mRNA_H-elongata_contig17418.4527.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17418.4527.1 vs. uniprot
Match: D7G7F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F4_ECTSI) HSP 1 Score: 366 bits (939), Expect = 1.800e-113 Identity = 190/324 (58.64%), Postives = 230/324 (70.99%), Query Frame = 1
Query: 4 DANETKSKLLGGYLRARLLENIDSPEPAKELMKRSFRHLHRGQGHILTLDEFKEGLANTFGLLIPRQLVHATFEMFDTEPRTWQLDFDEFCHWLETGKRSLNRHGV-SADFDPNKGSPSKPEEIQGRKPRSHYTAGAFQLGAKTVDDKGMSFYQNDRATLKAHLLKYKDRLRKTTGLTEAQKSVLDQLLLEKIKPKRETSFSGTETFNGLEKFNAFARGSDCVTWDGFKKEVTTLLPHLTEESEVREAFSRMDYNGDGVVDLTDFLMWEERMQEGRGKTDFW---QEQHLETIKLAKHRASNILVPEDHDGSTFFARLIREKAK 963
D NETKSKLLGGYLR LL NI EPAKEL+KRSFRHLHRGQGH+LT DEFKEGL+NTFG LIP QL+ ATF++FDTEPRTWQLDFDEFCHWL+TG+R LN HGV N P++ + RKPRS+ T+G F K + MS Q DRA LKAHL+K++ ++ K GLTEAQKS++D +L++KIK + K+VT +LPHL EESE+R+AFSRMD+NGDGVVDLTDFLMWEERMQEGRG TDF+ +E HLE IKLA+ +ASN+LVP+D+DGST+ A+L RE A+
Sbjct: 133 DTNETKSKLLGGYLRDHLLANITCNEPAKELVKRSFRHLHRGQGHVLTFDEFKEGLSNTFGALIPLQLIQATFDIFDTEPRTWQLDFDEFCHWLDTGERVLNSHGVMKKPVKTNSAPPAEGAPPKARKPRSNDTSGEFNSSIKDCNGVSMSMEQADRAQLKAHLMKHRKKIHKPGGLTEAQKSIVDHILMDKIKAR---------------------------------KKVTGMLPHLHEESEIRDAFSRMDHNGDGVVDLTDFLMWEERMQEGRGNTDFFALQEEDHLEQIKLARSKASNLLVPDDYDGSTYHAKLSREIAQ 423
BLAST of mRNA_H-elongata_contig17418.4527.1 vs. uniprot
Match: A0A6H5JR82_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR82_9PHAE) HSP 1 Score: 204 bits (519), Expect = 1.100e-59 Identity = 105/166 (63.25%), Postives = 120/166 (72.29%), Query Frame = 1
Query: 4 DANETKSKLLGGYLRARLLENIDSPEPAKELMKRSFRHLHRGQGHILTLDEFKEGLANTFGLLIPRQLVHATFEMFDTEPRTWQLDFDEFCHWLETGKRSLNRHGV------SADFDPNKGSPSKPEEIQGRKPRSHYTAGAFQLGAKTVDDKGMSFYQNDRATLK 483
D NET SKLLGGYLR LL+NI EPAKEL+KRSFRHLHRGQGH+LT DEFKEGL+NTFG LIP QL+ ATF++FDTEPRTWQLDFDEFCHWL+TG+R LN HGV + P +G+P K RKPRS+ T+G F K + MS Q DRA LK
Sbjct: 147 DINETMSKLLGGYLREHLLDNITCNEPAKELVKRSFRHLHRGQGHLLTFDEFKEGLSNTFGALIPLQLIQATFDIFDTEPRTWQLDFDEFCHWLDTGERVLNSHGVMKKPVKTDSAPPAEGAPPK-----ARKPRSNDTSGEFNSSIKDCNGVSMSMEQADRAQLK 307
BLAST of mRNA_H-elongata_contig17418.4527.1 vs. uniprot
Match: A0A836C9J2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9J2_9STRA) HSP 1 Score: 201 bits (512), Expect = 1.920e-54 Identity = 117/287 (40.77%), Postives = 160/287 (55.75%), Query Frame = 1
