mRNA_H-elongata_contig17458.4538.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17458.4538.1
Unique NamemRNA_H-elongata_contig17458.4538.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17458.4538.1 vs. uniprot
Match: A0A6H5KGT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGT1_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 3.180e-54
Identity = 99/168 (58.93%), Postives = 120/168 (71.43%), Query Frame = 1
Query:    1 FVNNNIWTSAGLANGAVGVVVHMHWPEGRAPPSLPDVVFVRMKNYSGPQYFEDT-SVDIAGQAFDLTNVIPIFPLEVVDDQPTPARRGHGQATRGPGDQPLARCVRRQLPLAVAFAITIHKSQGQSLLRAVVDIGSSEQTDGQTFTALIRLRTMEGLLLEDIDLDRLL 501
            FVNNN W SAGLANGAVG VVHM W EG+ PP LP+VV+VR++NY GPQYFE     D A    DLTN+ PI P++V+DDQP   RR      RG G   +ARC R QLPL +AF ITI+KSQG +LLR  +DIG+SE++DGQ+FTA  R RT+E +LLE   L+R L
Sbjct:   90 FVNNNNWVSAGLANGAVGEVVHMQWAEGQTPPQLPEVVWVRVENYRGPQYFEQPLRRDWADGEIDLTNLCPIAPMDVMDDQPPTGRR------RGDGTS-IARCFRMQLPLMLAFGITIYKSQGNTLLRCFLDIGASERSDGQSFTAFSRCRTLENMLLEPFSLERFL 250          
BLAST of mRNA_H-elongata_contig17458.4538.1 vs. uniprot
Match: A0A6H5K558_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K558_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 9.720e-53
Identity = 99/168 (58.93%), Postives = 121/168 (72.02%), Query Frame = 1
Query:    1 FVNNNIWTSAGLANGAVGVVVHMHWPEGRAPPSLPDVVFVRMKNYSGPQYFEDT-SVDIAGQAFDLTNVIPIFPLEVVDDQPTPARRGHGQATRGPGDQPLARCVRRQLPLAVAFAITIHKSQGQSLLRAVVDIGSSEQTDGQTFTALIRLRTMEGLLLEDIDLDRLL 501
            FVNNN+W SAGLANGAVG VVHM W EG+ PP LP+VV+VR++NY GPQYFE     D A    DLTN+ PI P++V+DDQP   RR      RG G   +ARC R QLPL +AF ITI+KSQG +LLR  +DIG+SE++DGQ+FTA  R RT+E +LLE   L+R L
Sbjct:  649 FVNNNVWVSAGLANGAVGEVVHMQWAEGQTPPQLPEVVWVRVENYRGPQYFEQPLRRDWADGEIDLTNLCPIAPMDVMDDQPPTGRR------RGDGTS-IARCFRMQLPLMLAFGITIYKSQGNTLLRCFLDIGASERSDGQSFTAFSRCRTLENMLLEPFSLERFL 809          
BLAST of mRNA_H-elongata_contig17458.4538.1 vs. uniprot
Match: A0A6H5KDL6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL6_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 9.600e-52
Identity = 96/168 (57.14%), Postives = 119/168 (70.83%), Query Frame = 1
Query:    1 FVNNNIWTSAGLANGAVGVVVHMHWPEGRAPPSLPDVVFVRMKNYSGPQYFEDT-SVDIAGQAFDLTNVIPIFPLEVVDDQPTPARRGHGQATRGPGDQPLARCVRRQLPLAVAFAITIHKSQGQSLLRAVVDIGSSEQTDGQTFTALIRLRTMEGLLLEDIDLDRLL 501
            FV+N +W SAGLANGAVG VVHM W EG+ PP LP+VV+VR++NY GPQYFE     D A    DLTN+ PI P++V+DDQP   RR      RG G   +ARC R QLPL +AF ITI+KS G +LLR  +DIG+SE++DGQ+FTA  R RT+E +LLE   L+R L
Sbjct:  245 FVHNIVWVSAGLANGAVGEVVHMQWAEGQTPPQLPEVVWVRVENYRGPQYFEQPLRRDWADGEIDLTNLCPIAPMDVMDDQPPTGRR------RGDGTS-IARCFRMQLPLMLAFGITIYKSHGNTLLRCSLDIGASERSDGQSFTAFSRCRTLENMLLEPFSLERFL 405          
