mRNA_H-elongata_contig17388.4515.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17388.4515.1
Unique NamemRNA_H-elongata_contig17388.4515.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17388.4515.1 vs. uniprot
Match: D8LEN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN2_ECTSI)

HSP 1 Score: 458 bits (1178), Expect = 1.280e-150
Identity = 236/338 (69.82%), Postives = 272/338 (80.47%), Query Frame = 1
Query:    1 QSGISVRVRSLPTDRGYTIFNFYQNQETMRGQALIRQYRV--GFFATN--------GSSSAHELAGLAEATWSLEYEKGSTEQWARITLACVLALWLPVWLSWCYIVFYRKSDVVGFKHALHERKWLAFLGLSVALYLNPVMVIGNFVAPGSASWGLASEMLLSVGVAVFLVVALCIADGIVRDKVKKSGRGRGYKI-FYIPKIVIGGVTLLLMLTMDLMSFPSLTAWQRGSLLAVQNWPESERKTFTFMASARIAMLILWGMWMLWRIYISGSLLRQLPYVPTRYQQLSYRFFGLQAFLLGAVYVMFALWRLIDILDKDLGGNTVAAEFMLFIKTRQ 981
            Q  IS RVRSLP +RGYT+FNFYQNQET+RGQAL+RQYRV  GF ++          S S  E   L+EA WSLEYE G+TE+WA+I LA VL  W+PVWL+WC+ VFY+  +  GFK+ALHERKWLAF+GL+VALYLNP+MV+GNFVAPGSASWGLASEM LSV VAVFLVVALCIADG+ +D+V   G G G  + FY+PK+V G +TL LML +DL SFP+LT   RGSLLAVQNWPES+R  F  +ASARI M++LW +WML RIYISG LLR+LPYVP RYQQLSYRFF LQAFLLG VYV FALWRLIDIL+ DLGGNTVAAEFMLFIKTRQ
Sbjct:  438 QEDISARVRSLPENRGYTMFNFYQNQETIRGQALVRQYRVQVGFVSSTTXXXXXXXXSGSTEEPFSLSEARWSLEYETGATEEWAKIVLAVVLVCWVPVWLAWCWTVFYKNGEG-GFKNALHERKWLAFMGLAVALYLNPIMVVGNFVAPGSASWGLASEMSLSVAVAVFLVVALCIADGVAKDRV---GGGAGGSLGFYVPKVVFGVLTLALMLLVDLTSFPTLTGMDRGSLLAVQNWPESQRHAFAGVASARIFMVMLWAVWMLCRIYISGCLLRKLPYVPNRYQQLSYRFFALQAFLLGIVYVTFALWRLIDILNDDLGGNTVAAEFMLFIKTRQ 771          
BLAST of mRNA_H-elongata_contig17388.4515.1 vs. uniprot
Match: A0A6H5KRH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH3_9PHAE)

HSP 1 Score: 442 bits (1138), Expect = 1.320e-143
Identity = 228/328 (69.51%), Postives = 264/328 (80.49%), Query Frame = 1
Query:   31 LPTDRGYTIFNFYQNQETMRGQALIRQYRV--GFFATNGSSS--------AHELAGLAEATWSLEYEKGSTEQWARITLACVLALWLPVWLSWCYIVFYRKSDVVGFKHALHERKWLAFLGLSVALYLNPVMVIGNFVAPGSASWGLASEMLLSVGVAVFLVVALCIADGIVRDKVKKSGRGRGYKI-FYIPKIVIGGVTLLLMLTMDLMSFPSLTAWQRGSLLAVQNWPESERKTFTFMASARIAMLILWGMWMLWRIYISGSLLRQLPYVPTRYQQLSYRFFGLQAFLLGAVYVMFALWRLIDILDKDLGGNTVAAEFMLFIKTRQ 981
            LP +RGYT+FNFYQNQET+RGQAL+RQYRV  GF ++               E   L+EA WSLEYE G+TE+WA+I LA VL  W+PVWL+WC+ VFY+  +  GFK+ALHERKWLAF+GL+VALYLNP+MV+GNFVAPGSASWGLASEM LSV VAVFLVVALCIADG+ +D+V   G G G  + FY+PK+V G +TL LML +DL SFP+LTA  RGSLLAVQNWPES+R  F  +ASARI M++LW +WML RIYISG LLR+LPYVP RYQQLSYRFF LQAFLLG VYV FALWRLIDIL+ DLGGNTVAAEFMLFIKTRQ
Sbjct:  614 LPENRGYTMFNFYQNQETIRGQALVRQYRVQVGFVSSTXXXXXXXXXXXXTEEPFSLSEARWSLEYETGATEEWAKIVLAVVLVCWVPVWLAWCWTVFYKNGEG-GFKNALHERKWLAFMGLAVALYLNPIMVVGNFVAPGSASWGLASEMSLSVAVAVFLVVALCIADGVGKDRV---GGGAGGSLGFYVPKVVFGVLTLALMLLVDLTSFPTLTAMDRGSLLAVQNWPESQRHAFAGVASARIFMVMLWAVWMLCRIYISGCLLRKLPYVPNRYQQLSYRFFALQAFLLGIVYVTFALWRLIDILNDDLGGNTVAAEFMLFIKTRQ 937          
BLAST of mRNA_H-elongata_contig17388.4515.1 vs. uniprot
