mRNA_H-elongata_contig1745.4536.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1745.4536.1 vs. uniprot
Match: A0A6H5KTW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTW3_9PHAE) HSP 1 Score: 631 bits (1628), Expect = 2.810e-184 Identity = 768/2587 (29.69%), Postives = 1021/2587 (39.47%), Query Frame = 1
Query: 13 GAIVFTSIKKVLQLGHGASQAS----GISVNVPKGCDHTAKTSPRQGAGAGQASEV-GEDDGGAS---VVIGILSFESLRQGTLAVSSLFLTDETGKVRILCVPIPPPSWLGKVV--CVSRWTMTAAAKRKPTKEGTSEDPRRDNRAPGSARRAPTASRLPQLFSSCLEVSEMFKLEPPS------WTSEIL-------------------------CPSISVGDVLECIPTSGGGSNNDSNR------------GCGYGEGKNGRWSCV-RPTDKRPTLAEVTVRGALGLEAFSDRKGRGPVHLVARVVAVSPVIRVKTAPPFFMVEIEQ--PEQPEKLRNPCPQRVGQKERPPCSARQFLSDELPRSPRSTVIGETPVPVICRSSKEIAAIFDSSAEALPDFAEDLGGGVARQTVAPLTDATAADFPGESSKTSRGRTLDKDPAHPESYCGGDL-KESGICRGGDSRKREAREASSKG-----------------------KPTE-------QLMANLVLNGRRCLSWQPFLIPGKTYVFPAMGAFVLGGHLH--------KGKKMYRAFGDAEGAAETEKNRVEGVAAGGNLWTKHIVEVRSKGSGVPVHEAVRGGGCF---HSCRAVEDYAGKGPAVAPTASAD----RTTKTTIDSPGVGGGGCCGGWVATSNLNRQTHRPLADSIPALDPERRACTYEAFSETGVPTAGGEE--------------------GCGRRGHTCRC----------VMTYEGEITGLASQAG---TYVLDG-----GGGRAAINLFLQHLNCSRLGGGLRRGALIRAHNVHPVYSGRYLVGLGACLRTSIQVLRFSHLAQDASYRPLTGGTNPLPLTVDAWRYAFNATFLRREL----PRRK----------------------------------------------------------------------------------------------SSSISKPTVSGTTSLNEISQGEPSLRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAHDNVTRRHVLENGDLEWGNLACRWVFGGCLQSKSLSKRDVYAEFLNHPSGVCPVV---------GPRGGGCICGARNSSRISESDINSDGINAQRDKSGDEDDAAMEL-----------ADIEASERVSEEVIIQRADEGWHGDVV--DILDVAS---CGRQPILR-----RPQPEAVLRAASRPLAASLEVAIQHAVEIVLTTLRGKI--------------DSTNRSAAAA--GAAGA--TSTFTVRTSFGFSSSRADGILGWLACEGQSDTVDASKIGAV-------------------SRKGSRDRELRCGVEAGASAQEMETFRVMPDIALSSFGN------------------IVGTKSLLWIEDRTGEAQVVLTRR-RPQCTAVGGAALEVIHDYCS-PSSNDCGVRRGKKRGRPLRNIDDSRPTLEGEWNDDPYSASVPQFRASSGGDTSRGSRGGEGLAAFSARREPTLALIAKFSVCTEVVVLG-------ADVIAKVL--QNPTC---SAEMDNQACTGDSD--QARPSRRSATSSRTS-----------------------------------------------------------DSLRVVDGVRLLLRSYIVADENDVFILEPHTVIGGGGGADKGSTVDDGAYPLRNAPSVSPLQSVGEL--------------------------------------------------------------------STVGAVA----------------VSPMAGLSVAASRAEQDIHTLTPQAASDAQATDSGYEKRRKGTKVPARREL-----SVSEALVVRLP----------------NDAQAPGGGGVGGPWLDPSHKRESISVSGLLKEISFRLKGDGSDRRNAR-----AARPAMAEKGENTAAILSADALDEGSRESGMLAKLSAAKMQLCLTLEEGHDSVCVYLSIRSASWPVGMVPGYSNIVVDGVCRKLSVNGKSVYLAVSRAGGGTVKATSNRARAVHVTHQSLDGRKCLHPLNGRPLVQVTSL--------ALPPPPAHVALSGVLRKSHSLHCNTASDLRHTKPRHLESGNNGVSCVPGPPVILFPR--RHPVQ--AADDHQEAACSGLRYFPQTRGG--------VQQCRQGQGRGVISATRGGEPVLLETHAVDAPSTPPPISLLPKQPPE--AAVASA-------PEKPGNQAVVVTRSVHPRAP-VATSKRGNTYISGGQCASRSGNE-------SVSTKRVSAGVWATAPGADGVENETHVKPAFPRASVVPSGEATAGWARVTSRWSLGGLCRRRQLVRAKMKFASLCMIDVRFVKATTWCKSCGLIREADLALGRCLARCDAGTKWEVRWEGSVNVDDGTGQALLLLDGDDVVKLLMLSPQVRRDIETAARLHGAVS--GSRVGHNCRALASPVVVVQVPPLATARSLLAAAARRANSSRR--NISVTCTQVIKRAGSASGSSGTGGYGSVVVDVMGEGMETLTLPKVVLQGIGLQNAEARKEAYSVLARL 6126
GA ++ +VL L HGA+ + G +TS + G QA+ V G+D+G A+ VV+G+LSFESLR+G +AVSSLFL DETG + P + G+ CV R T +++ R LP F++CLEV+EM L + + C S V V + G ++D + G G G+ N WSCV R + +RPTL++V +GALGL+AF RKGRGP +VARV AVSPVIR K A PFFMVE+EQ P Q P SP +CRS +EI+A+F P + G +A A+ A GE T + ++ PA ++ + ESG G D E RE S G P+E +L A LVL G+RCLSWQ FL+PGKT+VFP +G FVLGG K YRAFGD GA + G++ L + V G VH+ G HS + P P + AD R T+T PG A R + + + T ++GG+E G G + C V+TY G ITGL SQ T+VL G INL+LQHL CS LG GLRRGA +R HNVHPVY+G L+ LGACLRT++QVLRFS L ++ASYRPLTGG PLPL V AWR +FNA FLR+EL PR++ S S S SG + ++S+ PS D +T + W CRWVFG +++ L KRDVYAEFL+HP GVC +V GP C +R ++ D + +A+ K G + + E+ +D EA ++++IQRADEGWHGD +I + C R RP PE VLRAA+R L+ SLEVA++HA +IV + + I ST A A AAGA +TFTVRT FG + RA+G+L WL A A S R + VE+ + P + LSS N + T++ LW+EDRT A+V+L RP G C+ S+ V G + + + G ++DD S Q +G D RG ++A S TLAL+ K++VCTEVVVLG +AK+ ++P+ +A + A + S Q R R +++S +T+ +++R V GVR+L+RSY+V + DV +L P ++ G S G + V+ AG ++ E H T A D Q +G + ++K + RR L SVSEAL+++L P L H+RES+ V GLL+ + FR DG R AA A+ ++G L A E M LS ++QLCLTLE D + VYL + +WPVGMVPG+ + V+GVCR+LS NGKSVYLAV+RAGGGTV+ S +L HP + R + T L ++P P + ++ + S G + P++LFPR PV A DD + + + + GG V GRGVI ATRGG VLL+TH DAP +PPP + + A+VA A PE G A R P S R NT G + A+ + S+K VS WA A V P PR+ A A +S +LG + +R LVRA F+ L ++ VRF KA TWCK+CG +RE DL++GRC RCD + WEVRWEGS N+DDGT Q L+LLDG+DVVKLL LS R DIE AAR HG VS G GH+ ALAS V LA AR+ LAAAA RA+ S R ++S +C Q R G + G GGYGS VVDVMGEGMETLTLPK+VL G GL+ +AR EAY+VLARL