Query: 133 GHILTLDEFKEGLANTFGLLIPRQLVHATFEMFDTEPRTWQLDFDEFCHWLETGKRSLNRHGVSADFDPNKGSPSKPEEIQGRKPRSHYTAGAFQLGAKTVDDKGMSFYQNDRATLKAHLLKYKDRLRKTTGLTEAQKSVLDQLLLEKIKPKRETSFSGTETFNGLEKFNAFARG--SDCVTWDGFKKEVTTLLPHLTEESEVREAFSRMDYNGDGVVDLTDFLMWEERMQEGRG------KTDFW---QEQHLETIKLAKHRASNILVPEDHDGSTFFARLIREKA 960
GH+LT +EFK+GL FG + +V ATF++FDT PRTWQLDFDEFC WL+TGKR Q G + D+ +S Q +R LKAHLLK+KDRL LT+AQK ++D +LLE+IK + F+ L F +RG S + W+ F+ E+ TL+ HLT+ EV F RMD NGDG VDL+DF++W E++ GR D+W +E+HL +K + +N LVP+D+DGST+ ARL R+K+
Sbjct: 212 GHVLTFEEFKDGLGQAFGGQLHPDIVRATFDLFDTVPRTWQLDFDEFCAWLDTGKRGAQXXXXXXXXXXX----XXXXXXXXXXXXXXXXXXXQQHGRR---DRRLSAEQLEREQLKAHLLKHKDRLH-APCLTDAQKGLIDIMLLERIKKHAKAGGGEGSNFDTLSAFRKLSRGAPSGKLQWEAFRAEMATLMKHLTDGDEVLGVFKRMDNNGDGAVDLSDFMVWVEKVSSGRSIASGQNPQDYWALEEEEHLRQLKDKRLMCTNPLVPDDYDGSTWIARLNRQKS 490
BLAST of mRNA_H-elongata_contig17418.4527.1 vs. uniprot
Match: A0A6H5JXC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC8_9PHAE) HSP 1 Score: 139 bits (349), Expect = 7.640e-33 Identity = 73/135 (54.07%), Postives = 89/135 (65.93%), Query Frame = 1
Query: 655 GSDCVTWDGFKKEV-----------------------------TTLLPHLTEESEVREAFSRMDYNGDGVVDLTDFLMWEERMQEGRGKTDFW---QEQHLETIKLAKHRASNILVPEDHDGSTFFARLIREKAK 963
G+D + W FKKEV T +LPHL EESE+R+AFSRMD+NGDGVVDLTDFLMWEERMQEGRG TDF+ +E HLE IKLA+ +A N+LVP+D+DGST+ A+L RE A+
Sbjct: 7 GNDSMAWPAFKKEVGSFERNGIEPLRTHELLPTRFRIQHPPKVTGMLPHLHEESEIRDAFSRMDHNGDGVVDLTDFLMWEERMQEGRGNTDFFALQEEDHLEQIKLARSKAFNLLVPDDYDGSTYHAKLSREIAQ 141 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17418.4527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17418.4527.1 >prot_H-elongata_contig17418.4527.1 ID=prot_H-elongata_contig17418.4527.1|Name=mRNA_H-elongata_contig17418.4527.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=324bp RDANETKSKLLGGYLRARLLENIDSPEPAKELMKRSFRHLHRGQGHILTLback to top mRNA from alignment at H-elongata_contig17418:3920..7369+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17418.4527.1 ID=mRNA_H-elongata_contig17418.4527.1|Name=mRNA_H-elongata_contig17418.4527.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3450bp|location=Sequence derived from alignment at H-elongata_contig17418:3920..7369+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17418:3920..7369+ >mRNA_H-elongata_contig17418.4527.1 ID=mRNA_H-elongata_contig17418.4527.1|Name=mRNA_H-elongata_contig17418.4527.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1944bp|location=Sequence derived from alignment at H-elongata_contig17418:3920..7369+ (Himanthalia elongata Himel1 dioecious)back to top |