mRNA_H-elongata_contig17383.4513.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig17383.4513.1 vs. uniprot
Match: D8LE51_ECTSI (SEN1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE51_ECTSI) HSP 1 Score: 405 bits (1041), Expect = 3.090e-128 Identity = 198/270 (73.33%), Postives = 226/270 (83.70%), Query Frame = 1
Query: 1 PINTIERAVIMVGDPAQLPATIFSRKAKDANYEQSLFQRLQRGGHPKMMLDTQYRMHPSIASFASNRFYNGQLRSAPSVTEVSHGQIFHRLQRFAPYLFHHVAAGRLRRGAAGEGGSTMSLSNPAEVEYIIFLLKDLLRSFPNMDFNGRVGVIAPYRNQILALRRGIWKTGLRQDGVEISTVDGFQGREKEIMIFSCVRSPEERSRGSYGSQKGHNSIGFMSDWRRLNVAITRAKYSMWIIGHAGVLRQSEEWRELINDSKRRGAFVDHS 810
P+ RAVIMVGDPAQLPATIFS+ A+ ANY QSLF RLQRGGHPK MLDTQYRMHP IASFAS RFY+G LRSAP+VTE SHGQ+FHRL RFAPYLFH+V+ GRL+RG G GG+ SLSNP EV YI LL+DL+ +FP DFNGR+GVIAPYRNQI AL+RG+W TGLR DGVE+STVDGFQGREK+IMIFSCVR+PE + G GS G IGF+ DWRRLNVAITRAK++MWI+GHAGVL+QS +WRELINDSK+R AF+D S
Sbjct: 793 PLKYNPRAVIMVGDPAQLPATIFSKDAQRANYAQSLFLRLQRGGHPKTMLDTQYRMHPDIASFASTRFYSGLLRSAPTVTEASHGQVFHRLPRFAPYLFHNVSGGRLKRGGEGYGGAK-SLSNPTEVSYITSLLQDLITTFPGTDFNGRIGVIAPYRNQIRALQRGMWSTGLRHDGVEVSTVDGFQGREKDIMIFSCVRAPELQRSGDSGSSSG-GGIGFLDDWRRLNVAITRAKFAMWIVGHAGVLKQSTDWRELINDSKKRNAFIDSS 1060
BLAST of mRNA_H-elongata_contig17383.4513.1 vs. uniprot
Match: A0A6H5JS06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS06_9PHAE) HSP 1 Score: 402 bits (1034), Expect = 1.460e-126 Identity = 196/270 (72.59%), Postives = 225/270 (83.33%), Query Frame = 1
Query: 1 PINTIERAVIMVGDPAQLPATIFSRKAKDANYEQSLFQRLQRGGHPKMMLDTQYRMHPSIASFASNRFYNGQLRSAPSVTEVSHGQIFHRLQRFAPYLFHHVAAGRLRRGAAGEGGSTMSLSNPAEVEYIIFLLKDLLRSFPNMDFNGRVGVIAPYRNQILALRRGIWKTGLRQDGVEISTVDGFQGREKEIMIFSCVRSPEERSRGSYGSQKGHNSIGFMSDWRRLNVAITRAKYSMWIIGHAGVLRQSEEWRELINDSKRRGAFVDHS 810
P+ RAVIMVGDPAQLPATIFS+ A+ ANY QSLF RLQRGGHPK MLDTQYRMHP IASFAS RFY+G LRSAP+VTE SHGQ+FHRL RFAPYLFH+V+ GRL+RG G GG+ SLSNP EV YI LL DL+ +FP DFNG++GVIAPYRNQI AL+RG+W TGLR DGVE+STVDGFQGREK+IMIFSCVR+PE + G GS G +GF+ DWRRLNVAITRAK++MWI+GHAGVL+QS +WRELINDSK+R AF+D S
Sbjct: 984 PLKYNPRAVIMVGDPAQLPATIFSKDAQRANYAQSLFLRLQRGGHPKTMLDTQYRMHPDIASFASTRFYSGLLRSAPTVTEASHGQVFHRLPRFAPYLFHNVSGGRLKRGGEGYGGAK-SLSNPTEVSYITSLLHDLITTFPGTDFNGKIGVIAPYRNQIRALQRGMWSTGLRHDGVEVSTVDGFQGREKDIMIFSCVRAPELQRSGDSGSSSG-GGVGFLDDWRRLNVAITRAKFAMWIVGHAGVLKQSTDWRELINDSKKRDAFIDSS 1251
BLAST of mRNA_H-elongata_contig17383.4513.1 vs. uniprot
