mRNA_H-elongata_contig173894.4516.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig173894.4516.1
Unique NamemRNA_H-elongata_contig173894.4516.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig173894.4516.1 vs. uniprot
Match: D7FZ64_ECTSI (Long chain acyl-CoA synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ64_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 9.190e-44
Identity = 77/108 (71.30%), Postives = 88/108 (81.48%), Query Frame = 1
Query:    1 WQSLPEMWDFLAIECGDQIAVVDPIHPALGTDGERGGKVTEARLSYSEIRASVRKMAAALAVLGIQRSDCVSVFSENSYRWLIAEQGVMIAGGCNAVRGATAPVPELR 324
            W SLPEMWDFLA ECGD  A+VDP+HP    DG+R  K +E RL+YSE+R S+  MAAAL  LG+++ DCVSVFSENSYRWLIAEQG+M AGGCNAVRGATAPV ELR
Sbjct:   49 WNSLPEMWDFLAGECGDLTAIVDPVHPPDMPDGKRPPKGSETRLTYSEMRTSIGSMAAALIGLGLEKQDCVSVFSENSYRWLIAEQGIMKAGGCNAVRGATAPVAELR 156          
BLAST of mRNA_H-elongata_contig173894.4516.1 vs. uniprot
Match: A0A7S2Y1P6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1P6_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.630e-24
Identity = 52/108 (48.15%), Postives = 70/108 (64.81%), Query Frame = 1
Query:    1 WQSLPEMWDFLAIECGDQIAVVDPIHPALGTDGERGGKVTEARLSYSEIRASVRKMAAALAVLGIQRSDCVSVFSENSYRWLIAEQGVMIAGGCNAVRGATAPVPELR 324
            +  + ++WD L  EC D  A+VD IH      GE       A+ ++ E+R  +   A AL  LG+++ DCVS+FSENS+RWL+ EQ +M AGGCNAVRGATAPV EL+
Sbjct:   82 FSRITDIWDNLVKECPDNTAIVDDIH------GE------PAQYTFKELRQLIIDGAGALQSLGLEKGDCVSMFSENSHRWLVLEQAIMKAGGCNAVRGATAPVGELQ 177          
BLAST of mRNA_H-elongata_contig173894.4516.1 vs. uniprot
Match: A0A836C922_9STRA (Long-chain acyl-CoA synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C922_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.420e-22
Identity = 50/105 (47.62%), Postives = 68/105 (64.76%), Query Frame = 1
Query:   10 LPEMWDFLAIECGDQIAVVDPIHPALGTDGERGGKVTEARLSYSEIRASVRKMAAALAVLGIQRSDCVSVFSENSYRWLIAEQGVMIAGGCNAVRGATAPVPELR 324
            +P++W F+  +C  QIA+VD +H          G +T    +Y+E+R  + ++A A   LG+    CVSVFSENS RWL AEQG+M+AGGCNAVRG  APV EL+
Sbjct:   88 VPDLWTFMEKQCPSQIAIVDALH----------GGITVV-YTYAELRERIVRLAGAFQALGLAPGQCVSVFSENSNRWLTAEQGIMLAGGCNAVRGVAAPVEELQ 181          
BLAST of mRNA_H-elongata_contig173894.4516.1 vs. uniprot
Match: A0A5J4YJZ8_PORPP (Putative acyl-activating enzyme 16, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YJZ8_PORPP)

HSP 1 Score: 89.0 bits (219), Expect = 2.200e-18
Identity = 45/107 (42.06%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    4 QSLPEMWDFLAIECGDQIAVVDPIHPALGTDGERGGKVTEARLSYSEIRASVRKMAAALAVLGIQRSDCVSVFSENSYRWLIAEQGVMIAGGCNAVRGATAPVPELR 324
            +SLPE+W     + G + A++DP  P+        G  T   L+++E+ A +R  +A L  LG++R + VS+FSENS+RWLIA+Q V +AG  +AVRG  AP PE++
Sbjct:  153 ESLPELWLLAERQFGSRTAIIDPYCPS--------GNTT---LTFAELAAQIRAFSAGLRQLGLRRKETVSLFSENSHRWLIADQAVQMAGASSAVRGVAAPAPEIQ 248          
BLAST of mRNA_H-elongata_contig173894.4516.1 vs. uniprot
Match: W7TIG2_9STRA (Long-chain acyl-synthetase (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIG2_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 5.390e-17
Identity = 41/108 (37.96%), Postives = 65/108 (60.19%), Query Frame = 1
Query:    1 WQSLPEMWDFLAIECGDQIAVVDPIHPALGTDGERGGKVTEARLSYSEIRASVRKMAAALAVLGIQRSDCVSVFSENSYRWLIAEQGVMIAGGCNAVRGATAPVPELR 324
            W++LP++++ +A    + +AV D +H               A+++Y E+   +  +AA     G++   CVSVF+ENS+RWLIA+Q ++ AG CNAVRG  APV EL+
Sbjct:  121 WRTLPDVFETVASLAPEAVAVEDMVH------------TPTAKMTYGELNRQIGALAAFFQHEGLKPGQCVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQ 216          
BLAST of mRNA_H-elongata_contig173894.4516.1 vs. uniprot
Match: UPI001263198C (probable acyl-activating enzyme 16, chloroplastic n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI001263198C)

