mRNA_H-elongata_contig17392.4517.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17392.4517.1
Unique NamemRNA_H-elongata_contig17392.4517.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17392.4517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17392contigH-elongata_contig17392:2846..3862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1017
Cds size594
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17392.4517.1prot_H-elongata_contig17392.4517.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17392 2899..3492 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930010.237421-UTR-H-elongata_contig17392:2845..28981622930010.237421-UTR-H-elongata_contig17392:2845..2898Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17392 2846..2898 +
1691679244.765533-UTR-H-elongata_contig17392:2845..28981691679244.765533-UTR-H-elongata_contig17392:2845..2898Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17392 2846..2898 +
1622930010.2684054-UTR-H-elongata_contig17392:3492..38621622930010.2684054-UTR-H-elongata_contig17392:3492..3862Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17392 3493..3862 +
1691679244.794709-UTR-H-elongata_contig17392:3492..38621691679244.794709-UTR-H-elongata_contig17392:3492..3862Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17392 3493..3862 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930010.2530198-CDS-H-elongata_contig17392:2898..34921622930010.2530198-CDS-H-elongata_contig17392:2898..3492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17392 2899..3492 +
1691679244.7816308-CDS-H-elongata_contig17392:2898..34921691679244.7816308-CDS-H-elongata_contig17392:2898..3492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17392 2899..3492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17392.4517.1

>prot_H-elongata_contig17392.4517.1 ID=prot_H-elongata_contig17392.4517.1|Name=mRNA_H-elongata_contig17392.4517.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=198bp
MHALEGMIDVASKSCSSDGSFSSLGCGVAGSKKPESCVAHEFNRMADVAY
TRCAIIGCCKRPSYGAVGRIKPEYCTEKAVNGMITVGKLDAGDGCHREKD
QDFIDSKTNGVCNGCCRRAGDDIAGSAMQEFCAESSSNGMNVSAAQDQAR
TRKRMSETTAPEVFALQREITKKVKRSGNNVGSNPERVKMEVSLSRS*
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mRNA from alignment at H-elongata_contig17392:2846..3862+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17392.4517.1 ID=mRNA_H-elongata_contig17392.4517.1|Name=mRNA_H-elongata_contig17392.4517.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1017bp|location=Sequence derived from alignment at H-elongata_contig17392:2846..3862+ (Himanthalia elongata Himel1 dioecious)
TTAAGCGTCCGAGTTATGGCGTATCCGGCAGCAAAAAGGCGGAATACTGT
