mRNA_H-elongata_contig17388.4515.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17388.4515.1 vs. uniprot
Match: D8LEN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN2_ECTSI) HSP 1 Score: 458 bits (1178), Expect = 1.280e-150 Identity = 236/338 (69.82%), Postives = 272/338 (80.47%), Query Frame = 1
Query: 1 QSGISVRVRSLPTDRGYTIFNFYQNQETMRGQALIRQYRV--GFFATN--------GSSSAHELAGLAEATWSLEYEKGSTEQWARITLACVLALWLPVWLSWCYIVFYRKSDVVGFKHALHERKWLAFLGLSVALYLNPVMVIGNFVAPGSASWGLASEMLLSVGVAVFLVVALCIADGIVRDKVKKSGRGRGYKI-FYIPKIVIGGVTLLLMLTMDLMSFPSLTAWQRGSLLAVQNWPESERKTFTFMASARIAMLILWGMWMLWRIYISGSLLRQLPYVPTRYQQLSYRFFGLQAFLLGAVYVMFALWRLIDILDKDLGGNTVAAEFMLFIKTRQ 981
Q IS RVRSLP +RGYT+FNFYQNQET+RGQAL+RQYRV GF ++ S S E L+EA WSLEYE G+TE+WA+I LA VL W+PVWL+WC+ VFY+ + GFK+ALHERKWLAF+GL+VALYLNP+MV+GNFVAPGSASWGLASEM LSV VAVFLVVALCIADG+ +D+V G G G + FY+PK+V G +TL LML +DL SFP+LT RGSLLAVQNWPES+R F +ASARI M++LW +WML RIYISG LLR+LPYVP RYQQLSYRFF LQAFLLG VYV FALWRLIDIL+ DLGGNTVAAEFMLFIKTRQ
Sbjct: 438 QEDISARVRSLPENRGYTMFNFYQNQETIRGQALVRQYRVQVGFVSSTTXXXXXXXXSGSTEEPFSLSEARWSLEYETGATEEWAKIVLAVVLVCWVPVWLAWCWTVFYKNGEG-GFKNALHERKWLAFMGLAVALYLNPIMVVGNFVAPGSASWGLASEMSLSVAVAVFLVVALCIADGVAKDRV---GGGAGGSLGFYVPKVVFGVLTLALMLLVDLTSFPTLTGMDRGSLLAVQNWPESQRHAFAGVASARIFMVMLWAVWMLCRIYISGCLLRKLPYVPNRYQQLSYRFFALQAFLLGIVYVTFALWRLIDILNDDLGGNTVAAEFMLFIKTRQ 771
BLAST of mRNA_H-elongata_contig17388.4515.1 vs. uniprot
Match: A0A6H5KRH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH3_9PHAE) HSP 1 Score: 442 bits (1138), Expect = 1.320e-143 Identity = 228/328 (69.51%), Postives = 264/328 (80.49%), Query Frame = 1
Query: 31 LPTDRGYTIFNFYQNQETMRGQALIRQYRV--GFFATNGSSS--------AHELAGLAEATWSLEYEKGSTEQWARITLACVLALWLPVWLSWCYIVFYRKSDVVGFKHALHERKWLAFLGLSVALYLNPVMVIGNFVAPGSASWGLASEMLLSVGVAVFLVVALCIADGIVRDKVKKSGRGRGYKI-FYIPKIVIGGVTLLLMLTMDLMSFPSLTAWQRGSLLAVQNWPESERKTFTFMASARIAMLILWGMWMLWRIYISGSLLRQLPYVPTRYQQLSYRFFGLQAFLLGAVYVMFALWRLIDILDKDLGGNTVAAEFMLFIKTRQ 981
LP +RGYT+FNFYQNQET+RGQAL+RQYRV GF ++ E L+EA WSLEYE G+TE+WA+I LA VL W+PVWL+WC+ VFY+ + GFK+ALHERKWLAF+GL+VALYLNP+MV+GNFVAPGSASWGLASEM LSV VAVFLVVALCIADG+ +D+V G G G + FY+PK+V G +TL LML +DL SFP+LTA RGSLLAVQNWPES+R F +ASARI M++LW +WML RIYISG LLR+LPYVP RYQQLSYRFF LQAFLLG VYV FALWRLIDIL+ DLGGNTVAAEFMLFIKTRQ
Sbjct: 614 LPENRGYTMFNFYQNQETIRGQALVRQYRVQVGFVSSTXXXXXXXXXXXXTEEPFSLSEARWSLEYETGATEEWAKIVLAVVLVCWVPVWLAWCWTVFYKNGEG-GFKNALHERKWLAFMGLAVALYLNPIMVVGNFVAPGSASWGLASEMSLSVAVAVFLVVALCIADGVGKDRV---GGGAGGSLGFYVPKVVFGVLTLALMLLVDLTSFPTLTAMDRGSLLAVQNWPESQRHAFAGVASARIFMVMLWAVWMLCRIYISGCLLRKLPYVPNRYQQLSYRFFALQAFLLGIVYVTFALWRLIDILNDDLGGNTVAAEFMLFIKTRQ 937