BLAST of mRNA_H-elongata_contig17458.4538.1 vs. uniprot
Match: A0A6H5K692_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K692_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 1.980e-47
Identity = 90/164 (54.88%), Postives = 111/164 (67.68%), Query Frame = 1
Query:    1 FVNNNIWTSAGLANGAVGVVVHMHWPEGRAPPSLPDVVFVRMKNYSGPQYF-EDTSVDIAGQAFDLTNVIPIFPLEVVDDQPTPA--RRGHGQATRGPGDQPLARCVRRQLPLAVAFAITIHKSQGQSLLRAVVDIGSSEQTDGQTFTALIRLRTMEGLLLEDI 483
            F+NNN+WTS GLANGA G VVHM W  G  PPSLP+VV+VR++NY G QYF E       G+  DL NV+PI P++  DD P  A  RRG G  T   G     RC+R QLPL +AF ITIHKSQG +LLR  +DIG  E++DGQTFTAL R R ++ +LL+ +
Sbjct: 1459 FINNNVWTSGGLANGAAGEVVHMQWAPGTQPPSLPEVVWVRVENYRGEQYFSEPLERPWGGRVVDLRNVVPISPIDAPDDHPPAALRRRGGGANTNAQG-----RCIRTQLPLMLAFGITIHKSQGATLLRCFLDIGEQEKSDGQTFTALSRCRALDNMLLQPL 1617          
BLAST of mRNA_H-elongata_contig17458.4538.1 vs. uniprot
Match: A0A814LJU9_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814LJU9_9BILA)

HSP 1 Score: 101 bits (252), Expect = 3.420e-23
Identity = 59/165 (35.76%), Postives = 89/165 (53.94%), Query Frame = 1
Query:    4 VNNNIWTSAGLANGAVGVVVHMHWPEGRAPPSLPDVVFVRMKNYSGPQYFEDTSVDIAGQAFDLTNVIPIFPLEVVDDQPTPARRGHGQATRGPGDQPLARCVRRQLPLAVAFAITIHKSQGQSLLRAVVDIGSSEQTDGQTFTALIRLRTMEGLLLEDIDLDRL 498
            + NN+WTS GL N A G++  +  P G     LP+ + + +++Y GPQ+F+D          D  N IPI P+ +       A++  G               R QLP+ + +A+TIHKSQGQ+L +AV+D+G+SE + G TF AL RL+ +   L+     DRL
Sbjct:   98 LTNNLWTSRGLVNSANGIIRDIIVPIGYTRGDLPETLIIEVEDYDGPQFFDD---------LDKHNYIPINPISIF------AKQASG--------------TRTQLPIRLGYAMTIHKSQGQTLKKAVIDLGNSEISLGLTFVALSRLKNINDFLIVAFPFDRL 233          
BLAST of mRNA_H-elongata_contig17458.4538.1 vs. uniprot
Match: A0A8H5KS06_9HYPO (ATP-dependent DNA helicase n=1 Tax=Fusarium pseudoanthophilum TaxID=48495 RepID=A0A8H5KS06_9HYPO)

HSP 1 Score: 103 bits (258), Expect = 1.090e-22
Identity = 59/163 (36.20%), Postives = 91/163 (55.83%), Query Frame = 1
Query:    4 VNNNIWTSAGLANGAVGVVVHMHW---PEGRAPPSL-PDVVFVRMKNYSGPQYFEDTSVDIAGQAFDLTNVIPIFPLEVVDDQPTPARRGHGQATRGPGDQPLARCVRRQLPLAVAFAITIHKSQGQSLLRAVVDIGSSEQTDGQTFTALIRLRTMEGLLLED 480
            +  N+WT+ GL NGAVG+V  + W   P G  P  + P+V+ VR + Y+GP YF+D   D+     D+T +IPIF             R   +   G        C R+Q PL +++AITIHKSQG +L +AV  I   + T G ++ A+ R++T++G++ E+
Sbjct: 1680 LTENLWTAMGLVNGAVGIVEDLAWEDRPGGVNPRRIAPEVIMVRFEGYTGPPYFDDEGPDLP----DMTKIIPIF-------------RSTREYVVGNN-----LCTRKQFPLTISYAITIHKSQGTTLDKAVAHIAGKDFTPGLSYVAVSRVKTLQGIMFEE 1820          
BLAST of mRNA_H-elongata_contig17458.4538.1 vs. uniprot
Match: UPI000A2A6B3A (uncharacterized protein LOC110247455 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A6B3A)