HSP 1 Score: 83.6 bits (205), Expect = 1.700e-16
Identity = 38/107 (35.51%), Postives = 65/107 (60.75%), Query Frame = 1
Query:    1 WQSLPEMWDFLAIECGDQIAVVDPIHPALGTDGERGGKVTEARLSYSEIRASVRKMAAALAVLGIQRSDCVSVFSENSYRWLIAEQGVMIAGGCNAVRGATAPVPEL 321
            WQ++P++W + A + GD++A+VDP H    +            ++Y ++   +   A  L VLG++  + +S+F++NSYRWL+A+QG+M  G  N VRG+ + V EL
Sbjct:   91 WQAVPDIWRYSAEKYGDRVALVDPYHDPPSS------------ITYKQLEQEILDFAEGLRVLGVKPEEKLSLFADNSYRWLVADQGMMATGAINVVRGSRSSVEEL 185          
BLAST of mRNA_H-elongata_contig173894.4516.1 vs. uniprot
Match: A0A1Y1ISR1_KLENI (Acyl-ACP Synthetase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ISR1_KLENI)

HSP 1 Score: 83.6 bits (205), Expect = 1.700e-16
Identity = 41/108 (37.96%), Postives = 65/108 (60.19%), Query Frame = 1
Query:    1 WQSLPEMWDFLAIECGDQIAVVDPIHPALGTDGERGGKVTEARLSYSEIRASVRKMAAALAVLGIQRSDCVSVFSENSYRWLIAEQGVMIAGGCNAVRGATAPVPELR 324
            W+ LP MW  LA + GD++A+ DP             +    +++Y E+  ++   +  L + GI+  D V +FS+NS+RW+IA+QG+M+AG  +AVRGA AP  EL+
Sbjct:  134 WEVLPAMWHTLAQKYGDRVALDDP------------HRKPHIKMTYKELEQAIVDFSEGLRLYGIKAGDRVGLFSDNSHRWIIADQGIMMAGAVDAVRGAKAPAEELK 229          
BLAST of mRNA_H-elongata_contig173894.4516.1 vs. uniprot
Match: A0A4D9CQD3_9STRA (AMP-binding domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CQD3_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.320e-16
Identity = 41/108 (37.96%), Postives = 65/108 (60.19%), Query Frame = 1
Query:    1 WQSLPEMWDFLAIECGDQIAVVDPIHPALGTDGERGGKVTEARLSYSEIRASVRKMAAALAVLGIQRSDCVSVFSENSYRWLIAEQGVMIAGGCNAVRGATAPVPELR 324
            W++LP++++ +A    + +AV D +H               A+++Y E+   +  +AA     G++   CVSVF+ENS+RWLIA+Q ++ AG CNAVRG  APV EL+
Sbjct:  121 WRTLPDVFETVASLAPEAVAVEDMVH------------TPTAKMTYGELNRQIGALAAFFQHEGLKPGQCVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQ 216          
BLAST of mRNA_H-elongata_contig173894.4516.1 vs. uniprot
Match: A0A8J7E499_9CYAN (AMP-binding protein n=1 Tax=Nodosilinea sp. LEGE 07088 TaxID=2777968 RepID=A0A8J7E499_9CYAN)