BLAST of mRNA_H-elongata_contig17388.4515.1 vs. uniprot
Match: D8LEN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN4_ECTSI) HSP 1 Score: 404 bits (1039), Expect = 2.450e-126 Identity = 207/338 (61.24%), Postives = 252/338 (74.56%), Query Frame = 1
Query: 1 QSGISVRVRSLPTDRGYTIFNFYQNQETMRGQALIRQYRV--GFFATNGSSSA---------HELAGLAEATWSLEYEKGSTEQWARITLACVLALWLPVWLSWCYIVFYRKSDVVGFKHALHERKWLAFLGLSVALYLNPVMVIGNFVAPGSASWGLASEMLLSVGVAVFLVVALCIADGIVRDKVKKSGRGRGYKIFYIPKIVIGGVTLLLMLTMDLMSFPSLTAWQRGSLLAVQNWPESERKTFTFMASARIAMLILWGMWMLWRIYISGSLLRQLPYVPTRYQQLSYRFFGLQAFLLGAVYVMFALWRLIDILDKDLGGNTVAAEFMLFIKTRQ 981
Q IS RVRSLP +R Y +FNF+QNQ+T+RGQAL+RQYRV F +T SSS+ + + EA WSLEYE G+T +WA+I LA VL WLPVWL+WC+ VFYR ++ GFK+ALHER+WL +GLSV LYLNP+ V+GNFVAPGSASWGLASEM LSV A+ LVV LCIADG+ RD+V G G FY+ K+V G T+ ML +D SFP++ RGSLLAVQNWPES+++ F +ASARI M++LW +WML R+Y+SG LLR+LPYVP RYQQLSYRFFGLQA LLG VY F LWRLIDILD D+ GNT AA+ MLF++TRQ
Sbjct: 130 QENISARVRSLPENRAYALFNFHQNQDTIRGQALVRQYRVQVDFVSTTTSSSSTGDSSGSAERSFSWVREARWSLEYETGATTEWAKIILAVVLLCWLPVWLAWCWAVFYRSAEG-GFKNALHERRWLELIGLSVVLYLNPIKVVGNFVAPGSASWGLASEMSLSVAEAMLLVVTLCIADGVGRDRV-----GGGSLGFYLLKVVFGVWTMACMLLVDRASFPTVIGIDRGSLLAVQNWPESQQQAFELVASARIFMVMLWAVWMLCRMYVSGCLLRKLPYVPNRYQQLSYRFFGLQAILLGIVYTTFTLWRLIDILDDDMDGNTFAAQLMLFVRTRQ 461
BLAST of mRNA_H-elongata_contig17388.4515.1 vs. uniprot
Match: D7G0U2_ECTSI (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U2_ECTSI) HSP 1 Score: 324 bits (831), Expect = 2.880e-98 Identity = 176/338 (52.07%), Postives = 217/338 (64.20%), Query Frame = 1
Query: 1 QSGISVRVRSLPTDRGYTIFNFYQNQETMRGQALIRQYRV--GFFATNGSSSA---------HELAGLAEATWSLEYEKGSTEQWARITLACVLALWLPVWLSWCYIVFYRKSDVVGFKHALHERKWLAFLGLSVALYLNPVMVIGNFVAPGSASWGLASEMLLSVGVAVFLVVALCIADGIVRDKVKKSGRGRGYKIFYIPKIVIGGVTLLLMLTMDLMSFPSLTAWQRGSLLAVQNWPESERKTFTFMASARIAMLILWGMWMLWRIYISGSLLRQLPYVPTRYQQLSYRFFGLQAFLLGAVYVMFALWRLIDILDKDLGGNTVAAEFMLFIKTRQ 981
Q IS RVRSLP +RGYT+FNFYQNQ+T+ GQAL+RQYRV GF +T SSS+ + ++EA WSLEYE G+T +WA+ LA VL W+PVWL+WC+ VFY+ S+ GFK+ALHERKWLA LGLSV YLNP+ V+GNF P SASWGLASEM SV V +FLVV LCIA G+ RD V G G FY+PK A+ARI M+ +W +W+L+ +Y SG LLR+LPYVP R++QLSYRFFGLQA LLG VYVMFALWRL+D L+ D+GG T+AA+ +L +K RQ