Match: A0A482SHI2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHI2_9ARCH) HSP 1 Score: 212 bits (539), Expect = 3.130e-62 Identity = 124/274 (45.26%), Postives = 161/274 (58.76%), Query Frame = 1
Query: 1 PINTIERAVIMVGDPAQLPATIFSRKAKDANYEQSLFQRLQRGGHPKMMLDTQYRMHPSIASFASNRFYNGQLRSAPSVTEV---SHGQIFHRLQRFAPYLFHHVAAGRLRRGAAGEGGSTMSLSNPAEVEYIIFLLKDLLRSFPNMDFNGRVGVIAPYRNQ----ILALRRGIWKTGLRQDGVEISTVDGFQGREKEIMIFSCVRSPEERSRGSYGSQKGHNSIGFMSDWRRLNVAITRAKYSMWIIGHAGVLRQSEEWRELINDSKRRGAFV 801
P + V+MVGDP QLPAT+FSR K+ANY QSLFQRLQR G P ML+TQYRMHP+IA F S R+YN L + P V S G + + F P +FH V GR + EG S+ N AE Y++ L L+R +P N +G+IAPYR Q L+ + EISTVDGFQGREK+I+IFSCVR+P S + G IGF+ +W+RLNVAITRA++ +W++GH L++ EW LI + + A V
Sbjct: 111 PFKYNPQLVVMVGDPCQLPATVFSRLCKEANYSQSLFQRLQRSGVPVAMLETQYRMHPAIAEFPSMRYYNNFLVTDPHVAATVPNSKGYYQDKSELFRPIVFHDVMYGREKL----EG---FSMYNTAEARYVVDLFCTLIRDYPKEKTN--IGIIAPYRAQRKLITRMLKEHLGGKVYNALDTEISTVDGFQGREKDIIIFSCVRAPTGNSSKQLIDRSGAG-IGFLKEWQRLNVAITRARFGLWLVGHKATLQKDGEWDALIRFIEAKKAVV 374
BLAST of mRNA_H-elongata_contig17383.4513.1 vs. uniprot
Match: UPI000D1CB6B0 (probable helicase MAGATAMA 3 n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1CB6B0) HSP 1 Score: 201 bits (512), Expect = 1.120e-58 Identity = 108/256 (42.19%), Postives = 157/256 (61.33%), Query Frame = 1
Query: 28 IMVGDPAQLPATIFSRKAKDANYEQSLFQRLQRGGHPKMMLDTQYRMHPSIASFASNRFYNGQLRSAPSVTEVSHGQIFHRLQRFAPYLFHHVAAGRLRRGAAGEGGSTMSLSNPAEVEYIIFLLKDLLRSFPNMDFNGRVGVIAPYRNQILALRRGIWKTGLRQDGVEISTVDGFQGREKEIMIFSCVRSPEERSRGSYG-SQKGHNSIGFMSDWRRLNVAITRAKYSMWIIGHAGVLRQSEEWRELINDSKRRG 792
I++GDP QLPAT+ S A ++ S+F+R Q+ G+P ML TQYRMHP I SF S +Y GQL+ +V + FHR +RF PY F + G+ R G S SL+NP E E+I LL+ L +P GR+GVI PY+ Q L+ + G++++TVD FQGRE +I++ S VR+ S+G SQ G +GF++D RR+NVA+TRAK+S+W++G+A L ++ +W+ L+ D +RRG
Sbjct: 169 ILIGDPKQLPATVLSVPASRLLFDCSMFERFQKNGYPVSMLTTQYRMHPEIRSFPSTHYYGGQLKDGSTVLHGNRSAPFHRERRFEPYRFFDIRDGQERPG------SMQSLTNPDEAEFIFQLLRVLKERYPEEVRPGRIGVITPYQEQRKVLQENMRSL---HSGIDVNTVDSFQGREADIIVLSTVRA-------SFGESQAG---VGFLADVRRMNVALTRAKFSLWVVGNARTLERNSDWKALLQDCRRRG 405
BLAST of mRNA_H-elongata_contig17383.4513.1 vs. uniprot
Match: A0A7S0SVB8_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SVB8_9STRA) HSP 1 Score: 204 bits (520), Expect = 1.320e-57 Identity = 118/259 (45.56%), Postives = 162/259 (62.55%), Query Frame = 1