Sbjct: 173 GAARTITVSQVLDLRHGATSTATRQGGDGXXXXXXXXXXXRTSTSRDTGV-QATRVDGDDEGKAAAVEVVVGVLSFESLREGDVAVSSLFLKDETGSL-----PDTVDADQGQDAHRCVGRGTRPSSSSRVS---------------------------LPS-FTACLEVTEMCHLAHEDEHNANRYNNNTFKGNGITNDDDRTVRADGFEGCVSRSCSSDKVNGVRRNVAGDGMRRSSDKGKPAEGERQGPAFGGGGGGQESNLGWSCVPRASAQRPTLSQVWAQGALGLDAFVVRKGRGPFDVVARVAAVSPVIRFKNASPFFMVEVEQAEPHQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSPPEAQRTSR----VCRSPEEISALFP-----FPTSGDHAGAPIA---------ASGAGDQGEQRSTPQAPVAEQWPAPAAAHSARNSGAESGDGVGVDG--GEGREGSGYGGATGXXXXXXXXGCRQQQNHTTLPPSERQEQQRTELTAMLVLTGQRCLSWQAFLVPGKTFVFPQVGVFVLGGSRRSKGGGSAGKPGNTYRAFGD--GARSDGRGGAGGISKATRLLVEVDARVSGPGGNSDVHDGHGGDDALALGHSHSRTQSTTSSAP---PPSGADELSARITRTMESIPGPRD------QHAEKRAGSAKRRRVTGGSSGTGADAIGRSISGCDSTDSSSSGGDERKWGDVGVGXXXXXXXXXXXGDGDXXNXGSCGGDGACGGVHVLTYNGTITGLGSQVAQTVTFVLTSLLRTFSGWWPGINLYLQHLCCSSLGAGLRRGANVRVHNVHPVYAGATLIALGACLRTTVQVLRFSPLGENASYRPLTGGPTPLPLAVHAWRQSFNAVFLRKELWAPMPRQQXXXXXXXXXXXXXXXXXXHFQQPPDGSRIGATVSTTPLGWSVSTASGTGDDHRRRTPXXXXXXXXXXXXXXXXXXXXXXXXXRATGTGLPRHPPSPSPSSLQPSGFVTAGQLSRSRPS---------PGMAGGGEWGSDGETKGGTDTAAAGADFLTGGLAMAAMAATWEERVCRWVFGPDVRAMRLPKRDVYAEFLDHPPGVCGIVDPVDLAGLVGPAHESSGCDSRGRKMPTKRD--KEEKSAKTPKRGFYREGSCEVGYGGFTSAEDGSDGEAHILSDDKMLIQRADEGWHGDSYGDEICSGGANGHCSRPSCCCSCWSCRPSPEDVLRAAARSLSESLEVAVEHAADIVPSIMSRSILCGXXXXXXXESYAGSTGGKTAVARTSAAGAMKNATFTVRTPFGSRAGRAEGLLAWLHIPRSGKREQAKGEAAPXXXXXXXXXXXXXEVSTMESPLAERPDTVAAAVESRKQPNGEKIIHGAPSLRLSSKDNSSASPRARCGSDAATNSSLASTQACLWLEDRTAWARVMLLAAPRPS-----GPXXXXXXXXCAYASARVVDVAAGPELAEVV--------SAAGRYSDDCDGGS--QRGGQTGCDQGHPGRGDADVSADS-----TLALVRKYAVCTEVVVLGPAGSPRSTKALAKIAAPKDPSSLAGTASSGSFATSAKSSVAQGRVPRSTSSSKKTASPSPTHXXXXXXXXXXXXXXXXXXXXXXASSYARDGFRPPRTTSSRGDTAEWVGYTIPCETVRAVYGVRVLMRSYLVVEAKDVSLL-PGSINGKNSRTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASGGIERNKRDEAKNQRHCLDYVNAAAGTNLGF---EHQRHGATSGA--DEQTALTGTKGKQKERDLSPRRPLAPRILSVSEALIIQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKLASGHERESMVVRGLLRYVGFRTVADGGGNGRRRQKVLPAAVTAVKDQGHGIKGDLGASTTSEVD----MFEVLSEERVQLCLTLEHAADKISVYLGVSPEAWPVGMVPGFCTVQVEGVCRRLSGNGKSVYLAVARAGGGTVRVLSLALPPPPENLPALGWSAPPHPPSVRGVSSTTRLGHEPGYLASMPVPACQATTATXXXXXXXXXXXXXXXFMNSSDDSVRSDRVGHT-PSSAPLLLFPRPRTRPVSSFARDDADHSGINTSQRIRGSSGGWGCSGHESVDPVVMASGRGVIRATRGGRVVLLDTHPADAPPSPPPNDTISCDGGDNGASVADAAAGSWACPEGNGGAAWKRARVGDGSVPPFPLSSRENTSA-GRRAATVPVRDLGMDLIPKASSKEVS--TWAELTLAGQVSEPVLRVP--PRSVSQQPAAMEAPGATSSSSSTLGAMFKRGILVRATTNFSCLSVVGVRFAKAATWCKNCGPVREKDLSMGRCWGRCDVSSNWEVRWEGSANIDDGTAQGLVLLDGEDVVKLLKLSTIARDDIEEAARRHGPVSFSGQSGGHSNSALASAVGAAPPTALAQARAALAAAAGRASCSSRAGHVSASCVQAFPRGGGSRG----GGYGSAVVDVMGEGMETLTLPKLVLHGSGLEVVDARGEAYAVLARL 2643
BLAST of mRNA_H-elongata_contig1745.4536.1 vs. uniprot
