mRNA_H-elongata_contig17396.4518.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17396.4518.1
Unique NamemRNA_H-elongata_contig17396.4518.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17396.4518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17396contigH-elongata_contig17396:268..2577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size282
Cds size189
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17396.4518.1prot_H-elongata_contig17396.4518.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17396 331..2547 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930010.3052008-UTR-H-elongata_contig17396:267..3301622930010.3052008-UTR-H-elongata_contig17396:267..330Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17396 268..330 -
1691679244.8103473-UTR-H-elongata_contig17396:267..3301691679244.8103473-UTR-H-elongata_contig17396:267..330Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17396 268..330 -
1622930010.3642-UTR-H-elongata_contig17396:2547..25771622930010.3642-UTR-H-elongata_contig17396:2547..2577Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17396 2548..2577 -
1691679244.8480673-UTR-H-elongata_contig17396:2547..25771691679244.8480673-UTR-H-elongata_contig17396:2547..2577Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17396 2548..2577 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930010.3181655-CDS-H-elongata_contig17396:330..3371622930010.3181655-CDS-H-elongata_contig17396:330..337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17396 331..337 -
1691679244.8201756-CDS-H-elongata_contig17396:330..3371691679244.8201756-CDS-H-elongata_contig17396:330..337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17396 331..337 -
1622930010.3358233-CDS-H-elongata_contig17396:1296..14441622930010.3358233-CDS-H-elongata_contig17396:1296..1444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17396 1297..1444 -
1691679244.8294938-CDS-H-elongata_contig17396:1296..14441691679244.8294938-CDS-H-elongata_contig17396:1296..1444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17396 1297..1444 -
1622930010.3518546-CDS-H-elongata_contig17396:2513..25471622930010.3518546-CDS-H-elongata_contig17396:2513..2547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17396 2514..2547 -
1691679244.838885-CDS-H-elongata_contig17396:2513..25471691679244.838885-CDS-H-elongata_contig17396:2513..2547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17396 2514..2547 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17396.4518.1

>prot_H-elongata_contig17396.4518.1 ID=prot_H-elongata_contig17396.4518.1|Name=mRNA_H-elongata_contig17396.4518.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MGTDGRAQLFFGARCVVPEVCVAAARLNICAGTCHPSLSTARQYMRSLLP
SEMSPESTPTAL*
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mRNA from alignment at H-elongata_contig17396:268..2577-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17396.4518.1 ID=mRNA_H-elongata_contig17396.4518.1|Name=mRNA_H-elongata_contig17396.4518.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2310bp|location=Sequence derived from alignment at H-elongata_contig17396:268..2577- (Himanthalia elongata Himel1 dioecious)
