mRNA_H-elongata_contig17383.4513.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17383.4513.1
Unique NamemRNA_H-elongata_contig17383.4513.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17383.4513.1 vs. uniprot
Match: D8LE51_ECTSI (SEN1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE51_ECTSI)

HSP 1 Score: 405 bits (1041), Expect = 3.090e-128
Identity = 198/270 (73.33%), Postives = 226/270 (83.70%), Query Frame = 1
Query:    1 PINTIERAVIMVGDPAQLPATIFSRKAKDANYEQSLFQRLQRGGHPKMMLDTQYRMHPSIASFASNRFYNGQLRSAPSVTEVSHGQIFHRLQRFAPYLFHHVAAGRLRRGAAGEGGSTMSLSNPAEVEYIIFLLKDLLRSFPNMDFNGRVGVIAPYRNQILALRRGIWKTGLRQDGVEISTVDGFQGREKEIMIFSCVRSPEERSRGSYGSQKGHNSIGFMSDWRRLNVAITRAKYSMWIIGHAGVLRQSEEWRELINDSKRRGAFVDHS 810
            P+    RAVIMVGDPAQLPATIFS+ A+ ANY QSLF RLQRGGHPK MLDTQYRMHP IASFAS RFY+G LRSAP+VTE SHGQ+FHRL RFAPYLFH+V+ GRL+RG  G GG+  SLSNP EV YI  LL+DL+ +FP  DFNGR+GVIAPYRNQI AL+RG+W TGLR DGVE+STVDGFQGREK+IMIFSCVR+PE +  G  GS  G   IGF+ DWRRLNVAITRAK++MWI+GHAGVL+QS +WRELINDSK+R AF+D S
Sbjct:  793 PLKYNPRAVIMVGDPAQLPATIFSKDAQRANYAQSLFLRLQRGGHPKTMLDTQYRMHPDIASFASTRFYSGLLRSAPTVTEASHGQVFHRLPRFAPYLFHNVSGGRLKRGGEGYGGAK-SLSNPTEVSYITSLLQDLITTFPGTDFNGRIGVIAPYRNQIRALQRGMWSTGLRHDGVEVSTVDGFQGREKDIMIFSCVRAPELQRSGDSGSSSG-GGIGFLDDWRRLNVAITRAKFAMWIVGHAGVLKQSTDWRELINDSKKRNAFIDSS 1060          
BLAST of mRNA_H-elongata_contig17383.4513.1 vs. uniprot
Match: A0A6H5JS06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS06_9PHAE)

HSP 1 Score: 402 bits (1034), Expect = 1.460e-126
Identity = 196/270 (72.59%), Postives = 225/270 (83.33%), Query Frame = 1
Query:    1 PINTIERAVIMVGDPAQLPATIFSRKAKDANYEQSLFQRLQRGGHPKMMLDTQYRMHPSIASFASNRFYNGQLRSAPSVTEVSHGQIFHRLQRFAPYLFHHVAAGRLRRGAAGEGGSTMSLSNPAEVEYIIFLLKDLLRSFPNMDFNGRVGVIAPYRNQILALRRGIWKTGLRQDGVEISTVDGFQGREKEIMIFSCVRSPEERSRGSYGSQKGHNSIGFMSDWRRLNVAITRAKYSMWIIGHAGVLRQSEEWRELINDSKRRGAFVDHS 810
            P+    RAVIMVGDPAQLPATIFS+ A+ ANY QSLF RLQRGGHPK MLDTQYRMHP IASFAS RFY+G LRSAP+VTE SHGQ+FHRL RFAPYLFH+V+ GRL+RG  G GG+  SLSNP EV YI  LL DL+ +FP  DFNG++GVIAPYRNQI AL+RG+W TGLR DGVE+STVDGFQGREK+IMIFSCVR+PE +  G  GS  G   +GF+ DWRRLNVAITRAK++MWI+GHAGVL+QS +WRELINDSK+R AF+D S
Sbjct:  984 PLKYNPRAVIMVGDPAQLPATIFSKDAQRANYAQSLFLRLQRGGHPKTMLDTQYRMHPDIASFASTRFYSGLLRSAPTVTEASHGQVFHRLPRFAPYLFHNVSGGRLKRGGEGYGGAK-SLSNPTEVSYITSLLHDLITTFPGTDFNGKIGVIAPYRNQIRALQRGMWSTGLRHDGVEVSTVDGFQGREKDIMIFSCVRAPELQRSGDSGSSSG-GGVGFLDDWRRLNVAITRAKFAMWIVGHAGVLKQSTDWRELINDSKKRDAFIDSS 1251          
BLAST of mRNA_H-elongata_contig17383.4513.1 vs. uniprot
Match: A0A482SHI2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHI2_9ARCH)