Match: D7G4W4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4W4_ECTSI) HSP 1 Score: 229 bits (585), Expect = 5.670e-64 Identity = 145/278 (52.16%), Postives = 174/278 (62.59%), Query Frame = 1
Query: 5305 VSTKRVSAGVWATAPGADGVENETHVKPAFPRASVVPSGEATAGWARVTSRWSLGGLCRRRQLVRAKMKFASLCMIDVRFVKATTWCKSCGLIREADLALGRCLARCDAGTKWEVRWEGSVNVDDGTGQALLLLDGDDVVKLLMLSPQVRRDIETAARLHGAVS--GSRVGHNCRALASPVVVVQVPPLATARSLLAAAARRANSSRR--NISVTCTQVIKRAGSASGSSGTGGYGSVVVDVMGEGMETLTLPKVVLQGIGLQNAEARKEAYSVLARL 6126
S+K VS T PG + V A PR+ A A +S +LG + + LVRA F+ L ++ VRF KA TWCK+CG +RE DL+ GRC RCD + WEVRWEGS N+DDGT QAL+LLDG+DVVKLL +S R IE AAR HG VS G GH+ ALAS V P LA AR+ LAAAA RA+ S R ++S +C Q R G + G GGYGS VVDVMGEGMETLTLPK+VLQG GL+ +AR EAY+VLARL
Sbjct: 7 ASSKEVSTWAEQTLPG----QVSEPVLRAPPRSVSQQPAAMEAPGATSSSSPTLGTMFKHGILVRATTNFSCLSVVCVRFAKAATWCKNCGPVREKDLSFGRCWGRCDVSSNWEVRWEGSANIDDGTAQALVLLDGEDVVKLLKISTIARNGIEEAARRHGPVSFSGQSGGHSNSALASAVGPAPPPALAQARAALAAAAGRASCSSRAGHVSASCVQTFPRGGGSRG----GGYGSAVVDVMGEGMETLTLPKLVLQGSGLEVVDARGEAYAVLARL 276
BLAST of mRNA_H-elongata_contig1745.4536.1 vs. uniprot
Match: D7G4W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4W5_ECTSI) HSP 1 Score: 152 bits (384), Expect = 1.690e-33 Identity = 248/919 (26.99%), Postives = 340/919 (37.00%), Query Frame = 1
Query: 1933 QAGTYVLDGGGGR----AAINLFLQHLNCSRLGGGLRRGALIRAHNVHPVYSGRYLVGLGACLRTSIQVLRFSHLAQDASYRPLTGGTNPLPLTVDAWRYAFNATFLRRELPRRKSSSISKPTVSGTTSLNEISQGEPSLRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAHDNVTRRHVLENGDLEWGNLACRWVFGGCLQSKSLSKRDVYAEFLNHPSGVCPV---------VGPRGGGCICGARNSSRISESDINSD-------GINAQRDKSGDEDDA--AMELADIEASERVSEEVIIQRADEGWHGDVVDILDVAS------CGRQPILR-----RPQPEAVLRAASRPLAASLEVAIQHAVEIVLTTLRGKIDSTNRSAAAAGAAGATSTFTVRTSFGFSSSRADGILGWLACEGQSDTVDASKIGAVS--RKGSRDRELRCGVEAGASAQEMETFRVMPDIALSSFGNIVGTKSLLWIEDRTGEAQVVLTRRRPQCTAVGGAALEVIHDYCSPSSNDCGVRRGKKRGRPLRNIDDSRPTLEGEWNDDPYSASVPQFRASSGGDTSRGSRGGEGLAAFSARREPTLALIAKFSVCTEVVVLGADVIAKVLQ-NPTCSAEMDNQACTGDSDQA---------------------------------------------------------RPSRRSATSSRTSD---------SLRVVDGVRLLLRSYIVADENDVFILEPHTVIGGGGGADKGSTVDDGAYPLRNAPSVSPLQSVGELSTVGAVAVSPMAGLSVAASRAEQDIHTLTPQAASDAQATDSGYEKRRKGTKVPARREL-----SVSEALVVRLPNDAQAPGGGGV----------------GGPWLDPSHKRESISVSGLLKEISFRLKGDG 4320