HSP 1 Score: 102 bits (255), Expect = 2.480e-22
Identity = 62/162 (38.27%), Postives = 86/162 (53.09%), Query Frame = 1
Query:   13 NIWTSAGLANGAVGVVVHMHWPEGRAPPSLPDVVFVRMKNYSGPQYFEDTSVDIAGQAFDLTNVIPIFPLEVVDDQPTPARRGHGQATRGPGDQPLARCVRRQLPLAVAFAITIHKSQGQSLLRAVVDIGSSEQTDGQTFTALIRLRTMEGLLLEDIDLDRL 498
            N+W S GL NGA G VV + +     PP LP  V VR  NY GP   ED           L   +PI P+ V             QA  G  +       R+QLPL +A+A+TIHKSQG +L +A +DIG SE+T G ++ A+ R++T+  L++E +  +RL
Sbjct:  551 NLWASVGLCNGATGTVVDIIYAVDHRPPDLPIAVIVRFDNYQGPSLRED-----------LPMCVPICPITV-----------SAQALEGVQE-------RQQLPLKLAYALTIHKSQGLTLSKAWIDIGKSEKTPGISYVAISRVKTLSSLVIEPMTFERL 683          
BLAST of mRNA_H-elongata_contig17458.4538.1 vs. uniprot
Match: UPI000A2A83DD (uncharacterized protein LOC110235051 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A83DD)

HSP 1 Score: 101 bits (251), Expect = 9.290e-22
Identity = 59/162 (36.42%), Postives = 87/162 (53.70%), Query Frame = 1
Query:   13 NIWTSAGLANGAVGVVVHMHWPEGRAPPSLPDVVFVRMKNYSGPQYFEDTSVDIAGQAFDLTNVIPIFPLEVVDDQPTPARRGHGQATRGPGDQPLARCVRRQLPLAVAFAITIHKSQGQSLLRAVVDIGSSEQTDGQTFTALIRLRTMEGLLLEDIDLDRL 498
            N+W S GL NGA G V+ + +  G  PP LP  V V+  +Y GP + E+           L + +PI P+               Q   G  +       R+QLPL +A+A+TIHKSQG +L +A VDIG SE+T G ++ A+ R++T+  L+LE +  +RL
Sbjct: 1230 NLWASVGLCNGATGTVIDIIYELGHMPPDLPIAVIVKFDDYRGPAFIEE-----------LQSCVPICPITA-----------SAQLFEGVHE-------RQQLPLRLAYALTIHKSQGLTLAKAWVDIGKSEKTPGVSYVAISRVKTLSSLVLEPMTFERL 1362          
BLAST of mRNA_H-elongata_contig17458.4538.1 vs. uniprot
Match: A0A6S7KC61_PARCT (ATP-dependent DNA helicase PIF1 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KC61_PARCT)

HSP 1 Score: 95.9 bits (237), Expect = 1.170e-21
Identity = 55/162 (33.95%), Postives = 87/162 (53.70%), Query Frame = 1
Query:   13 NIWTSAGLANGAVGVVVHMHWPEGRAPPSLPDVVFVRMKNYSGPQYFEDTSVDIAGQAFDLTNVIPIFPLEVVDDQPTPARRGHGQATRGPGDQPLARCVRRQLPLAVAFAITIHKSQGQSLLRAVVDIGSSEQTDGQTFTALIRLRTMEGLLLEDIDLDRL 498
            N+W+S GL NGA G +V + +   + PP LP  V V  +NY GP + E+  +            +PI P+ V               T G   +      R+QLPL +A+A+TIHKSQG +L +A +D+G SE+T G ++ A+ R++T+   ++E +  +RL
Sbjct:   26 NLWSSVGLCNGATGTIVDIVFQNNQNPPDLPIAVIVNFENYRGPHFSEERPM-----------CVPICPITV------------SSQTEGGFHE------RQQLPLRLAWALTIHKSQGLTLSKAWIDVGKSERTAGVSYVAISRVKTLASCVIEPMTYERL 158          
BLAST of mRNA_H-elongata_contig17458.4538.1 vs. uniprot
Match: A0A7D9IKQ7_PARCT (ATP-dependent DNA helicase PIF1-like n=5 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IKQ7_PARCT)

HSP 1 Score: 94.7 bits (234), Expect = 1.970e-21
Identity = 54/162 (33.33%), Postives = 85/162 (52.47%), Query Frame = 1