Query: 25 VIMVGDPAQLPATIFSRKAKDANYEQSLFQRLQRGGHPKMMLDTQYRMHPSIASFASNRFYNGQLRSAPSVTEVSHG---QIFHRLQRFAPYLFHHVAAGRLRRGAAGEGGSTMSLSNPAEVEYIIFLLKDLLRSFPNMDFNGRVGVIAPYRNQILALRRGIWKTGLRQDGVEISTVDGFQGREKEIMIFSCVRSPEERSRGSYGSQKG-HNSIGFMSDWRRLNVAITRAKYSMWIIGHAGVLRQSEEWRELINDSKRR 789
VIMVGDP QLPA I S+K+K+ NY QSLF+RLQ+ G ML+TQYRMHP IA ++S RFYN QL + S+ E + FH ++F P++FH+V G + S N E YI + ++L R +P+ N +G+IAPY Q L++ + + VEIST+DGFQGREK+I+ FSCVR+P + SY + K N+IGF+ + +RLNVAITRA+ ++WI+GHA LR EW +L+N K R
Sbjct: 423 VIMVGDPCQLPAVILSKKSKECNYHQSLFERLQKSGVEMTMLNTQYRMHPYIADYSSFRFYNNQLLTDISLLENAERVRPYYFHPSEKFKPFVFHNVIKGY-------QTIENTSYKNIPEALYIAEMYQELKRFYPHCLDN--IGIIAPYSAQRKLLKQIFKERFGYKCNVEISTIDGFQGREKDIIFFSCVRAPNK----SYRNDKNADNNIGFLKEKQRLNVAITRARNALWIVGHADTLRGDSEWEQLLNYMKAR 668
BLAST of mRNA_H-elongata_contig17383.4513.1 vs. uniprot
Match: A0A6A3M5L9_9STRA (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3M5L9_9STRA) HSP 1 Score: 206 bits (525), Expect = 6.200e-57 Identity = 115/266 (43.23%), Postives = 165/266 (62.03%), Query Frame = 1
Query: 25 VIMVGDPAQLPATIFSRKAKDANYEQSLFQRLQRGGHPKMMLDTQYRMHPSIASFASNRFYNGQLRSAPSVTEVSHGQIFHRLQRFAPYLFHHVAAGRLRRGAAGEGGSTMSLSNPAEVEYIIFLLKDLLRSFPNMDFNGRVGVIAPYRNQILALRRGIWKTGLRQD---GVEISTVDGFQGREKEIMIFSCVRSPE----ERSRGSYGSQKGHNSIGFMSDWRRLNVAITRAKYSMWIIGHAGVLRQSEEWRELINDSKRRGAFV 801
V++VGD QLPAT+ S+K Y++SL QRL P ++L QYRMHP IA F S FY G+L ++ + Q +HR + F P LF V +GA + + SL N +EVE ++ LL+ LL+ FP++++ R+GVIAPY+ QI +R I K D G+E++TVDGFQGREKEI+I+SCVR+ ++ R S+G+ + F +D RR+NVAITRAK S+WI+G++ +L+QS WR LI +K F+
Sbjct: 1359 VVLVGDHRQLPATVISKKLVSMRYDRSLQQRLVENKSPVLLLTQQYRMHPDIAEFPSAHFYGGRLVQDDNMRNWT-AQDYHRDRAFKPLLFLDV------QGAQSQVSGSTSLRNMSEVETVVQLLRRLLKKFPHIEWKKRIGVIAPYKQQIYEVRGAIGKLESEFDRPLGIEVNTVDGFQGREKEIIIYSCVRTSHGGRRKKKRKSHGNDEEDVLDAFWADERRMNVAITRAKSSLWIVGNSNLLKQSRAWRALIKHTKDHNRFI 1617
BLAST of mRNA_H-elongata_contig17383.4513.1 vs. uniprot
Match: SEN1_YEAST (Helicase SEN1 n=14 Tax=Saccharomyces TaxID=4930 RepID=SEN1_YEAST) HSP 1 Score: 206 bits (524), Expect = 8.740e-57 Identity = 109/270 (40.37%), Postives = 167/270 (61.85%), Query Frame = 1
Query: 1 PINTIERAVIMVGDPAQLPATIFSRKAKDANYEQSLFQRLQRGGHPKMMLDTQYRMHPSIASFASNRFYNGQLRSAPSVTEVSHGQIFHRLQRFAPYLFHHVAAGRLRRGAAGEGGSTMSLSNPAEVEYIIFLLKDLLRSFPN-MDFNGRVGVIAPYRNQILALRRGIWKT--GLRQDGVEISTVDGFQGREKEIMIFSCVRSPEERSRGSYGSQKGHNSIGFMSDWRRLNVAITRAKYSMWIIGHAGVLRQSEEWRELINDSKRRGAFV 801