Match: D8LEN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN4_ECTSI)

HSP 1 Score: 404 bits (1039), Expect = 2.450e-126
Identity = 207/338 (61.24%), Postives = 252/338 (74.56%), Query Frame = 1
Query:    1 QSGISVRVRSLPTDRGYTIFNFYQNQETMRGQALIRQYRV--GFFATNGSSSA---------HELAGLAEATWSLEYEKGSTEQWARITLACVLALWLPVWLSWCYIVFYRKSDVVGFKHALHERKWLAFLGLSVALYLNPVMVIGNFVAPGSASWGLASEMLLSVGVAVFLVVALCIADGIVRDKVKKSGRGRGYKIFYIPKIVIGGVTLLLMLTMDLMSFPSLTAWQRGSLLAVQNWPESERKTFTFMASARIAMLILWGMWMLWRIYISGSLLRQLPYVPTRYQQLSYRFFGLQAFLLGAVYVMFALWRLIDILDKDLGGNTVAAEFMLFIKTRQ 981
            Q  IS RVRSLP +R Y +FNF+QNQ+T+RGQAL+RQYRV   F +T  SSS+            + + EA WSLEYE G+T +WA+I LA VL  WLPVWL+WC+ VFYR ++  GFK+ALHER+WL  +GLSV LYLNP+ V+GNFVAPGSASWGLASEM LSV  A+ LVV LCIADG+ RD+V     G G   FY+ K+V G  T+  ML +D  SFP++    RGSLLAVQNWPES+++ F  +ASARI M++LW +WML R+Y+SG LLR+LPYVP RYQQLSYRFFGLQA LLG VY  F LWRLIDILD D+ GNT AA+ MLF++TRQ
Sbjct:  130 QENISARVRSLPENRAYALFNFHQNQDTIRGQALVRQYRVQVDFVSTTTSSSSTGDSSGSAERSFSWVREARWSLEYETGATTEWAKIILAVVLLCWLPVWLAWCWAVFYRSAEG-GFKNALHERRWLELIGLSVVLYLNPIKVVGNFVAPGSASWGLASEMSLSVAEAMLLVVTLCIADGVGRDRV-----GGGSLGFYLLKVVFGVWTMACMLLVDRASFPTVIGIDRGSLLAVQNWPESQQQAFELVASARIFMVMLWAVWMLCRMYVSGCLLRKLPYVPNRYQQLSYRFFGLQAILLGIVYTTFTLWRLIDILDDDMDGNTFAAQLMLFVRTRQ 461          
BLAST of mRNA_H-elongata_contig17388.4515.1 vs. uniprot
Match: D7G0U2_ECTSI (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U2_ECTSI)

HSP 1 Score: 324 bits (831), Expect = 2.880e-98
Identity = 176/338 (52.07%), Postives = 217/338 (64.20%), Query Frame = 1
Query:    1 QSGISVRVRSLPTDRGYTIFNFYQNQETMRGQALIRQYRV--GFFATNGSSSA---------HELAGLAEATWSLEYEKGSTEQWARITLACVLALWLPVWLSWCYIVFYRKSDVVGFKHALHERKWLAFLGLSVALYLNPVMVIGNFVAPGSASWGLASEMLLSVGVAVFLVVALCIADGIVRDKVKKSGRGRGYKIFYIPKIVIGGVTLLLMLTMDLMSFPSLTAWQRGSLLAVQNWPESERKTFTFMASARIAMLILWGMWMLWRIYISGSLLRQLPYVPTRYQQLSYRFFGLQAFLLGAVYVMFALWRLIDILDKDLGGNTVAAEFMLFIKTRQ 981
            Q  IS RVRSLP +RGYT+FNFYQNQ+T+ GQAL+RQYRV  GF +T  SSS+            + ++EA WSLEYE G+T +WA+  LA VL  W+PVWL+WC+ VFY+ S+  GFK+ALHERKWLA LGLSV  YLNP+ V+GNF  P SASWGLASEM  SV V +FLVV LCIA G+ RD V     G G   FY+PK                                               A+ARI M+ +W +W+L+ +Y SG LLR+LPYVP R++QLSYRFFGLQA LLG VYVMFALWRL+D L+ D+GG T+AA+ +L +K RQ
Sbjct:  370 QENISARVRSLPENRGYTLFNFYQNQDTIWGQALVRQYRVQVGFVSTTASSSSTGGSSGSAEESFSWVSEAKWSLEYETGATTEWAKSVLAVVLMCWVPVWLAWCWTVFYKTSEK-GFKNALHERKWLASLGLSVVFYLNPIKVVGNFAFPESASWGLASEMCFSVAVVMFLVVGLCIAGGVSRDWV-----GGGLLGFYVPKA----------------------------------------------AAARILMVRVWVVWILFCMYTSGRLLRKLPYVPNRFRQLSYRFFGLQAILLGVVYVMFALWRLVDTLNDDVGGKTLAAQLLLSVKARQ 655          
BLAST of mRNA_H-elongata_contig17388.4515.1 vs. uniprot
Match: D8LRA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA0_ECTSI)

HSP 1 Score: 287 bits (734), Expect = 5.000e-84
