mRNA_H-elongata_contig174054.4521.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig174054.4521.1
Unique NamemRNA_H-elongata_contig174054.4521.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig174054.4521.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 4.250e-13
Identity = 44/103 (42.72%), Postives = 56/103 (54.37%), Query Frame = -1 
Query:  294 SLGGNKFVMLCIDEFTRFKMARFLKHKSDATNALRDIINDYFAPE-GLEMGIIFTGGGGK*HAQFLSFLSK------LAPPYTPQYNGVVERALGLLRDKTLA 581
            S+GGN + ++  D+ TR+    FLKHKSDA  A    + DY A     E+ +  T GGG+   QF     +        PP TP+YNGV ERALGLL D  LA
Sbjct:    5 SIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEPYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTPKYNGVAERALGLLADSALA 107
[Close]
BLAST of mRNA_H-elongata_contig174054.4521.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 7.420e-13
Identity = 44/103 (42.72%), Postives = 56/103 (54.37%), Query Frame = -1 
Query:  294 SLGGNKFVMLCIDEFTRFKMARFLKHKSDATNALRDIINDYFAPE-GLEMGIIFTGGGGK*HAQFLSFLSK------LAPPYTPQYNGVVERALGLLRDKTLA 581
            S+GGN + ++  D+ TR+    FLKHKSDA  A    + DY A     E+ +  T GGG+   QF     +        PP TP+YNGV ERALGLL D  LA
Sbjct:  209 SIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALA 311
[Close]
BLAST of mRNA_H-elongata_contig174054.4521.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.300e-12
Identity = 43/104 (41.35%), Postives = 59/104 (56.73%), Query Frame = -1 
Query:  294 SLGGNKFVMLCIDEFTRFKMARFLKHKSDATNALRDIINDYFAPEGL--EMGIIFTGGGGK*HAQFLSFLSK------LAPPYTPQYNGVVERALGLLRDKTLA 581
            S+GGN + ++  D+F+R+    FLKHKSDA       + DY   +G+  E+ I  T GGG+   QF     +        PP+TP+YNGV ERALGL+ D  LA
Sbjct:   36 SIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALA 138
[Close]
BLAST of mRNA_H-elongata_contig174054.4521.1 vs. uniprot
Match: A0A6H5JJX1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJX1_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.310e-11
Identity = 42/103 (40.78%), Postives = 57/103 (55.34%), Query Frame = -1 
Query:  294 LGGNKFVMLCIDEFTRFKMARFLKHKSDATNALRDIINDYFAPEGL--EMGIIFTGGGGK*HAQFLSFLSK------LAPPYTPQYNGVVERALGLLRDKTLA 578
            +GGN + ++  D+F+R+    FLKHKSDA       + D    +G+  E+ I  T GGGK   QF     +        PP+TP+YNGV ERALGL+ D  LA
Sbjct:    6 IGGNWYTLISRDDFSRWTRVFFLKHKSDAAVGFEKFLGDD-RTKGVPCEVYIAGTSGGGKFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLITDAALA 107
[Close]
BLAST of mRNA_H-elongata_contig174054.4521.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 4.190e-11
Identity = 42/104 (40.38%), Postives = 56/104 (53.85%), Query Frame = -1 
Query:  294 SLGGNKFVMLCIDEFTRFKMARFLKHKSDATNALRDIINDYFAPEGL--EMGIIFTGGGGK*HAQFLSFLSK------LAPPYTPQYNGVVERALGLLRDKTLA 581
            S+GGN + ++  D+F+R+    FLKHKSDA       + DY    G+  E  I    GGG+   QF     +        PP+TP+YNGV ERALGL+ D  LA
Sbjct:  715 SIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTNGVPCEDFIARADGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLITDAALA 817
[Close]
BLAST of mRNA_H-elongata_contig174054.4521.1 vs. uniprot
Match: A0A6H5JZ88_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ88_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.150e-10
Identity = 40/103 (38.83%), Postives = 55/103 (53.40%), Query Frame = -1 
Query:  294 SLGGNKFVMLCIDEFTRFKMARFLKHKSDATNALRDIINDYFAPEG-LEMGIIFTGGGGK*HAQFLSFLSK------LAPPYTPQYNGVVERALGLLRDKTLA 581
            S+GG+ + ++  D+F+R+    FLKHKSDA       + DY       E+ I  T GGG+   QF     +        PP+T +YNGV ERALGL+ D  LA
Sbjct:  209 SIGGSWYTLIIRDDFSRWTRDFFLKHKSDAAVGFEKFLADYRTKGAPCEVHIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTQKYNGVAERALGLITDAALA 311
[Close]
BLAST of mRNA_H-elongata_contig174054.4521.1 vs. uniprot