QAGTYV DGG GR INL+LQHL CS LG GLRRGA +R HNVHPVY+G L+GLGACLRT++Q SG + ++S+ S R XXXXX A +V V + W CRWVFG +++ L KRDVYAEFLNHP GVC + VGP CG+ + ++ D + G + G + A + +D EA ++++IQRADEGWHGD + ++ S C R RP PE VLRAA+RPL+ SLE E R TN S SR+D + A E + I V R S+D G S D A +S ++ ++ LW+EDRT A+VVL P+ ++ GA V + S D V G + + D +G+ Q +G D RG G++A + TLAL+ K++VCTEVVVLG + + + T SA D + G + RP R +++ T++ ++R VDGVR L+RSY+V + DV +L P + G + V+ AG ++ E H T + D Q SG ++K + RR L SVSEAL+V+L GGP L H+RES+ V GLL+++ FR DG
Sbjct: 26 QAGTYVFDGGNGRDRDRPGINLYLQHLCCSSLGAGLRRGANVRVHNVHPVYAGATLIGLGACLRTTVQ-------------------------------------------------------PSGLVTAGQLSRSRSSQRMAGGGXXXXXGEKMGGTDTA----------AAGADVLTWGV--SMAATWEERVCRWVFGQDMRAMRLRKRDVYAEFLNHPPGVCGIIDPVDLVDLVGPAQDSSGCGSCRRNMPTKRDQEEERPKTPKRGFYREGGYEGXXSGSTSAEDGSDGEAHILSDDDMLIQRADEGWHGDSHED-EICSGGANGHCSRPSCCCSCSSCRPSPEEVLRAAARPLSESLEWRXXX-XEPRPFNRRKDCHGTNIS-----------------------SRSDEERHFHAVESRKQPSGEKSIHGVPSLRPSSKDNSSASPRARGGS-----------DAATNS--SLASNQACLWLEDRTAWARVVLLAA-PRPSSPSGATGAVGCAHASTRVVDVAV--GPELAEVVSGADRHSDDFDGD----------SQRGGQTGCDQGHPGRGDAGVSA-----DATLALVRKYAVCTEVVVLGPTGSPRSTKASATISALKDPSSLAGAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSYPRYGFRPPRTTSSPGDTAEGVGYTIPCETVRAVDGVRFLMRSYLVVEAKDVSLL-PRSSNGKNSRTXXXXXXXXXXXXXXXXGIERNKRDEATNQRHCLDYVNAAAGTNLGF---EHQHHGAT--SGEDEQTALSGTTGKQKERDLSPRRPLVPRILSVSEALIVQLAAAGAXXXXXXXXXXXXXXXXXXXXXXPGGPKLASGHERESMVVRGLLRDVGFRTVADG 815 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1745.4536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1745.4536.1 >prot_H-elongata_contig1745.4536.1 ID=prot_H-elongata_contig1745.4536.1|Name=mRNA_H-elongata_contig1745.4536.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=2050bp LSTRGAIVFTSIKKVLQLGHGASQASGISVNVPKGCDHTAKTSPRQGAGAback to top mRNA from alignment at H-elongata_contig1745:826..14678+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1745.4536.1 ID=mRNA_H-elongata_contig1745.4536.1|Name=mRNA_H-elongata_contig1745.4536.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=13853bp|location=Sequence derived from alignment at H-elongata_contig1745:826..14678+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1745:826..14678+ >mRNA_H-elongata_contig1745.4536.1 ID=mRNA_H-elongata_contig1745.4536.1|Name=mRNA_H-elongata_contig1745.4536.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=12300bp|location=Sequence derived from alignment at H-elongata_contig1745:826..14678+ (Himanthalia elongata Himel1 dioecious)back to top |