Identity = 165/324 (50.93%), Postives = 207/324 (63.89%), Query Frame = 1
Query:   37 TDRGYTIFNFYQNQETMRGQALIRQYRV--GFFATNGS---SSAHELAGLAEATWSLEYEKGSTEQWARITLACVLALWLPVWLSWCYIVFYRKSDVVGFKHA--LHERKWLAFLGLSVALYLNPVMVIGNFV-APGSASWGLASEMLLSVGVAVFLVVALCIADGIVRDKVKKSGRGRGYKIFYIPKIVIGGVTLLLMLTMDLMSFPSLTAWQRGSLLAVQNWPESERKTFTFMASARIAMLILWGMWMLWRIYISGSLLRQLPYVPTRYQQLSYRFFGLQAFLLGAVYVMFALWRLIDILDKDLGGNTVAAEFMLFI-KTRQ 981
            +DRGY IFNF QNQET+RG+A+I+QYRV  GF +T  S   SS  + +GL  A W+L YE     + + + +AC L LW+  WLSWC+ VF R+    GF+      E K LAF GLSVALYL     +G+   APGSASWGLASEM+ S+  AVFLV ALC+ADGI R  V           FY PK+ +G   L+ ML +DL  FPSL  W  GSL+A+ NWP ++   FT +A A + ++ +W      RI  +G LLRQLPYVPTR+QQLSY FFGLQ   L  V+ + AL RL  ILD DLGGN+V AEF+LF+  TRQ
Sbjct:  584 SDRGYEIFNFRQNQETVRGEAIIQQYRVLVGFVSTTSSTSTSSEADFSGLTTARWTLTYETRGAGRGSGVAMACALGLWVVGWLSWCHAVFRRREG--GFEDGGPHFEHKCLAFAGLSVALYL-----VGSLRGAPGSASWGLASEMMRSLAAAVFLVAALCMADGIPRRSVDNRFT-IAIARFYAPKVALGVAALMFMLLVDLALFPSLAGWDHGSLVAMDNWPHAQLVAFTLVAVAEMVLMAMWXXXXXXRITSAGRLLRQLPYVPTRFQQLSYTFFGLQVLFLVLVFAVLALARLARILDTDLGGNSVGAEFLLFVVNTRQ 899          
BLAST of mRNA_H-elongata_contig17388.4515.1 vs. uniprot
Match: A0A6H5JIC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIC3_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 4.340e-66
Identity = 142/285 (49.82%), Postives = 176/285 (61.75%), Query Frame = 1
Query:   31 LPT-DRGYTIFNFYQNQETMRGQALIRQYRV--GFFATNGSSSAH---ELAGLAEATWSLEYEKGSTEQWARITLACVLALWLPVWLSWCYIVFYRKSDVVGFKHA--LHERKWLAFLGLSVALYLNPVMVIGNFV-APGSASWGLASEMLLSVGVAVFLVVALCIADGIVRDKVKKSGRGRGYKIFYIPKIVIGGVTLLLMLTMDLMSFPSLTAWQRGSLLAVQNWPESERKTFTFMASARIAMLILWGMWMLWRIYISGSLLRQLPYVPTRYQQLSYRFFGLQ 858
            LP+ DRGY IFNF QNQET+RG+A+I QYRV  GF +T  S+S     + +GL  A W+L YE     + + + +AC L LW+   L WC+ VF R+    GF+      E K LAF+GLSVALYL     +GN   APGSASWGLASEML S+  AVFLV ALC+ADGI R  V           FY PK+ +G   L+ ML +DL  FPSL  W  GSL+A+ NWP +++  F  +A A +A           RI  +G LLRQLPYVPTR+QQLSY FFGLQ
Sbjct:  827 LPSSDRGYEIFNFRQNQETVRGEAIIHQYRVLVGFVSTTSSTSTSSEVDFSGLTTARWTLTYETRGAGRGSGVAVACALGLWVAGCLWWCHAVFRRQG---GFEDGGPQFEHKCLAFVGLSVALYL-----VGNLRGAPGSASWGLASEMLRSLAAAVFLVAALCMADGISRRGVDDRFT-IAIARFYAPKVALGVAALMFMLLVDLALFPSLAGWDHGSLVAMNNWPHAQQVAFALVAVAEMAXXXXXXXXXXXRITSAGRLLRQLPYVPTRFQQLSYTFFGLQ 1102          
BLAST of mRNA_H-elongata_contig17388.4515.1 vs. uniprot
Match: A0A6H5KPV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV3_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 1.950e-44
Identity = 88/183 (48.09%), Postives = 111/183 (60.66%), Query Frame = 1
Query:   31 LPTDRGYTIFNFYQNQETMRGQALIRQYRV-----------------------------GFFATNGSSSA---------HELAGLAEATWSLEYEKGSTEQWARITLACVLALWLPVWLSWCYIVFYRKSDVVGFKHALHERKWLAFLGLSVALYLNPVMVIGNFVAPGSASWGLASEMLLSV 465
            L  +RGYT+FNFYQNQ+T+ GQAL+RQYRV                             GF +T  SSS+            + ++EA WSLEYE G+T +W +I LA +L  W+PVWL+WC  VFY+ S+  GFK+A HERKWL+ LGLSV  YLNP+ V+GNF +P SASW L SEM  SV