HSP 1 Score: 82.4 bits (202), Expect = 4.270e-16
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 1
Query:    4 QSLPEMWDFLAIECGDQIAVVDPIHPALGTDGERGGKVTEARLSYSEIRASVRKMAAALAVLGIQRSDCVSVFSENSYRWLIAEQGVMIAGGCNAVRGATAPVPEL 321
            Q+LPE+W  +A + GD +A+ DP    + T            L+Y ++  ++R  A+ L  +G+     V++F++NSYRW IA+QG+M AGG NAVR ATA   EL
Sbjct:   29 QALPEIWPIVAEKYGDIVALHDPHSQPVAT------------LTYRQLAEAIRTFASGLQAIGVNYQTHVALFADNSYRWFIADQGIMTAGGMNAVRSATAETEEL 122          
BLAST of mRNA_H-elongata_contig173894.4516.1 vs. uniprot
Match: A0A0G4EEM4_VITBC (AMP-binding domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EEM4_VITBC)

HSP 1 Score: 82.4 bits (202), Expect = 4.370e-16
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 1
Query:    7 SLPEMWDFLAIECGDQIAVVDPIHPALGTDGERGGKVTEARLSYSEIRASVRKMAAALAVLGIQRSDCVSVFSENSYRWLIAEQGVMIAGGCNAVRGATAPVPEL 321
            S+PEMW  L    GD+ A+ DP H   G DGE GG+     L+Y ++   +R + + LA  G+ + D V+  +ENS+RW+I +Q +M+AGG +  RGA A + EL
Sbjct:   81 SIPEMWPLLTERFGDRTALKDPYHGGEG-DGE-GGRA----LTYRQLDEEIRSLGSGLATAGLLKGDKVTFIAENSHRWIITDQAIMLAGGISIPRGAAADLKEL 179          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig173894.4516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ64_ECTSI9.190e-4471.30Long chain acyl-CoA synthetase n=1 Tax=Ectocarpus ... [more]
A0A7S2Y1P6_9STRA3.630e-2448.15Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A836C922_9STRA1.420e-2247.62Long-chain acyl-CoA synthetase n=1 Tax=Tribonema m... [more]
A0A5J4YJZ8_PORPP2.200e-1842.06Putative acyl-activating enzyme 16, chloroplastic ... [more]
W7TIG2_9STRA5.390e-1737.96Long-chain acyl-synthetase (Fragment) n=1 Tax=Nann... [more]
UPI001263198C1.700e-1635.51probable acyl-activating enzyme 16, chloroplastic ... [more]
A0A1Y1ISR1_KLENI1.700e-1637.96Acyl-ACP Synthetase n=1 Tax=Klebsormidium nitens T... [more]
A0A4D9CQD3_9STRA2.320e-1637.96AMP-binding domain-containing protein n=2 Tax=Mono... [more]
A0A8J7E499_9CYAN4.270e-1639.62AMP-binding protein n=1 Tax=Nodosilinea sp. LEGE 0... [more]
A0A0G4EEM4_VITBC4.370e-1640.95AMP-binding domain-containing protein n=2 Tax=Vitr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig173894contigH-elongata_contig173894:341..1225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.6
Seed ortholog evalue4e-34
Seed eggNOG ortholog2880.D7FZ64
Preferred nameAAE15
KEGG rclassRC00004,RC00014
KEGG koko:K01897
KEGG TC4.C.1.1
KEGG ReactionR01280
KEGG Pathwayko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920
KEGG ModuleM00086
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0008922,GO:0009058,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0009987,GO:0015645,GO:0016053,GO:0016874,GO:0016877,GO:0016878,GO:0019752,GO:0030497,GO:0031967,GO:0031975,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901576
EggNOG free text desc.decanoate-CoA ligase activity
EggNOG OGsCOG1022@1,KOG1256@2759
EC6.2.1.3
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size324
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig173894.4516.1prot_H-elongata_contig173894.4516.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig173894 341..1207 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930010.1588478-CDS-H-elongata_contig173894:340..4601622930010.1588478-CDS-H-elongata_contig173894:340..460Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173894 341..460 -
1691679244.7249281-CDS-H-elongata_contig173894:340..4601691679244.7249281-CDS-H-elongata_contig173894:340..460Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173894 341..460 -
1622930010.1738229-CDS-H-elongata_contig173894:1021..12071622930010.1738229-CDS-H-elongata_contig173894:1021..1207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173894 1022..1207 -
1691679244.7369986-CDS-H-elongata_contig173894:1021..12071691679244.7369986-CDS-H-elongata_contig173894:1021..1207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173894 1022..1207 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930010.194791-UTR-H-elongata_contig173894:1207..12251622930010.194791-UTR-H-elongata_contig173894:1207..1225Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig173894 1208..1225 -
1691679244.7511184-UTR-H-elongata_contig173894:1207..12251691679244.7511184-UTR-H-elongata_contig173894:1207..1225Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig173894 1208..1225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig173894.4516.1