Sbjct: 370 QENISARVRSLPENRGYTLFNFYQNQDTIWGQALVRQYRVQVGFVSTTASSSSTGGSSGSAEESFSWVSEAKWSLEYETGATTEWAKSVLAVVLMCWVPVWLAWCWTVFYKTSEK-GFKNALHERKWLASLGLSVVFYLNPIKVVGNFAFPESASWGLASEMCFSVAVVMFLVVGLCIAGGVSRDWV-----GGGLLGFYVPKA----------------------------------------------AAARILMVRVWVVWILFCMYTSGRLLRKLPYVPNRFRQLSYRFFGLQAILLGVVYVMFALWRLVDTLNDDVGGKTLAAQLLLSVKARQ 655
BLAST of mRNA_H-elongata_contig17388.4515.1 vs. uniprot
Match: D8LRA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA0_ECTSI) HSP 1 Score: 287 bits (734), Expect = 5.000e-84 Identity = 165/324 (50.93%), Postives = 207/324 (63.89%), Query Frame = 1
Query: 37 TDRGYTIFNFYQNQETMRGQALIRQYRV--GFFATNGS---SSAHELAGLAEATWSLEYEKGSTEQWARITLACVLALWLPVWLSWCYIVFYRKSDVVGFKHA--LHERKWLAFLGLSVALYLNPVMVIGNFV-APGSASWGLASEMLLSVGVAVFLVVALCIADGIVRDKVKKSGRGRGYKIFYIPKIVIGGVTLLLMLTMDLMSFPSLTAWQRGSLLAVQNWPESERKTFTFMASARIAMLILWGMWMLWRIYISGSLLRQLPYVPTRYQQLSYRFFGLQAFLLGAVYVMFALWRLIDILDKDLGGNTVAAEFMLFI-KTRQ 981
+DRGY IFNF QNQET+RG+A+I+QYRV GF +T S SS + +GL A W+L YE + + + +AC L LW+ WLSWC+ VF R+ GF+ E K LAF GLSVALYL +G+ APGSASWGLASEM+ S+ AVFLV ALC+ADGI R V FY PK+ +G L+ ML +DL FPSL W GSL+A+ NWP ++ FT +A A + ++ +W RI +G LLRQLPYVPTR+QQLSY FFGLQ L V+ + AL RL ILD DLGGN+V AEF+LF+ TRQ
Sbjct: 584 SDRGYEIFNFRQNQETVRGEAIIQQYRVLVGFVSTTSSTSTSSEADFSGLTTARWTLTYETRGAGRGSGVAMACALGLWVVGWLSWCHAVFRRREG--GFEDGGPHFEHKCLAFAGLSVALYL-----VGSLRGAPGSASWGLASEMMRSLAAAVFLVAALCMADGIPRRSVDNRFT-IAIARFYAPKVALGVAALMFMLLVDLALFPSLAGWDHGSLVAMDNWPHAQLVAFTLVAVAEMVLMAMWXXXXXXRITSAGRLLRQLPYVPTRFQQLSYTFFGLQVLFLVLVFAVLALARLARILDTDLGGNSVGAEFLLFVVNTRQ 899
BLAST of mRNA_H-elongata_contig17388.4515.1 vs. uniprot
Match: A0A6H5JIC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIC3_9PHAE) HSP 1 Score: 234 bits (598), Expect = 4.340e-66 Identity = 142/285 (49.82%), Postives = 176/285 (61.75%), Query Frame = 1
Query: 31 LPT-DRGYTIFNFYQNQETMRGQALIRQYRV--GFFATNGSSSAH---ELAGLAEATWSLEYEKGSTEQWARITLACVLALWLPVWLSWCYIVFYRKSDVVGFKHA--LHERKWLAFLGLSVALYLNPVMVIGNFV-APGSASWGLASEMLLSVGVAVFLVVALCIADGIVRDKVKKSGRGRGYKIFYIPKIVIGGVTLLLMLTMDLMSFPSLTAWQRGSLLAVQNWPESERKTFTFMASARIAMLILWGMWMLWRIYISGSLLRQLPYVPTRYQQLSYRFFGLQ 858
LP+ DRGY IFNF QNQET+RG+A+I QYRV GF +T S+S + +GL A W+L YE + + + +AC L LW+ L WC+ VF R+ GF+ E K LAF+GLSVALYL +GN APGSASWGLASEML S+ AVFLV ALC+ADGI R V FY PK+ +G L+ ML +DL FPSL W GSL+A+ NWP +++ F +A A +A RI +G LLRQLPYVPTR+QQLSY FFGLQ
Sbjct: 827 LPSSDRGYEIFNFRQNQETVRGEAIIHQYRVLVGFVSTTSSTSTSSEVDFSGLTTARWTLTYETRGAGRGSGVAVACALGLWVAGCLWWCHAVFRRQG---GFEDGGPQFEHKCLAFVGLSVALYL-----VGNLRGAPGSASWGLASEMLRSLAAAVFLVAALCMADGISRRGVDDRFT-IAIARFYAPKVALGVAALMFMLLVDLALFPSLAGWDHGSLVAMNNWPHAQQVAFALVAVAEMAXXXXXXXXXXXRITSAGRLLRQLPYVPTRFQQLSYTFFGLQ 1102