Sbjct:  467 LAENRGYTLFNFYQNQDTIWGQALVRQYRVQVCSHPVSGRFRLSLRAFAHRHHPWIVHVGFVSTTASSSSTGGSSDSAEESFSWVSEAMWSLEYESGATTEWEKIVLAVLLMCWVPVWLAWCLTVFYKSSER-GFKNAWHERKWLSSLGLSVVFYLNPIKVVGNFASPESASWDLTSEMCFSV 648          
BLAST of mRNA_H-elongata_contig17388.4515.1 vs. uniprot
Match: A0A7S2GJP9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GJP9_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 9.260e-20
Identity = 69/260 (26.54%), Postives = 129/260 (49.62%), Query Frame = 1
Query:   76 QETMRGQALIRQYRVGFFATNGSSSAHELAGLAEATWSLEYEKGSTEQWARITLACVLALWLPVWLSWCYIVFYRKSDVVGFKHALHERKWLAFLGLSVALYLNPVMVIGNFVAPGSASWG-LASEMLLSVGVAVFLVVALCIADGIVRDKVKKSGRGRGYKIFYIPKIVIGGVTLLLMLTMDLMSFPSLTAWQRGS-LLAVQNWPESERKTFTFMASARIAMLILWGMWMLWRIYISGSLLRQLPYVPTRYQQLSYRFF 849
            QET+  Q  +  Y+V  F  +   +  ++  +  + +   Y+  +T   AR+    ++ L +   + W  ++      +  +   L ER+WL    + + +YL+PV  +  + +    S     SE+   VG   FL+V L +ADG+       SGR    + FY+PKI +     +  + M ++S+P+L + +  S LL V +W  + +  +       + +L +W +W++  +  +G +LR+LPY+ TR+QQL YRFF
Sbjct:    1 QETLPNQGEVTAYKVKVFFDSNDPAFRDV--ILSSRYEFTYDANTTPLAARVGQCVLMFLTVVFLVVWTSVL----GGLRAWNQWLPERRWLFVFLIGLLIYLDPVYTVAQWFSNELYSKAAFLSEVCEVVGEVCFLLVLLLMADGLAY-----SGRKLCIRRFYMPKIALAAGVFMCSICMTILSYPALYSGRDTSPLLCVADWGYTLQVMYVTSGLLVLFLLTVWFVWLIACVTNTGRVLRRLPYLQTRFQQLPYRFF 249          
BLAST of mRNA_H-elongata_contig17388.4515.1 vs. uniprot
Match: A0A482USN6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482USN6_9ARCH)

HSP 1 Score: 91.7 bits (226), Expect = 1.050e-16
Identity = 76/285 (26.67%), Postives = 135/285 (47.37%), Query Frame = 1
Query:   55 IFNFYQNQETMRGQALIRQYRVGFFATNGSSSAHELAGLAEATW----SLEYEKGSTEQWARITLACVLALWLPVWLSWCYIVFYRKSDVVGFKHALHERKWLAFLGLSVALYLNPVMVIGNFVAPGSASWGLASEMLLS-VGVAVFLVVALCIADGIVRDKVKKSGRGRGYKIFYIPKIVIGGVTLLLMLTMDLMSFPSL--TAWQRGSLLAVQNWPESERKTFTFMASARIAMLILWGMWMLWRIYISGSLLRQLPYVPTRYQQLSYRFFGLQAFLLGAVYVM 888
            I N +QNQE++    L+R Y   + + +   + ++L    +       + E++  +  Q        ++ L++ V L   Y+   +KS +   +  L E+KW+    + V L+ NPV +I  +           +  LLS +G +   ++ L  AD + R    +        +FY PKI +G       + +    FP L  T   R ++ AVQNW E+ +  F       + ++ +W ++    +Y +G+ L++LPY+ TRY QLSYRFF +QA L+   YV+
Sbjct:  228 ITNTFQNQESIPTNGLVRSY---YISVSYIQAPYDLFSAEDEDTQQYITYEFDVVNRSQQRAADGLTIVMLFITVALLVAYVHVLQKSSLK--RPILSEQKWIVAYFILVILFQNPVYLIIVWXXXXXXXXXAYTSYLLSYLGQSGLFMLWLLFADPVQRKTQNRL-------MFYSPKIFVGLAIFTASMVVLTFQFPGLDPTNPDRNAVEAVQNWSEALKLDFIGFTMLYLILIWVWAVYWFVILYRTGNKLKKLPYMSTRYMQLSYRFFAVQATLVTLYYVL 500          
BLAST of mRNA_H-elongata_contig17388.4515.1 vs. uniprot
Match: A0A7S3Y5L6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5L6_HETAK)

HSP 1 Score: 84.0 bits (206), Expect = 3.730e-14
Identity = 57/166 (34.34%), Postives = 86/166 (51.81%), Query Frame = 1