>prot_H-elongata_contig173894.4516.1 ID=prot_H-elongata_contig173894.4516.1|Name=mRNA_H-elongata_contig173894.4516.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MWDFLAIECGDQIAVVDPIHPALGTDGERGGKVTEARLSYSEIRASVRKM
AAALAVLGIQRSDCVSVFSENSYRWLIAEQGVMIAGGCNAVRGATAPVPE
LR
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mRNA from alignment at H-elongata_contig173894:341..1225-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig173894.4516.1 ID=mRNA_H-elongata_contig173894.4516.1|Name=mRNA_H-elongata_contig173894.4516.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=885bp|location=Sequence derived from alignment at H-elongata_contig173894:341..1225- (Himanthalia elongata Himel1 dioecious)
TGGCAGTCTTTACCGGAGATGTGGGACTTTCTCGCGATAGAGTGCGGAGA TCAGATAGCGGTCGTCGATCCCATCCACCCGGCCCTCGGGACGGACGGGG AGAGGGGGGGCAAGGTCACCGAGGCGCGGCTAAGTTACTCGGAGATTCGG GCGAGCGTACGGAAGATGGCGGCCGCTCTCGCAGTGCTAGGCATCCAACG AAGCGTGAGGAATAATCCCCAGGAAAAGGCGACACGAAGGATTTTTTTAG GCGGAGGGGGCGGGGAGGGCGGAGGGGCAGATCTATTAATAGTAACGAAG TGGAGACTGCGAATGATCTATCGGTACGCGCCTCTTTTGAAAATTAACTG CGGTGTAACACCGGTGTGCCAAGGAGGACGGGCGAGCGTACCACCACCAC CACCACCATCACTGTTTATAGTTATAGCGCTATTCGTGCTGGTGTTGAAA AAGCAGGATGACGCGCGCCAAGGAGAGCGGTTTGGTAGGCCAGCACGGTA CAGAACGGTACGCGCTGTAGGGATGAAGGGATGCACTCCGTCCGGGGCTA CGCTGGAGCTCTCGTTCGGCCCACGGCCCACGACAAGAGCGCGCTACCCT CCCTTCTTTGCTCCTTCCCGCCCCACTCACCCACCTACCTATCCCCTCCC TATTTTCTCCTGTTTCATGAAGTGTCGTCCTCATCTCGTTTCGTCCCGCC TCGGCTCATTTCTCGTCCCGTTTTGTTTATTCTCGTCCCGTTTTGTCTGA TCTCGTCCGATCCAGGACTGTGTATCGGTATTCTCCGAGAACAGCTACCG GTGGTTGATCGCAGAGCAGGGGGTGATGATCGCCGGAGGGTGTAACGCCG TGCGAGGGGCGACCGCCCCGGTCCCAGAGCTCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig173894:341..1225-

>mRNA_H-elongata_contig173894.4516.1 ID=mRNA_H-elongata_contig173894.4516.1|Name=mRNA_H-elongata_contig173894.4516.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig173894:341..1225- (Himanthalia elongata Himel1 dioecious)
ATGTGGGACTTTCTCGCGATAGAGTGCGGAGATCAGATAGCGGTCGTCGA
TCCCATCCACCCGGCCCTCGGGACGGACGGGGAGAGGGGGGGCAAGGTCA
CCGAGGCGCGGCTAAGTTACTCGGAGATTCGGGCGAGCGTACGGAAGATG
GCGGCCGCTCTCGCAGTGCTAGGCATCCAACGAAGCATGTGGGACTTTCT
CGCGATAGAGTGCGGAGATCAGATAGCGGTCGTCGATCCCATCCACCCGG
CCCTCGGGACGGACGGGGAGAGGGGGGGCAAGGTCACCGAGGCGCGGCTA
AGTTACTCGGAGATTCGGGCGAGCGTACGGAAGATGGCGGCCGCTCTCGC
AGTGCTAGGCATCCAACGAAGCGACTGTGTATCGGTATTCTCCGAGAACA
GCTACCGGTGGTTGATCGCAGAGCAGGGGGTGATGATCGCCGGAGGGTGT
AACGCCGTGCGAGGGGCGACCGCCCCGGTCCCAGAGCTCAGGGACTGTGT
ATCGGTATTCTCCGAGAACAGCTACCGGTGGTTGATCGCAGAGCAGGGGG
TGATGATCGCCGGAGGGTGTAACGCCGTGCGAGGGGCGACCGCCCCGGTC
CCAGAGCTCAGG
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