CCTGTATGTACGGGAGCTCAAAAGACGAGGATGGGCACAGACGGGAGGGC
TCAACTTTTCTTCGGTCAGATCCCAACATCGATTGACCTTATGGCCAGCA
AATTATATGCAGAACTACTGCACTTACTCTTAGGCTGCCGTGAGCACGAG
CCGCTCTAATAATATTAGATGATGTCTGAGTGTTGTAACTTAGTAAATGG
AAAATAATATAATATGCGTTGCATGAGAACTCCAGACAGGGGTGCCGGAA
TCAGTCGAGCTGCTTGCTGTCCCCTGCCTGTTTGGAGGTGGCGATTCCGT
TATCTAAACGGAATCAGCGATAAATTGGGGGGAGCGTGGCGGTAAGAGGG
TTGCTGGCTGAGTCGCGCTGGTCTTCTAGCATGATTTCGTTCCATCGCAA
GTGTTTGAGATACTTGTAGCCCATCTGGATCCCCTCTTCACCTCCTGACA
ATGCTAATCCTCCAGCTAATACAACCATTAATATATTTATTTTCTCTCGC
GTGCCTGGGTTTCACGTTACATTCAAGGATTCTTATCATACGCTACTTCC
CGTGCCCACATATAAATGTCGCCATGGAAGTTGGACGATGAGAGGAGGGC
AATTGAAATAAAAAACAGAGGCTTTTTACTGGTCTCGAAAACTCAAGATA
GACGTGCAAATGAAGCAAACTTTTCCTGCCCGTATCATTAATTAATTAAG
TGGGTATGTGAAGCCTGCAAGGGAGGAGTGAAATATTATCCAATTTGGGC
GAATTAATTACAACCCCAGCTCTGTCCTCCTGAGGAGGCCCTTAAGTAAT
CTCCTCCCCCCCCCCCCACCTCCTCCTCCCCGGAAGGCTTGGGTCTGACA
TTTGTCGCGACTGAGGATCCTTGGTGATGTGCGTACCGGCGTGTCATTAA
GATGTAACCCGTGGACCTCGGTACCGCTACAAGCGGGGTTGGTCGTGTAT
AGATAGATGTACTATTATTAATATTCTTGACTGGATTGTTTCACCCTACT
TCTTCAGTTCTAAGGACGATGATGTACGCTCAATGCGTGAATCAACAACA
ACAACTAATGGCATCACATTATCGACTAATGATGTTGCGTGTTTGCTCAT
TGCTACTCGTGGATCATTTTCGCGCATTCCTAGGCGCGAGATGTGTCGTG
CCTGAAGTGTGCGTGGCGGCTGCGAGGCTCAATATTTGTGCCGGGACATG
TCATCCTTCTCTGTCAACTGCAAGGCAATATATGAGGTCTCTCCTGCCAA
GCGAAATGTCGCCTGAGTCAACACCGACCGCGTGAGTGTTACCTGTGGAC
GAGATGTATAGCTTTAGTCGCCGTGATCTACTCCGCTCGAGCTATTAGAT
TCAACCTCGAAGGCAAAACATCGGTTTGACCAAACGTTTTCTTCGTGGAC
TTTCTACTTTATATTGAATCAAAGACCCGCGAACTTGCCAAATAATACAC
AAATAAAACCCTTACTAACTACTACTACTACGATATGCCACAATAATCCA
GCTCAGCCTAAATCGGCGCAATGGATGTACGACGCGTCGGTAGAAGTCGT
CAAATTTAATGCGACCCCACGTCGGGTGATGTTTTGTCCAACCGTGGACT
GCCCAATATAGCATCAAAGAGCGATGACGCGGTCGACGAATCGCTGAAGG
ACATGTAGCATAGATAGCGTCATGAGGGAGGATACTACCCACACTACGCA
ATGCGTAAGCCTACGTCAAATATCAACAAGTTGAACAGGCATCAAACGGC
TCGACGCGATATACCCTTTTTTCGTGTCGCAATTTCACTGCCAAGTCCAC
ACTACCGTGCGCCGGTGTCGAGTGATGCGCGGCTAGACCGCGAGGTCAAA
GCGACAAACGCGCACACCTCGTGAAGGCTGGTCTCAAAAAGCGATGTTGC
AATGCACTCTCTTCGTTGTATTGACGAAGTTGTTATTCGCCATAGAGGGG
TGGATTAAAACGGCGTCCAGCACGTCCAATGCATTTCATTATTTCAAATT
TGATGCATTAAGGGCAATATGCACGAAGTCGTGATAAGTGAAGGTCAGGC
GACCAAAATTTTCATCGGTCGCCCATATCTAGACGAGTAGCGATCATCAT
ATAATAATTCGCCGTTATAAAAACTGGCTCAGCCGCATACCGGAACGGAG
AACGATATTGCTAACTACTACATCGGGACTTGGTGTCAATCCTTTAAATC
GTGGACGTTTGGGTTTCAACACATCCGCGTGTGCGTGCAGACTGTGACCG
CCCCATCACGGAAGCGCTGGAGTTGAAGATCGCTGAAATCACCGGACCGG
GTTCGCCTTA
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Coding sequence (CDS) from alignment at H-elongata_contig17396:268..2577-

>mRNA_H-elongata_contig17396.4518.1 ID=mRNA_H-elongata_contig17396.4518.1|Name=mRNA_H-elongata_contig17396.4518.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig17396:268..2577- (Himanthalia elongata Himel1 dioecious)
ATGGGCACAGACGGGAGGGCTCAACTTTTCTTCGATGGGCACAGACGGGA
GGGCTCAACTTTTCTTCGGCGCGAGATGTGTCGTGCCTGAAGTGTGCGTG
GCGGCTGCGAGGCTCAATATTTGTGCCGGGACATGTCATCCTTCTCTGTC
AACTGCAAGGCAATATATGAGGTCTCTCCTGCCAAGCGAAATGTCGCCTG
AGTCAACACCGACCGCGCGCGAGATGTGTCGTGCCTGAAGTGTGCGTGGC
GGCTGCGAGGCTCAATATTTGTGCCGGGACATGTCATCCTTCTCTGTCAA
CTGCAAGGCAATATATGAGGTCTCTCCTGCCAAGCGAAATGTCGCCTGAG
TCAACACCGACCGCACTGTGAACTGTGA
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