Query:  448 EMLLSVGVAVFLVVALCIADGIVRDKVKKSGRGRGYKIFYIPKIVIGGVTLLLMLTMDLMSFPSLTAWQRGSLLAVQNWPESERKTFTFMASARIAMLILWGMWMLWRIYISGSLLRQLPYVPTRYQQLSYRFFGLQAFLLGAVYVMFALWRLIDILDKDLGGNTV 945
            E+L  VG A    V + +ADGI         R R    FY  K+  G + ++L + +   +FP+LT   R  LLAV NWP   +  +     A + ++I W ++ +     +G  L+++PY+  R Q L+YRFF LQA L+GAV+V   L   +D+ D    GN V
Sbjct:    4 ELLTFVGQASIFTVFMFLADGI---------RERTTFGFYFSKVAFGLLLMVLFVLLVTSNFPTLTGSHRSPLLAVANWPHWLQWRYAVTGGALLVLIIYWALFFVVCCVSTGRRLKKIPYIKARQQHLTYRFFLLQAVLVGAVFV---LEDALDLSDLLSAGNLV 157          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17388.4515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D8LEN2_ECTSI1.280e-15069.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRH3_9PHAE1.320e-14369.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEN4_ECTSI2.450e-12661.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0U2_ECTSI2.880e-9852.07Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
D8LRA0_ECTSI5.000e-8450.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIC3_9PHAE4.340e-6649.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPV3_9PHAE1.950e-4448.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2GJP9_9STRA9.260e-2026.54Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A482USN6_9ARCH1.050e-1626.67Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3Y5L6_HETAK3.730e-1434.34Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17388contigH-elongata_contig17388:3657..7208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score452.6
Seed ortholog evalue1.6e-124
Seed eggNOG ortholog2880.D8LEN2
EggNOG free text desc.phospholipase A1 activity
EggNOG OGsKOG4569@1,KOG4569@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size990
Cds size990
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17388.4515.1prot_H-elongata_contig17388.4515.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17388 3657..7208 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930010.039857-CDS-H-elongata_contig17388:3656..37881622930010.039857-CDS-H-elongata_contig17388:3656..3788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17388 3657..3788 -
1691679244.645063-CDS-H-elongata_contig17388:3656..37881691679244.645063-CDS-H-elongata_contig17388:3656..3788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17388 3657..3788 -
1622930010.0536346-CDS-H-elongata_contig17388:4115..42591622930010.0536346-CDS-H-elongata_contig17388:4115..4259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17388 4116..4259 -
1691679244.6580725-CDS-H-elongata_contig17388:4115..42591691679244.6580725-CDS-H-elongata_contig17388:4115..4259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17388 4116..4259 -
1622930010.068326-CDS-H-elongata_contig17388:4498..46361622930010.068326-CDS-H-elongata_contig17388:4498..4636Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17388 4499..4636 -
