGGRNLHVIRYQLAA-DAPFYDNEWNNGTSFFYTPARRTCRSAAVG 111
BLAST of mRNA_H-elongata_contig17477.4545.1 vs. uniprot
Match: A0A6G1D1J0_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1D1J0_9ORYZ) HSP 1 Score: 80.9 bits (198), Expect = 5.610e-17 Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 1
Query: 10 DPSPPVWPGRFHATIFQRRGDDLGIADLWYDFAGGRNLNVIQTQSAEEDGPLFDNERANGTGYYYLPAKGKAKYCNVG 243
DP P WP RFHA + ++ +ADLWYD+ GGRNL+VI+ Q A D P +DNE NGT ++Y PA+ + VG
Sbjct: 28 DPKPTPWPPRFHAKLVMDFHGNMSLADLWYDWPGGRNLHVIRYQLAG-DAPFYDNEWNNGTSFFYTPARRTCRTAAVG 104 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17477.4545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17477.4545.1 >prot_H-elongata_contig17477.4545.1 ID=prot_H-elongata_contig17477.4545.1|Name=mRNA_H-elongata_contig17477.4545.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp TAGDPSPPVWPGRFHATIFQRRGDDLGIADLWYDFAGGRNLNVIQTQSAEback to top mRNA from alignment at H-elongata_contig17477:1127..1687+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17477.4545.1 ID=mRNA_H-elongata_contig17477.4545.1|Name=mRNA_H-elongata_contig17477.4545.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=561bp|location=Sequence derived from alignment at H-elongata_contig17477:1127..1687+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17477:1127..1687+ >mRNA_H-elongata_contig17477.4545.1 ID=mRNA_H-elongata_contig17477.4545.1|Name=mRNA_H-elongata_contig17477.4545.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig17477:1127..1687+ (Himanthalia elongata Himel1 dioecious)back to top |