Query:   13 NIWTSAGLANGAVGVVVHMHWPEGRAPPSLPDVVFVRMKNYSGPQYFEDTSVDIAGQAFDLTNVIPIFPLEVVDDQPTPARRGHGQATRGPGDQPLARCVRRQLPLAVAFAITIHKSQGQSLLRAVVDIGSSEQTDGQTFTALIRLRTMEGLLLEDIDLDRL 498
            N+W+S GL NGA G V+ + +     PP LP VV V  +NY GP + E+  +            IPI+P+ V                            R+QLPL +A+A+TIHKSQG +L +A +DIG SE+T G ++ A+ R++++   ++E +  ++L
Sbjct:    2 NLWSSVGLCNGATGTVIDIIYQNNHQPPDLPIVVIVEFENYRGPVFNENQPL-----------CIPIYPITVTSQTEIDFHE------------------RQQLPLRLAWALTIHKSQGLTLPKAWIDIGKSERTAGVSYVAISRVKSLASCVIEPMTYEQL 134          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17458.4538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGT1_9PHAE3.180e-5458.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K558_9PHAE9.720e-5358.93ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KDL6_9PHAE9.600e-5257.14ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5K692_9PHAE1.980e-4754.88ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A814LJU9_9BILA3.420e-2335.76Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
A0A8H5KS06_9HYPO1.090e-2236.20ATP-dependent DNA helicase n=1 Tax=Fusarium pseudo... [more]
UPI000A2A6B3A2.480e-2238.27uncharacterized protein LOC110247455 n=1 Tax=Exaip... [more]
UPI000A2A83DD9.290e-2236.42uncharacterized protein LOC110235051 n=1 Tax=Exaip... [more]
A0A6S7KC61_PARCT1.170e-2133.95ATP-dependent DNA helicase PIF1 n=1 Tax=Paramurice... [more]
A0A7D9IKQ7_PARCT1.970e-2133.33ATP-dependent DNA helicase PIF1-like n=5 Tax=Param... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17458contigH-elongata_contig17458:5577..6077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score86.7
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog38033.XP_001222929.1
EggNOG free text desc.Belongs to the helicase family
EggNOG OGs21AWX@147550,39RYU@33154,3HG3S@35718,3P64X@4751,3QU0F@4890,3UC2G@5139,COG0507@1,KOG0987@2759
COG Functional cat.L
Best tax levelChaetomiaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size501
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930012.3971756-CDS-H-elongata_contig17458:5576..60771622930012.3971756-CDS-H-elongata_contig17458:5576..6077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17458 5577..6077 +
1691679245.7247596-CDS-H-elongata_contig17458:5576..60771691679245.7247596-CDS-H-elongata_contig17458:5576..6077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17458 5577..6077 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17458.4538.1prot_H-elongata_contig17458.4538.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17458 5577..6077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17458.4538.1