1691679244.6669037-CDS-H-elongata_contig17388:4498..46361691679244.6669037-CDS-H-elongata_contig17388:4498..4636Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17388 4499..4636 -
1622930010.0811014-CDS-H-elongata_contig17388:5155..54071622930010.0811014-CDS-H-elongata_contig17388:5155..5407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17388 5156..5407 -
1691679244.6766837-CDS-H-elongata_contig17388:5155..54071691679244.6766837-CDS-H-elongata_contig17388:5155..5407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17388 5156..5407 -
1622930010.0966973-CDS-H-elongata_contig17388:6114..63211622930010.0966973-CDS-H-elongata_contig17388:6114..6321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17388 6115..6321 -
1691679244.6962543-CDS-H-elongata_contig17388:6114..63211691679244.6962543-CDS-H-elongata_contig17388:6114..6321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17388 6115..6321 -
1622930010.116976-CDS-H-elongata_contig17388:7091..72081622930010.116976-CDS-H-elongata_contig17388:7091..7208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17388 7092..7208 -
1691679244.7097514-CDS-H-elongata_contig17388:7091..72081691679244.7097514-CDS-H-elongata_contig17388:7091..7208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17388 7092..7208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17388.4515.1

>prot_H-elongata_contig17388.4515.1 ID=prot_H-elongata_contig17388.4515.1|Name=mRNA_H-elongata_contig17388.4515.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=330bp
QSGISVRVRSLPTDRGYTIFNFYQNQETMRGQALIRQYRVGFFATNGSSS
AHELAGLAEATWSLEYEKGSTEQWARITLACVLALWLPVWLSWCYIVFYR
KSDVVGFKHALHERKWLAFLGLSVALYLNPVMVIGNFVAPGSASWGLASE
MLLSVGVAVFLVVALCIADGIVRDKVKKSGRGRGYKIFYIPKIVIGGVTL
LLMLTMDLMSFPSLTAWQRGSLLAVQNWPESERKTFTFMASARIAMLILW
GMWMLWRIYISGSLLRQLPYVPTRYQQLSYRFFGLQAFLLGAVYVMFALW
RLIDILDKDLGGNTVAAEFMLFIKTRQAC*
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mRNA from alignment at H-elongata_contig17388:3657..7208-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17388.4515.1 ID=mRNA_H-elongata_contig17388.4515.1|Name=mRNA_H-elongata_contig17388.4515.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3552bp|location=Sequence derived from alignment at H-elongata_contig17388:3657..7208- (Himanthalia elongata Himel1 dioecious)
CAGTCAGGCATCTCCGTGCGCGTTCGGAGCCTCCCGACGGACCGTGGATA CACGATCTTCAACTTCTATCAGAATCAGGAGACCATGAGGGGACAAGCGC TCATCCGGCAGTACCGTGTACAGGCACGGATTACCACCTGAACACGCACG CACACACACACACACACACTATACAATATAATTGATTCCCCATTGGGAGA ATCAATGCCAGTACGGTAGCATATACCTGGTATTGATTTATCAATAGCAT AGCAGAACCGAGCGGAGCGGTTTTAGGGACGATCGCGTGCAAAGCAGATA CTTTTGGGGAACGCGTGCGCGGTAGCACCGTAATTATCATCAGCGGTGGG CAGTACGAGGTGTGCTCGCGCGGTGCGTGCTTTGCATCGAGAGCATGTAG TGAATGCTACCTGGCTAGCATCTGATATCGTCGCGACACTTTTCGGCTTT