BLAST of mRNA_H-elongata_contig17388.4515.1 vs. uniprot
Match: A0A6H5KPV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV3_9PHAE) HSP 1 Score: 171 bits (432), Expect = 1.950e-44 Identity = 88/183 (48.09%), Postives = 111/183 (60.66%), Query Frame = 1
Query: 31 LPTDRGYTIFNFYQNQETMRGQALIRQYRV-----------------------------GFFATNGSSSA---------HELAGLAEATWSLEYEKGSTEQWARITLACVLALWLPVWLSWCYIVFYRKSDVVGFKHALHERKWLAFLGLSVALYLNPVMVIGNFVAPGSASWGLASEMLLSV 465
L +RGYT+FNFYQNQ+T+ GQAL+RQYRV GF +T SSS+ + ++EA WSLEYE G+T +W +I LA +L W+PVWL+WC VFY+ S+ GFK+A HERKWL+ LGLSV YLNP+ V+GNF +P SASW L SEM SV
Sbjct: 467 LAENRGYTLFNFYQNQDTIWGQALVRQYRVQVCSHPVSGRFRLSLRAFAHRHHPWIVHVGFVSTTASSSSTGGSSDSAEESFSWVSEAMWSLEYESGATTEWEKIVLAVLLMCWVPVWLAWCLTVFYKSSER-GFKNAWHERKWLSSLGLSVVFYLNPIKVVGNFASPESASWDLTSEMCFSV 648
BLAST of mRNA_H-elongata_contig17388.4515.1 vs. uniprot
Match: A0A7S2GJP9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GJP9_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 9.260e-20 Identity = 69/260 (26.54%), Postives = 129/260 (49.62%), Query Frame = 1
Query: 76 QETMRGQALIRQYRVGFFATNGSSSAHELAGLAEATWSLEYEKGSTEQWARITLACVLALWLPVWLSWCYIVFYRKSDVVGFKHALHERKWLAFLGLSVALYLNPVMVIGNFVAPGSASWG-LASEMLLSVGVAVFLVVALCIADGIVRDKVKKSGRGRGYKIFYIPKIVIGGVTLLLMLTMDLMSFPSLTAWQRGS-LLAVQNWPESERKTFTFMASARIAMLILWGMWMLWRIYISGSLLRQLPYVPTRYQQLSYRFF 849
QET+ Q + Y+V F + + ++ + + + Y+ +T AR+ ++ L + + W ++ + + L ER+WL + + +YL+PV + + + S SE+ VG FL+V L +ADG+ SGR + FY+PKI + + + M ++S+P+L + + S LL V +W + + + + +L +W +W++ + +G +LR+LPY+ TR+QQL YRFF
Sbjct: 1 QETLPNQGEVTAYKVKVFFDSNDPAFRDV--ILSSRYEFTYDANTTPLAARVGQCVLMFLTVVFLVVWTSVL----GGLRAWNQWLPERRWLFVFLIGLLIYLDPVYTVAQWFSNELYSKAAFLSEVCEVVGEVCFLLVLLLMADGLAY-----SGRKLCIRRFYMPKIALAAGVFMCSICMTILSYPALYSGRDTSPLLCVADWGYTLQVMYVTSGLLVLFLLTVWFVWLIACVTNTGRVLRRLPYLQTRFQQLPYRFF 249
BLAST of mRNA_H-elongata_contig17388.4515.1 vs. uniprot
Match: A0A482USN6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482USN6_9ARCH) HSP 1 Score: 91.7 bits (226), Expect = 1.050e-16 Identity = 76/285 (26.67%), Postives = 135/285 (47.37%), Query Frame = 1
Query: 55 IFNFYQNQETMRGQALIRQYRVGFFATNGSSSAHELAGLAEATW----SLEYEKGSTEQWARITLACVLALWLPVWLSWCYIVFYRKSDVVGFKHALHERKWLAFLGLSVALYLNPVMVIGNFVAPGSASWGLASEMLLS-VGVAVFLVVALCIADGIVRDKVKKSGRGRGYKIFYIPKIVIGGVTLLLMLTMDLMSFPSL--TAWQRGSLLAVQNWPESERKTFTFMASARIAMLILWGMWMLWRIYISGSLLRQLPYVPTRYQQLSYRFFGLQAFLLGAVYVM 888