Match: A0A6H5K2T3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T3_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 7.100e-10
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = -1 
Query:  294 SLGGNKFVMLCIDEFTRFKMARFLKHKSDATNALRDIINDYFAPEGL--EMGIIFTGGGGK*HAQFLSFL------SKLAPPYTPQYNGVVERALGLLRDKTLA 581
            S+ GN + ++   +F+R+  A  LKHKSDA       + DY   +G+  ++ I+ T GGG+   QF           +  PP+TP+YNGV ERALGL+ D  LA
Sbjct:   36 SIVGNWYTLIIRVDFSRWTRAFLLKHKSDAAVGFEKFLADY-RTKGVPCKVYIVRTDGGGEFQGQFAEVCRTHGIKQEFTPPHTPKYNGVAERALGLITDAALA 138
[Close]
BLAST of mRNA_H-elongata_contig174054.4521.1 vs. uniprot
Match: A0A6H5K293_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K293_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 5.150e-9
Identity = 41/109 (37.61%), Postives = 56/109 (51.38%), Query Frame = -1 
Query:  294 SLGGNKFVMLCIDEFTRFKMARFLKHKSDATNALRDIINDYFAPEGL--EMGIIFTGGGGK*HAQFLS-----------FLSKLAPPYTPQYNGVVERALGLLRDKTLA 581
            S+GGN + ++  D+F+R+    FLKHKS A         D+   +G+  E+ I  T GGG+   QF                +  PP TP+YNGV ERALGL+ D  LA
Sbjct:   36 SIGGNWYTLIIRDDFSRWTRVFFLKHKSGAAVGFEKFPADH-RTKGVPREVYIARTDGGGEFQGQFAEGQFAEVCRRHGIKQEFTPPNTPKYNGVAERALGLITDAALA 143
[Close]
BLAST of mRNA_H-elongata_contig174054.4521.1 vs. uniprot
Match: A0A2N5U631_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5U631_9BASI)

HSP 1 Score: 62.8 bits (151), Expect = 4.400e-8
Identity = 40/105 (38.10%), Postives = 56/105 (53.33%), Query Frame = -1 
Query:  288 SLGGNKFVMLCIDEFTRFKMARFLKHKSDATNALRDIINDYFAPEGLEMGIIFTGGGGK*HAQFLS-FLSK------LAPPYTPQYNGVVERALGLLRDKTLALL 581
            S GG ++ +  +D+ T F   + LK KSDAT+A+    + Y    G  M  + T GGG+     L   L+K      +APPYTPQ+NGV ERA   + D T  +L
Sbjct:  655 SNGGGRYFLTLVDQHTGFIHVKVLKEKSDATSAIIQFKSLYEKQTGNAMKKLVTDGGGEFCNNTLGEILAKEGIQHNIAPPYTPQHNGVAERANRTIIDMTRCIL 759
[Close]
BLAST of mRNA_H-elongata_contig174054.4521.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 6.310e-8
Identity = 36/105 (34.29%), Postives = 53/105 (50.48%), Query Frame = -1 
Query:  294 SLGGNKFVMLCIDEFTRFKMARFLKHKSDATNALRDII---------NDYFAPEGLEMGIIFTGGGGK*HAQFLSFLSKLAPPYTPQYNGVVERALGLLRDKTLA 581
            SLGG  + ++  D++TR+    FLKHKSDA  A    +         +D         G  F G  G+   ++     +  P ++P+YNGV ERALGL++D  LA
Sbjct:  748 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYC-IKQEFTPAHSPEYNGVAERALGLIKDAALA 851
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig174054.4521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKB4_9PHAE4.250e-1342.72Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LL52_9PHAE7.420e-1342.72Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KAM7_9PHAE1.300e-1241.35Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJX1_9PHAE1.310e-1140.78Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JAQ2_9PHAE4.190e-1140.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ88_9PHAE1.150e-1038.83Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K2T3_9PHAE7.100e-1038.46Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K293_9PHAE5.150e-937.61Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N5U631_9BASI4.400e-838.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JTI6_9PHAE6.310e-834.29Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig174054contigH-elongata_contig174054:21..625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size587
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig174054.4521.1prot_H-elongata_contig174054.4521.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig174054 168..500 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930010.508692-UTR-H-elongata_contig174054:20..1671622930010.508692-UTR-H-elongata_contig174054:20..167Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig174054 21..167 +