TATACCGTAACTATAATGGACGAACGAACGAGCTAGATGTTTTTGCTTGC TTCCGTCTGTGTCGTGCCTAAAGAGTTCCGGAAAATCGTGAAACGGCGAC CCCCGCCAGGAAAAGAAAGACGAGTAGTTGGCTTGAATTCCTCTCTCCCT CAGGCTCCAGTTTTTAGGAGAGCGTGCCTTTGTGCGCAAGAAACGAACGT TGTCTTGTGCGAGGTGCCCCCCTCCCCGGGCCCGAACCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCGCCCGCCCCGCGGGGCGGGGAAAGGG GNNNNNNNNNNCCTTTGTGCGCAAAAAACGACCGTTTTTTTTGGGGGGGG CCCCCCCCCCCGGGACCCGAACCCCCCCCCCCCCCCCTCCCTCCCCACCC CCACGCTTCCCCCTGTCCTTCCCCCTCCTATCGGCAGGTTGGCTTTTTTG CGACCAACGGTAGCAGCTCGGCGCATGAGCTTGCCGGATTGGCTGAGGCG ACATGGTCGCTGGAGTACGAAAAGGGGTCGACGGAGCAATGGGCAAGAAT AACCCTGGCGTGTGTGCTAGCGCTCTGGCTTCCGGTGTGGCTGTCGTGGT GCTACATTGTGTTCTATCGCAAGTCGGATGTGGTAGGGTTTAAGGTGAGG CATCGCCGTCAGCGGCAGGGGGGGTGCTGTCGCTTCGTGTATCTGGGGGA AATGAGATGAACTACAACCCGTTCCAGATTGTACTTTATGGATAAGTAGA AATCCCCCCCCAGAAACGAGTTTTCTGGAAGAGGGGGGTTTTGGCTTTGC TATCAGGATTCCACGTATCAGACGTAACATACGTGTTGTACACATTTGAA CCTGACGATAGTTGGTTCCCTGGACTGCACCTCTCACGGTGCTAAGAAGG CGTGGATGTTCGGAGGGTTTGAATGAGTTCATATATATTTTTAAATAACA ATGCTCCGCGCGGTCGCAGGTATGTATATATATATATATATATTAACATA ATCTAGATATATGATAATATAAAGCTAAACGTTTGGCTGGCGAAATGCTG TTAACGTGCTCCGGATCCTTGTGTGTGTGTGGCGGTGTGGCGTGACTTGT GCAAGTACGTCGACGTACACACACGTCCAAAAGTGGGAAATAATGCCTTT ATATACCTACTACTAATATCATTATCACCCTTGGCTTCGTGCCTCTGGTT GTCTGGTCTCTTTCGGGAGGGACGATCGCGTCAAATAAACGAGAGACACA AACTAGCGCTCCCGCCTCCCACTTGCAATCACGGCTACGCACGGTTATGC GCAGTAGTGACATGCTTCCCCGCCCCCCGCAACGTCTTCGCTCATCTCTA GCACGCGCTGCACGAACGAAAGTGGCTGGCCTTCCTCGGGCTCTCGGTAG CGCTGTATCTCAACCCCGTCATGGTGATCGGGAACTTCGTAGCCCCCGGG TCGGCGTCATGGGGGCTGGCGAGCGAGATGTTGCTCAGTGTAGGCGTGGC GGTATTCCTGGTTGTGGCGCTGTGTATCGCGGACGGCATCGTCCGGGACA AGGTCAAAAAGAGCGGCCGGGGCCGAGGATACAAGATCTTCTATATCCCT AAGGTAGGCATGTGGGGCAGGATGGGGGTGGGGTGGGGGTGGGGAAGAGA CATGTTTTTTGTCTGTGTGGGGCGTGATTATGCTCGGGGGGATAGTAATA GAAAGCCGTGGAAGGCAAACCCTAGAAATGTATGCTTTCGACGTACCCTT GAGGCTTTGCTCTGAAGCGCCCACGCTCCTCCCTTGTAGAAGAAGACATG GCAAGCAGGCTGAAGCGGGTGTTACCTATATGCATGCGCGTACTCGCGAG TGTGTAGATGTACATGGTTGTGTATATTGTATGTTTGTCTATGTGTCTTA TATATGAGATTCGTGTAGCCACGGTATCGGCTCATCGCCTCGCACCATCC CATCACAGACAAACGAAGACAGTTTTGCTTCAAACGTATCCGAAGGCTTC TTCCGCTATAACACGGTGTCAATCTCCGTTCTATCCGCGCGCCCGCCGGC TCTCGGTCTCCGTCTCCCCTCCCGCTCTTGAAAACCCACCCTTTACTGTA TTCGGGTGTGCGACGCGCGAAGATCGTCATAGGAGGGGTGACCCTGTTAC TGATGCTGACCATGGACCTGATGTCATTCCCCAGCTTAACGGCGTGGCAG CGCGGCTCGTTGTTGGCGGTCCAGAACTGGCCCGAGTCAGAGCGGAAGAC ATTCACCTTCGTGAGCCGCGCGCCGATCCATGGACTTTCGATTGCCGTGT TGAGATCTTGAATGGCGGAGATAAAGGGATATAAAAATTCACATAGCAAA AATACTATTAATAGTAATAAGATCGATGCCGCCCGCGTGCGTCTCCAATG GCTTCTTCGCCGCGCGCTGGTGCGGCACGACCAAGCTGCTATAGTACTAC ACCATACTTGCCTTTATCGTGTCCGCCGCGGGCGTGTGTGGCTACGCAGA TGGCGTCGGCGCGCATCGCCATGCTGATCTTGTGGGGCATGTGGATGCTC TGGAGAATCTACATCTCCGGATCGCTGCTGAGGCAGCTGCCGTACGTGCC GACGCGCTACCAGCAGCTATCCTACCGCTTCTTCGGCCTTCAGGTGTCTC TGTGGCAGAGCGAGGCGGCTCTTTTTTGCGCGTTTGGGTGTGAATGGGGA GGGGGAGGGGGGTGGTATCGGGCTGAAAAAAAGACCCGCGAAGCTGAACG TCATTCCTTCTTTTATTTACCCATACTTTTGTATGTTCCCCTTTCTCTCA ATTTTCCGGCAGCTGTCGTGATTTCTTGACGTAGTGATGATTTTGTTTGT GTAGTTAATGTTTACACATAAATCGTGTAGGCACGTCACGGCGAACCACG GTTATCATTCATAATATATCCCCCCCACCCACCCTCTGTTATCGCTAAAT AAATTATCTTCACAACGAAGGCTTTCCTGCTGGGCGCGGTGTACGTAATG TTCGCCCTGTGGCGCCTGATCGACATCTTGGACAAGGACCTGGGGGGCAA CACGGTGGCTGCCGAGTTCATGCTCTTCATCAAGACTAGACAGGCGTGTT GA