P+ + IMVGDP QLP T+ S A + Y QSLF R+++ P +LD QYRMHPSI+ F S+ FY G+L+ P + ++ + + +H+L+ APY F + +GR + A TMS +N E+ I L+ L R F N +DF G++G+I+PYR Q+ +R+ + G+ ++ +T+DGFQG+EKEI++ SCVR+ + +S S+GF+ D+RR+NVA+TRAK S+W++GH L +S+ WR+LI D+K R
Sbjct: 1603 PLRYGGKRCIMVGDPNQLPPTVLSGAASNFKYNQSLFVRMEKNSSP-YLLDVQYRMHPSISKFPSSEFYQGRLKDGPGM-DILNKRPWHQLEPLAPYKFFDIISGRQEQNA-----KTMSYTNMEEIRVAIELVDYLFRKFDNKIDFTGKIGIISPYREQMQKMRKEFARYFGGMINKSIDFNTIDGFQGQEKEIILISCVRADDTKS-----------SVGFLKDFRRMNVALTRAKTSIWVLGHQRSLAKSKLWRDLIEDAKDRSCLA 1854
BLAST of mRNA_H-elongata_contig17383.4513.1 vs. uniprot
Match: A0A0L8RF93_SACEU (SEN1-like protein n=1 Tax=Saccharomyces eubayanus TaxID=1080349 RepID=A0A0L8RF93_SACEU) HSP 1 Score: 205 bits (522), Expect = 1.620e-56 Identity = 110/266 (41.35%), Postives = 166/266 (62.41%), Query Frame = 1
Query: 1 PINTIERAVIMVGDPAQLPATIFSRKAKDANYEQSLFQRLQRGGHPKMMLDTQYRMHPSIASFASNRFYNGQLRSAPSVTEVSHGQIFHRLQRFAPYLFHHVAAGRLRRGAAGEGGSTMSLSNPAEVEYIIFLLKDLLRSFPN-MDFNGRVGVIAPYRNQILALRRGIWKT--GLRQDGVEISTVDGFQGREKEIMIFSCVRSPEERSRGSYGSQKGHNSIGFMSDWRRLNVAITRAKYSMWIIGHAGVLRQSEEWRELINDSKRR 789
P+ + IMVGDP QLP T+ S A + Y QSLF R+++ P +LD QYRMHPSI+ F S+ FY G+L+ P + +V + + +H + APY F + +GR + + TMS +N EV I L+ L R+F N +DF G++G+I+PYR Q+ +RR + G+ ++ +T+DGFQG+EKEI++ SCVR+ + +S S+GF+ D+RR+NVA+TRAK S+W++GH L +S+ W+ LI D+KRR
Sbjct: 1592 PLRYGGKRCIMVGDPNQLPPTVLSGAASNLKYNQSLFVRMEKNSSP-YLLDVQYRMHPSISKFPSSEFYQGRLKDGPGM-DVLNKRPWHECKPLAPYKFFDIISGRQEQNS-----KTMSYTNMEEVRVAIELIDFLFRNFDNKIDFTGKIGIISPYREQMQRMRREFARYFGGMINKSIDFNTIDGFQGQEKEIILISCVRADDTKS-----------SVGFLKDFRRMNVALTRAKTSIWVLGHQKSLTKSKLWKHLIEDAKRR 1839
BLAST of mRNA_H-elongata_contig17383.4513.1 vs. uniprot
Match: A0A329SZH2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SZH2_9STRA) HSP 1 Score: 205 bits (521), Expect = 2.130e-56 Identity = 118/269 (43.87%), Postives = 167/269 (62.08%), Query Frame = 1
Query: 25 VIMVGDPAQLPATIFSRKAKDANYEQSLFQRLQRGGHPKMMLDTQYRMHPSIASFASNRFYNGQLRSAPSVTEVSHGQIFHRLQRFAPYLFHHVAAGRLRRGAAGEGGSTMSLSNPAEVEYIIFLLKDLLRSFPNMDFNGRVGVIAPYRNQILALRRGIWKTGL---RQDGVEISTVDGFQGREKEIMIFSCVRSP-------EERSRGSYGSQKGHNSIGFMSDWRRLNVAITRAKYSMWIIGHAGVLRQSEEWRELINDSKRRGAFV 801
V+MVGD QLPAT+ S+ Y++SL QRL G P ++L+ QYRMHP I+ F S FY+G+L ++ E + Q +HR + F P LF V +GA + + SL N +EVE +I L++ LL FP +D+ R+GVIAPY+ QI +R I K R G+E++TVDGFQGREKEI+I+SCVR+ ++RSRG+ + G F +D RR+NVAITRAK S+WI+G++ +L+QS WR LI +K ++