I N +QNQE++ L+R Y + + + + ++L + + E++ + Q ++ L++ V L Y+ +KS + + L E+KW+ + V L+ NPV +I + + LLS +G + ++ L AD + R + +FY PKI +G + + FP L T R ++ AVQNW E+ + F + ++ +W ++ +Y +G+ L++LPY+ TRY QLSYRFF +QA L+ YV+
Sbjct: 228 ITNTFQNQESIPTNGLVRSY---YISVSYIQAPYDLFSAEDEDTQQYITYEFDVVNRSQQRAADGLTIVMLFITVALLVAYVHVLQKSSLK--RPILSEQKWIVAYFILVILFQNPVYLIIVWXXXXXXXXXAYTSYLLSYLGQSGLFMLWLLFADPVQRKTQNRL-------MFYSPKIFVGLAIFTASMVVLTFQFPGLDPTNPDRNAVEAVQNWSEALKLDFIGFTMLYLILIWVWAVYWFVILYRTGNKLKKLPYMSTRYMQLSYRFFAVQATLVTLYYVL 500
BLAST of mRNA_H-elongata_contig17388.4515.1 vs. uniprot
Match: A0A7S3Y5L6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5L6_HETAK) HSP 1 Score: 84.0 bits (206), Expect = 3.730e-14 Identity = 57/166 (34.34%), Postives = 86/166 (51.81%), Query Frame = 1
Query: 448 EMLLSVGVAVFLVVALCIADGIVRDKVKKSGRGRGYKIFYIPKIVIGGVTLLLMLTMDLMSFPSLTAWQRGSLLAVQNWPESERKTFTFMASARIAMLILWGMWMLWRIYISGSLLRQLPYVPTRYQQLSYRFFGLQAFLLGAVYVMFALWRLIDILDKDLGGNTV 945
E+L VG A V + +ADGI R R FY K+ G + ++L + + +FP+LT R LLAV NWP + + A + ++I W ++ + +G L+++PY+ R Q L+YRFF LQA L+GAV+V L +D+ D GN V
Sbjct: 4 ELLTFVGQASIFTVFMFLADGI---------RERTTFGFYFSKVAFGLLLMVLFVLLVTSNFPTLTGSHRSPLLAVANWPHWLQWRYAVTGGALLVLIIYWALFFVVCCVSTGRRLKKIPYIKARQQHLTYRFFLLQAVLVGAVFV---LEDALDLSDLLSAGNLV 157 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17388.4515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17388.4515.1 >prot_H-elongata_contig17388.4515.1 ID=prot_H-elongata_contig17388.4515.1|Name=mRNA_H-elongata_contig17388.4515.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=330bp QSGISVRVRSLPTDRGYTIFNFYQNQETMRGQALIRQYRVGFFATNGSSSback to top mRNA from alignment at H-elongata_contig17388:3657..7208- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17388.4515.1 ID=mRNA_H-elongata_contig17388.4515.1|Name=mRNA_H-elongata_contig17388.4515.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3552bp|location=Sequence derived from alignment at H-elongata_contig17388:3657..7208- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17388:3657..7208- >mRNA_H-elongata_contig17388.4515.1 ID=mRNA_H-elongata_contig17388.4515.1|Name=mRNA_H-elongata_contig17388.4515.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1980bp|location=Sequence derived from alignment at H-elongata_contig17388:3657..7208- (Himanthalia elongata Himel1 dioecious)back to top |