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Coding sequence (CDS) from alignment at H-elongata_contig17388:3657..7208-

>mRNA_H-elongata_contig17388.4515.1 ID=mRNA_H-elongata_contig17388.4515.1|Name=mRNA_H-elongata_contig17388.4515.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1980bp|location=Sequence derived from alignment at H-elongata_contig17388:3657..7208- (Himanthalia elongata Himel1 dioecious)
CAGTCAGGCATCTCCGTGCGCGTTCGGAGCCTCCCGACGGACCGTGGATA
CACGATCTTCAACTTCTATCAGAATCAGGAGACCATGAGGGGACAAGCGC
TCATCCGGCAGTACCGTCAGTCAGGCATCTCCGTGCGCGTTCGGAGCCTC
CCGACGGACCGTGGATACACGATCTTCAACTTCTATCAGAATCAGGAGAC
CATGAGGGGACAAGCGCTCATCCGGCAGTACCGTGTTGGCTTTTTTGCGA
CCAACGGTAGCAGCTCGGCGCATGAGCTTGCCGGATTGGCTGAGGCGACA
TGGTCGCTGGAGTACGAAAAGGGGTCGACGGAGCAATGGGCAAGAATAAC
CCTGGCGTGTGTGCTAGCGCTCTGGCTTCCGGTGTGGCTGTCGTGGTGCT
ACATTGTGTTCTATCGCAAGTCGGATGTGGTAGGGTTTAAGGTTGGCTTT
TTTGCGACCAACGGTAGCAGCTCGGCGCATGAGCTTGCCGGATTGGCTGA
GGCGACATGGTCGCTGGAGTACGAAAAGGGGTCGACGGAGCAATGGGCAA
GAATAACCCTGGCGTGTGTGCTAGCGCTCTGGCTTCCGGTGTGGCTGTCG
TGGTGCTACATTGTGTTCTATCGCAAGTCGGATGTGGTAGGGTTTAAGCA
CGCGCTGCACGAACGAAAGTGGCTGGCCTTCCTCGGGCTCTCGGTAGCGC
TGTATCTCAACCCCGTCATGGTGATCGGGAACTTCGTAGCCCCCGGGTCG
GCGTCATGGGGGCTGGCGAGCGAGATGTTGCTCAGTGTAGGCGTGGCGGT
ATTCCTGGTTGTGGCGCTGTGTATCGCGGACGGCATCGTCCGGGACAAGG
TCAAAAAGAGCGGCCGGGGCCGAGGATACAAGATCTTCTATATCCCTAAG
CACGCGCTGCACGAACGAAAGTGGCTGGCCTTCCTCGGGCTCTCGGTAGC
GCTGTATCTCAACCCCGTCATGGTGATCGGGAACTTCGTAGCCCCCGGGT
CGGCGTCATGGGGGCTGGCGAGCGAGATGTTGCTCAGTGTAGGCGTGGCG
GTATTCCTGGTTGTGGCGCTGTGTATCGCGGACGGCATCGTCCGGGACAA
GGTCAAAAAGAGCGGCCGGGGCCGAGGATACAAGATCTTCTATATCCCTA
AGATCGTCATAGGAGGGGTGACCCTGTTACTGATGCTGACCATGGACCTG
ATGTCATTCCCCAGCTTAACGGCGTGGCAGCGCGGCTCGTTGTTGGCGGT
CCAGAACTGGCCCGAGTCAGAGCGGAAGACATTCACCTTCATCGTCATAG
GAGGGGTGACCCTGTTACTGATGCTGACCATGGACCTGATGTCATTCCCC
AGCTTAACGGCGTGGCAGCGCGGCTCGTTGTTGGCGGTCCAGAACTGGCC
CGAGTCAGAGCGGAAGACATTCACCTTCATGGCGTCGGCGCGCATCGCCA
TGCTGATCTTGTGGGGCATGTGGATGCTCTGGAGAATCTACATCTCCGGA
TCGCTGCTGAGGCAGCTGCCGTACGTGCCGACGCGCTACCAGCAGCTATC
CTACCGCTTCTTCGGCCTTCAGATGGCGTCGGCGCGCATCGCCATGCTGA
TCTTGTGGGGCATGTGGATGCTCTGGAGAATCTACATCTCCGGATCGCTG
CTGAGGCAGCTGCCGTACGTGCCGACGCGCTACCAGCAGCTATCCTACCG
CTTCTTCGGCCTTCAGGCTTTCCTGCTGGGCGCGGTGTACGTAATGTTCG
CCCTGTGGCGCCTGATCGACATCTTGGACAAGGACCTGGGGGGCAACACG
GTGGCTGCCGAGTTCATGCTCTTCATCAAGACTAGACAGGCGTGTTGAGC
TTTCCTGCTGGGCGCGGTGTACGTAATGTTCGCCCTGTGGCGCCTGATCG
ACATCTTGGACAAGGACCTGGGGGGCAACACGGTGGCTGCCGAGTTCATG
CTCTTCATCAAGACTAGACAGGCGTGTTGA
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