>prot_H-elongata_contig17458.4538.1 ID=prot_H-elongata_contig17458.4538.1|Name=mRNA_H-elongata_contig17458.4538.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp
FVNNNIWTSAGLANGAVGVVVHMHWPEGRAPPSLPDVVFVRMKNYSGPQY
FEDTSVDIAGQAFDLTNVIPIFPLEVVDDQPTPARRGHGQATRGPGDQPL
ARCVRRQLPLAVAFAITIHKSQGQSLLRAVVDIGSSEQTDGQTFTALIRL
RTMEGLLLEDIDLDRLL
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mRNA from alignment at H-elongata_contig17458:5577..6077+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17458.4538.1 ID=mRNA_H-elongata_contig17458.4538.1|Name=mRNA_H-elongata_contig17458.4538.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=501bp|location=Sequence derived from alignment at H-elongata_contig17458:5577..6077+ (Himanthalia elongata Himel1 dioecious)
TTTGTCAACAATAACATCTGGACTTCGGCGGGCCTCGCAAACGGAGCGGT TGGTGTAGTCGTTCACATGCATTGGCCGGAGGGGCGAGCCCCCCCGTCGC TTCCCGACGTCGTCTTCGTTCGAATGAAAAACTACAGCGGCCCGCAGTAC TTTGAAGACACGTCCGTCGACATCGCGGGCCAGGCGTTTGATCTCACAAA CGTCATCCCCATCTTCCCGCTGGAGGTTGTCGACGATCAGCCTACTCCGG CCCGGCGCGGTCACGGCCAGGCAACGAGGGGCCCGGGGGACCAGCCTCTT GCACGGTGCGTTAGAAGACAACTTCCCCTCGCCGTCGCCTTTGCTATCAC CATCCACAAGAGTCAGGGGCAGTCGCTCTTGAGGGCTGTGGTAGACATCG GCAGCTCCGAGCAGACGGACGGGCAGACATTCACCGCCCTCATCCGTCTC CGGACCATGGAGGGGTTGTTATTGGAAGACATTGACCTCGACCGTCTTCT A
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Coding sequence (CDS) from alignment at H-elongata_contig17458:5577..6077+

>mRNA_H-elongata_contig17458.4538.1 ID=mRNA_H-elongata_contig17458.4538.1|Name=mRNA_H-elongata_contig17458.4538.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at H-elongata_contig17458:5577..6077+ (Himanthalia elongata Himel1 dioecious)
TTTGTCAACAATAACATCTGGACTTCGGCGGGCCTCGCAAACGGAGCGGT
TGGTGTAGTCGTTCACATGCATTGGCCGGAGGGGCGAGCCCCCCCGTCGC
TTCCCGACGTCGTCTTCGTTCGAATGAAAAACTACAGCGGCCCGCAGTAC
TTTGAAGACACGTCCGTCGACATCGCGGGCCAGGCGTTTGATCTCACAAA
CGTCATCCCCATCTTCCCGCTGGAGGTTGTCGACGATCAGCCTACTCCGG
CCCGGCGCGGTCACGGCCAGGCAACGAGGGGCCCGGGGGACCAGCCTCTT
GCACGGTGCGTTAGAAGACAACTTCCCCTCGCCGTCGCCTTTGCTATCAC
CATCCACAAGAGTCAGGGGCAGTCGCTCTTGAGGGCTGTGGTAGACATCG
GCAGCTCCGAGCAGACGGACGGGCAGACATTCACCGCCCTCATCCGTCTC
CGGACCATGGAGGGGTTGTTATTGGAAGACATTGACCTCGACCGTCTTCT
ATTTGTCAACAATAACATCTGGACTTCGGCGGGCCTCGCAAACGGAGCGG
TTGGTGTAGTCGTTCACATGCATTGGCCGGAGGGGCGAGCCCCCCCGTCG
CTTCCCGACGTCGTCTTCGTTCGAATGAAAAACTACAGCGGCCCGCAGTA
CTTTGAAGACACGTCCGTCGACATCGCGGGCCAGGCGTTTGATCTCACAA
ACGTCATCCCCATCTTCCCGCTGGAGGTTGTCGACGATCAGCCTACTCCG
GCCCGGCGCGGTCACGGCCAGGCAACGAGGGGCCCGGGGGACCAGCCTCT
TGCACGGTGCGTTAGAAGACAACTTCCCCTCGCCGTCGCCTTTGCTATCA
CCATCCACAAGAGTCAGGGGCAGTCGCTCTTGAGGGCTGTGGTAGACATC
GGCAGCTCCGAGCAGACGGACGGGCAGACATTCACCGCCCTCATCCGTCT
CCGGACCATGGAGGGGTTGTTATTGGAAGACATTGACCTCGACCGTCTTC
TA
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