mRNA_H-elongata_contig174233.4529.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig174233.4529.1
Unique NamemRNA_H-elongata_contig174233.4529.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig174233.4529.1 vs. uniprot
Match: A0A6H5K8A3_9PHAE (N-acetyltransferase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8A3_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 4.850e-22
Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:    1 LQAYVDKVAVTEPGVKRVCLISKAGLLGMYASCGFSMKGLSQVALGKDPWFEMSID 168
            L+AYV+ VA+T+PGV+RVCLI+KAGLLGMYASCGF++KGLS V  GKDPWFEM ID
Sbjct:   75 LKAYVENVALTQPGVRRVCLIAKAGLLGMYASCGFTLKGLSPVVHGKDPWFEMRID 130
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BLAST of mRNA_H-elongata_contig174233.4529.1 vs. uniprot
Match: A0A0G4ELI9_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ELI9_VITBC)

HSP 1 Score: 64.3 bits (155), Expect = 1.240e-10
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:   10 YVDKVAVTEPGVKRVCLISKAGLLGMYASCGFSMKGLSQVALGKDPWFEMSID 168
            Y+  +++ +P ++ V LISKA LL  Y SCGF+++GLS V LGKD WF+MS+D
Sbjct:  356 YIKLMSLYDPSLQHVLLISKAPLLRFYRSCGFTVEGLSSVELGKDSWFQMSMD 408
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BLAST of mRNA_H-elongata_contig174233.4529.1 vs. uniprot
Match: A0A167GKL5_CALVF (Acyl-CoA N-acyltransferase n=1 Tax=Calocera viscosa (strain TUFC12733) TaxID=1330018 RepID=A0A167GKL5_CALVF)

HSP 1 Score: 48.5 bits (114), Expect = 4.420e-5
Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:    1 LQAYVDKVAVTEPG-VKRVCLISKAGLLGMYASCGFSMKGLSQVALGKDPWFEMSID 168
            L+ Y  +    + G VKR+ L+S+A L G+YA  GFS  G S V  GK+ W++M +D
Sbjct:  118 LEEYAKRARQGQMGDVKRIALLSRADLRGLYAQAGFSELGESAVQHGKEKWYDMVLD 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig174233.4529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K8A3_9PHAE4.850e-2276.79N-acetyltransferase domain-containing protein n=2 ... [more]
A0A0G4ELI9_VITBC1.240e-1052.83Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A167GKL5_CALVF4.420e-542.11Acyl-CoA N-acyltransferase n=1 Tax=Calocera viscos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig174233contigH-elongata_contig174233:815..982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue1.9e-17
Seed eggNOG ortholog2880.D7G2Q8
Preferred nameAANAT
KEGG rclassRC00004,RC00096
KEGG koko:K00669,ko:K19952
KEGG ReactionR02911
KEGG Pathwayko00380,ko01100,map00380,map01100
KEGG ModuleM00037
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004059,GO:0004060,GO:0004145,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006325,GO:0006464,GO:0006473,GO:0006474,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0006996,GO:0007623,GO:0008080,GO:0008150,GO:0008152,GO:0009058,GO:0009308,GO:0009309,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009648,GO:0009649,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0010243,GO:0010467,GO:0010817,GO:0014070,GO:0014074,GO:0016043,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0018130,GO:0019438,GO:0019538,GO:0030186,GO:0030187,GO:0031365,GO:0031960,GO:0032868,GO:0033993,GO:0034097,GO:0034641,GO:0034644,GO:0034694,GO:0034695,GO:0034754,GO:0036211,GO:0042221,GO:0042401,GO:0042430,GO:0042435,GO:0042445,GO:0042446,GO:0042752,GO:0043153,GO:0043170,GO:0043412,GO:0043434,GO:0043543,GO:0043603,GO:0043604,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046483,GO:0046683,GO:0046688,GO:0048471,GO:0048511,GO:0048545,GO:0050789,GO:0050896,GO:0051276,GO:0051384,GO:0051385,GO:0051412,GO:0051591,GO:0051592,GO:0051604,GO:0051716,GO:0065007,GO:0065008,GO:0070141,GO:0070542,GO:0070887,GO:0071214,GO:0071310,GO:0071320,GO:0071407,GO:0071417,GO:0071478,GO:0071482,GO:0071492,GO:0071495,GO:0071704,GO:0071840,GO:0071889,GO:0097305,GO:0104004,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901654,GO:1901698,GO:1901699,GO:1901700,GO:1901701
EggNOG free text desc.aralkylamine N-acetyltransferase activity
EggNOG OGsCOG0384@1,COG0454@1,KOG3033@2759,KOG4144@2759
EC2.3.1.87
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930011.309425-CDS-H-elongata_contig174233:814..9821622930011.309425-CDS-H-elongata_contig174233:814..982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174233 815..982 -
1691679245.2658954-CDS-H-elongata_contig174233:814..9821691679245.2658954-CDS-H-elongata_contig174233:814..982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174233 815..982 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig174233.4529.1prot_H-elongata_contig174233.4529.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig174233 815..982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig174233.4529.1

>prot_H-elongata_contig174233.4529.1 ID=prot_H-elongata_contig174233.4529.1|Name=mRNA_H-elongata_contig174233.4529.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
LQAYVDKVAVTEPGVKRVCLISKAGLLGMYASCGFSMKGLSQVALGKDPW
FEMSID
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mRNA from alignment at H-elongata_contig174233:815..982-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig174233.4529.1 ID=mRNA_H-elongata_contig174233.4529.1|Name=mRNA_H-elongata_contig174233.4529.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig174233:815..982- (Himanthalia elongata Himel1 dioecious)
CTGCAGGCATACGTAGACAAAGTTGCCGTGACCGAGCCGGGGGTGAAGCG
CGTGTGCCTGATCTCGAAAGCGGGTCTGCTCGGGATGTACGCCTCCTGCG
GATTTTCCATGAAAGGACTTAGCCAGGTCGCGCTAGGGAAAGATCCCTGG
TTCGAGATGAGCATCGAT
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Coding sequence (CDS) from alignment at H-elongata_contig174233:815..982-

>mRNA_H-elongata_contig174233.4529.1 ID=mRNA_H-elongata_contig174233.4529.1|Name=mRNA_H-elongata_contig174233.4529.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig174233:815..982- (Himanthalia elongata Himel1 dioecious)
CTGCAGGCATACGTAGACAAAGTTGCCGTGACCGAGCCGGGGGTGAAGCG
CGTGTGCCTGATCTCGAAAGCGGGTCTGCTCGGGATGTACGCCTCCTGCG
GATTTTCCATGAAAGGACTTAGCCAGGTCGCGCTAGGGAAAGATCCCTGG
TTCGAGATGAGCATCGATCTGCAGGCATACGTAGACAAAGTTGCCGTGAC
CGAGCCGGGGGTGAAGCGCGTGTGCCTGATCTCGAAAGCGGGTCTGCTCG
GGATGTACGCCTCCTGCGGATTTTCCATGAAAGGACTTAGCCAGGTCGCG
CTAGGGAAAGATCCCTGGTTCGAGATGAGCATCGAT
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