GCAATGCATGCTTTGGAAGGGATGATCGACGTTGCGAGCAAGAGTTGTTC
TAGCGATGGATCATTTTCGTCACTGGGCTGTGGCGTTGCTGGTAGCAAAA
AGCCGGAGTCCTGCGTGGCGCATGAGTTTAACAGAATGGCCGACGTTGCT
TACACGAGGTGCGCTATCATTGGATGCTGCAAGCGACCGAGCTATGGCGC
TGTCGGCAGGATCAAGCCGGAGTACTGTACCGAAAAAGCTGTAAATGGGA
TGATCACCGTTGGGAAATTGGATGCCGGCGATGGATGCCATAGGGAGAAA
GATCAGGATTTTATCGATTCCAAGACTAATGGCGTCTGTAACGGATGCTG
CAGGAGAGCGGGCGACGATATTGCCGGCAGCGCGATGCAGGAGTTTTGCG
CTGAAAGTTCTTCGAATGGTATGAATGTTTCGGCTGCACAAGATCAGGCA
AGAACAAGGAAGCGAATGTCCGAGACTACTGCACCAGAAGTATTTGCTTT
GCAGAGGGAAATAACAAAAAAGGTTAAACGCTCCGGCAATAACGTTGGAT
CAAATCCAGAGAGAGTAAAAATGGAGGTGTCCCTGTCTCGATCCTAGTTA
AACATTTCTTTGAAGTTGAAAGTTGAAAAACGTCTACTGCAGACCATGCG
GGGTGTTTGGGCTCCGGGGCGCTACCATGCCTCTAGAGCGGTCTCAATTA
GTATATTGAAACAAGCAGGGGACACAAAGGTTTATTTGTTTGATCTGGGA
AGAGGCCGAAAAACTGGAGAGAGGCCAAAGTTTGTTGTTCTTGATATATT
TTTAATTTTTAATTTTTACGTATGGGCGTAATGCGAGCGCAGGGATCGGT
CCTGGTTAATCTCCACGTGGAAACAGGCTCGAATGGACACAATCACCGAT
ACTAATCCGTTATAATGACTGCATCCTTCCATTCTTCTCTTGATTCCCAC
GAGGGTGCACCCGCTAC
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Coding sequence (CDS) from alignment at H-elongata_contig17392:2846..3862+

>mRNA_H-elongata_contig17392.4517.1 ID=mRNA_H-elongata_contig17392.4517.1|Name=mRNA_H-elongata_contig17392.4517.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1188bp|location=Sequence derived from alignment at H-elongata_contig17392:2846..3862+ (Himanthalia elongata Himel1 dioecious)
ATGCATGCTTTGGAAGGGATGATCGACGTTGCGAGCAAGAGTTGTTCTAG
CGATGGATCATTTTCGTCACTGGGCTGTGGCGTTGCTGGTAGCAAAAAGC
CGGAGTCCTGCGTGGCGCATGAGTTTAACAGAATGGCCGACGTTGCTTAC
ACGAGGTGCGCTATCATTGGATGCTGCAAGCGACCGAGCTATGGCGCTGT
CGGCAGGATCAAGCCGGAGTACTGTACCGAAAAAGCTGTAAATGGGATGA
TCACCGTTGGGAAATTGGATGCCGGCGATGGATGCCATAGGGAGAAAGAT
CAGGATTTTATCGATTCCAAGACTAATGGCGTCTGTAACGGATGCTGCAG
GAGAGCGGGCGACGATATTGCCGGCAGCGCGATGCAGGAGTTTTGCGCTG
AAAGTTCTTCGAATGGTATGAATGTTTCGGCTGCACAAGATCAGGCAAGA
ACAAGGAAGCGAATGTCCGAGACTACTGCACCAGAAGTATTTGCTTTGCA
GAGGGAAATAACAAAAAAGGTTAAACGCTCCGGCAATAACGTTGGATCAA
ATCCAGAGAGAGTAAAAATGGAGGTGTCCCTGTCTCGATCCTAGATGCAT
GCTTTGGAAGGGATGATCGACGTTGCGAGCAAGAGTTGTTCTAGCGATGG
ATCATTTTCGTCACTGGGCTGTGGCGTTGCTGGTAGCAAAAAGCCGGAGT
CCTGCGTGGCGCATGAGTTTAACAGAATGGCCGACGTTGCTTACACGAGG
TGCGCTATCATTGGATGCTGCAAGCGACCGAGCTATGGCGCTGTCGGCAG
GATCAAGCCGGAGTACTGTACCGAAAAAGCTGTAAATGGGATGATCACCG
TTGGGAAATTGGATGCCGGCGATGGATGCCATAGGGAGAAAGATCAGGAT
TTTATCGATTCCAAGACTAATGGCGTCTGTAACGGATGCTGCAGGAGAGC
GGGCGACGATATTGCCGGCAGCGCGATGCAGGAGTTTTGCGCTGAAAGTT
CTTCGAATGGTATGAATGTTTCGGCTGCACAAGATCAGGCAAGAACAAGG
AAGCGAATGTCCGAGACTACTGCACCAGAAGTATTTGCTTTGCAGAGGGA
AATAACAAAAAAGGTTAAACGCTCCGGCAATAACGTTGGATCAAATCCAG
AGAGAGTAAAAATGGAGGTGTCCCTGTCTCGATCCTAG
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