1691679244.8788304-UTR-H-elongata_contig174054:20..1671691679244.8788304-UTR-H-elongata_contig174054:20..167Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig174054 21..167 +
1622930010.5612884-UTR-H-elongata_contig174054:500..6251622930010.5612884-UTR-H-elongata_contig174054:500..625Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig174054 501..625 +
1691679244.9007626-UTR-H-elongata_contig174054:500..6251691679244.9007626-UTR-H-elongata_contig174054:500..625Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig174054 501..625 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930010.5269005-CDS-H-elongata_contig174054:167..3871622930010.5269005-CDS-H-elongata_contig174054:167..387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174054 168..387 +
1691679244.8861666-CDS-H-elongata_contig174054:167..3871691679244.8861666-CDS-H-elongata_contig174054:167..387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174054 168..387 +
1622930010.545865-CDS-H-elongata_contig174054:405..5001622930010.545865-CDS-H-elongata_contig174054:405..500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174054 406..500 +
1691679244.893482-CDS-H-elongata_contig174054:405..5001691679244.893482-CDS-H-elongata_contig174054:405..500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174054 406..500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig174054.4521.1

>prot_H-elongata_contig174054.4521.1 ID=prot_H-elongata_contig174054.4521.1|Name=mRNA_H-elongata_contig174054.4521.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MGGCCRMSDVGRTSAHMAWYRCRGSRRCIGSTYRMRTPSLLPSITPRSRA
KVLSRSSPRARSTTPLYWGVYGGASLLRKDRNWACHFPPPPVKMMPISRP
SGAK*
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mRNA from alignment at H-elongata_contig174054:21..625+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig174054.4521.1 ID=mRNA_H-elongata_contig174054.4521.1|Name=mRNA_H-elongata_contig174054.4521.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=605bp|location=Sequence derived from alignment at H-elongata_contig174054:21..625+ (Himanthalia elongata Himel1 dioecious)
CGGTTGATGATCTGGCTTGTGGTGAGGTCACGCACTCGGAAAGTGTCCGC
GGGTAGTCGGGGGCCAGCCCGAGCATGATGCAGCTCACCCCGCGGGGGGC
TAGTTTGTGCCCAGGCTTCGACCGTCGTAGATATCCCACGGTCCCGAATG
GGGGGATGTTGTCGAATGTCGGACGTCGGCCGTACCAGTGCTCATATGGC
GTGGTACCGCTGTCGAGGAAGTAGGAGGTGCATCGGTTCCACATATCGCA
TGCGTACGCCATCGCTCTTACCCTCCATTACACCTCGCAGCAGGGCCAAG
GTCTTGTCGCGCAGTAGCCCCAGAGCGCGCTCCACGACGCCATTGTATTG
GGGGGTATATGGGGGTGTGGACTCGGGCTTGATTCCGAGCTTACTCAGGA
AAGACAGGAACTGGGCGTGTCATTTTCCCCCGCCGCCCGTGAAGATGATG
CCCATCTCGAGGCCCTCGGGCGCGAAGTAGTCGTTGATTATGTCCCTTAA
CGCATTCGTGGCGTCGCTCTTGTGCTTGAGAAAACGGGCCATTTTGAAGC
GGGTGAACTCGTCAATGCACAGCATGACGAATTTGTTTCCTCCGAGAGAC
GTCTC
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Coding sequence (CDS) from alignment at H-elongata_contig174054:21..625+

>mRNA_H-elongata_contig174054.4521.1 ID=mRNA_H-elongata_contig174054.4521.1|Name=mRNA_H-elongata_contig174054.4521.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig174054:21..625+ (Himanthalia elongata Himel1 dioecious)
ATGGGGGGATGTTGTCGAATGTCGGACGTCGGCCGTACCAGTGCTCATAT
GGCGTGGTACCGCTGTCGAGGAAGTAGGAGGTGCATCGGTTCCACATATC
GCATGCGTACGCCATCGCTCTTACCCTCCATTACACCTCGCAGCAGGGCC
AAGGTCTTGTCGCGCAGTAGCCCCAGAGCGCGCTCCACGACGCCATTGTA
TTGGGGGGTATATGGGGGTGATGGGGGGATGTTGTCGAATGTCGGACGTC
GGCCGTACCAGTGCTCATATGGCGTGGTACCGCTGTCGAGGAAGTAGGAG
GTGCATCGGTTCCACATATCGCATGCGTACGCCATCGCTCTTACCCTCCA
TTACACCTCGCAGCAGGGCCAAGGTCTTGTCGCGCAGTAGCCCCAGAGCG
CGCTCCACGACGCCATTGTATTGGGGGGTATATGGGGGTGCGAGCTTACT
CAGGAAAGACAGGAACTGGGCGTGTCATTTTCCCCCGCCGCCCGTGAAGA
TGATGCCCATCTCGAGGCCCTCGGGCGCGAAGTAGCGAGCTTACTCAGGA
AAGACAGGAACTGGGCGTGTCATTTTCCCCCGCCGCCCGTGAAGATGATG
CCCATCTCGAGGCCCTCGGGCGCGAAGTAG
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