Sbjct: 1373 VMMVGDHRQLPATVISKNLVSMGYDRSLQQRLVENGSPVLLLNQQYRMHPEISEFPSTYFYDGRLVQNENMREWT-AQDYHRDRAFKPLLFLDV------QGAQSQVSGSTSLRNLSEVEAVIQLVRRLLTKFPRIDWKKRIGVIAPYKQQIYEVRGAIGKLEAEFERHLGIEVNTVDGFQGREKEIIIYSCVRTSYGGRRKKKKRSRGN--DEDGDILDAFWADERRMNVAITRAKSSLWIVGNSTLLKQSRAWRALIQHTKDHSRYI 1632
BLAST of mRNA_H-elongata_contig17383.4513.1 vs. uniprot
Match: A0A376B398_9ASCO (Related to Helicase SEN1 n=2 Tax=Saccharomycodes ludwigii TaxID=36035 RepID=A0A376B398_9ASCO) HSP 1 Score: 203 bits (517), Expect = 7.570e-56 Identity = 109/268 (40.67%), Postives = 160/268 (59.70%), Query Frame = 1
Query: 1 PINTIERAVIMVGDPAQLPATIFSRKAKDANYEQSLFQRLQRGGHPKMMLDTQYRMHPSIASFASNRFYNGQLRSAPSVTEVSHGQIFHRLQRFAPYLFHHVAAGRLRRGAAGEGGSTMSLSNPAEVEYIIFLLKDLLRSFPNMDFNGRVGVIAPYRNQILALRRGIWKTGLRQ--DGVEISTVDGFQGREKEIMIFSCVRSPEERSRGSYGSQKGHNSIGFMSDWRRLNVAITRAKYSMWIIGHAGVLRQSEEWRELINDSKRRGAF 798
P+ + IMVGDP QLP T+ S A Y QSLF R+++ P +LD QYRM+P I+ F S+ FYNG+L+ P++ ++ + +HR + F PY F + G +R A TMS NP E++ + L+ L P DF G++G+I+PYR Q+ L+R RQ + V+ +T+DGFQG+EKE++I SCVR+ + + G +GF+ D+RR+NVA+TRAK SMWI+GH L ++ WR+LI D+K R
Sbjct: 1595 PLRYGAKRCIMVGDPNQLPPTVLSGAASSFKYNQSLFVRMEKHSKP-YLLDVQYRMNPLISRFPSSEFYNGELKDGPNLDVITKRE-WHRYEPFTPYKFFDIIDGYEKRNA-----KTMSFVNPEEIKVALELVGTLFSKLPRYDFKGKIGIISPYREQMFQLKRSFINEFGRQILNEVDFNTIDGFQGQEKEVIIISCVRADDNSNAG----------VGFLKDFRRMNVALTRAKCSMWILGHHKSLVKNRLWRDLIMDAKERSCL 1845 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17383.4513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17383.4513.1 >prot_H-elongata_contig17383.4513.1 ID=prot_H-elongata_contig17383.4513.1|Name=mRNA_H-elongata_contig17383.4513.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=261bp MVGDPAQLPATIFSRKAKDANYEQSLFQRLQRGGHPKMMLDTQYRMHPSIback to top mRNA from alignment at H-elongata_contig17383:5180..7176- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17383.4513.1 ID=mRNA_H-elongata_contig17383.4513.1|Name=mRNA_H-elongata_contig17383.4513.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1997bp|location=Sequence derived from alignment at H-elongata_contig17383:5180..7176- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17383:5180..7176- >mRNA_H-elongata_contig17383.4513.1 ID=mRNA_H-elongata_contig17383.4513.1|Name=mRNA_H-elongata_contig17383.4513.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1566bp|location=Sequence derived from alignment at H-elongata_contig17383:5180..7176- (Himanthalia elongata Himel1 dioecious)back to top |