HSP 1 Score: 212 bits (539), Expect = 3.130e-62
Identity = 124/274 (45.26%), Postives = 161/274 (58.76%), Query Frame = 1
Query:    1 PINTIERAVIMVGDPAQLPATIFSRKAKDANYEQSLFQRLQRGGHPKMMLDTQYRMHPSIASFASNRFYNGQLRSAPSVTEV---SHGQIFHRLQRFAPYLFHHVAAGRLRRGAAGEGGSTMSLSNPAEVEYIIFLLKDLLRSFPNMDFNGRVGVIAPYRNQ----ILALRRGIWKTGLRQDGVEISTVDGFQGREKEIMIFSCVRSPEERSRGSYGSQKGHNSIGFMSDWRRLNVAITRAKYSMWIIGHAGVLRQSEEWRELINDSKRRGAFV 801
            P     + V+MVGDP QLPAT+FSR  K+ANY QSLFQRLQR G P  ML+TQYRMHP+IA F S R+YN  L + P V      S G    + + F P +FH V  GR +     EG    S+ N AE  Y++ L   L+R +P    N  +G+IAPYR Q       L+  +          EISTVDGFQGREK+I+IFSCVR+P   S      + G   IGF+ +W+RLNVAITRA++ +W++GH   L++  EW  LI   + + A V
Sbjct:  111 PFKYNPQLVVMVGDPCQLPATVFSRLCKEANYSQSLFQRLQRSGVPVAMLETQYRMHPAIAEFPSMRYYNNFLVTDPHVAATVPNSKGYYQDKSELFRPIVFHDVMYGREKL----EG---FSMYNTAEARYVVDLFCTLIRDYPKEKTN--IGIIAPYRAQRKLITRMLKEHLGGKVYNALDTEISTVDGFQGREKDIIIFSCVRAPTGNSSKQLIDRSGAG-IGFLKEWQRLNVAITRARFGLWLVGHKATLQKDGEWDALIRFIEAKKAVV 374          
BLAST of mRNA_H-elongata_contig17383.4513.1 vs. uniprot
Match: UPI000D1CB6B0 (probable helicase MAGATAMA 3 n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1CB6B0)

HSP 1 Score: 201 bits (512), Expect = 1.120e-58
Identity = 108/256 (42.19%), Postives = 157/256 (61.33%), Query Frame = 1
Query:   28 IMVGDPAQLPATIFSRKAKDANYEQSLFQRLQRGGHPKMMLDTQYRMHPSIASFASNRFYNGQLRSAPSVTEVSHGQIFHRLQRFAPYLFHHVAAGRLRRGAAGEGGSTMSLSNPAEVEYIIFLLKDLLRSFPNMDFNGRVGVIAPYRNQILALRRGIWKTGLRQDGVEISTVDGFQGREKEIMIFSCVRSPEERSRGSYG-SQKGHNSIGFMSDWRRLNVAITRAKYSMWIIGHAGVLRQSEEWRELINDSKRRG 792
            I++GDP QLPAT+ S  A    ++ S+F+R Q+ G+P  ML TQYRMHP I SF S  +Y GQL+   +V   +    FHR +RF PY F  +  G+ R G      S  SL+NP E E+I  LL+ L   +P     GR+GVI PY+ Q   L+  +        G++++TVD FQGRE +I++ S VR+       S+G SQ G   +GF++D RR+NVA+TRAK+S+W++G+A  L ++ +W+ L+ D +RRG
Sbjct:  169 ILIGDPKQLPATVLSVPASRLLFDCSMFERFQKNGYPVSMLTTQYRMHPEIRSFPSTHYYGGQLKDGSTVLHGNRSAPFHRERRFEPYRFFDIRDGQERPG------SMQSLTNPDEAEFIFQLLRVLKERYPEEVRPGRIGVITPYQEQRKVLQENMRSL---HSGIDVNTVDSFQGREADIIVLSTVRA-------SFGESQAG---VGFLADVRRMNVALTRAKFSLWVVGNARTLERNSDWKALLQDCRRRG 405          
BLAST of mRNA_H-elongata_contig17383.4513.1 vs. uniprot
Match: A0A7S0SVB8_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SVB8_9STRA)

HSP 1 Score: 204 bits (520), Expect = 1.320e-57
Identity = 118/259 (45.56%), Postives = 162/259 (62.55%), Query Frame = 1
Query:   25 VIMVGDPAQLPATIFSRKAKDANYEQSLFQRLQRGGHPKMMLDTQYRMHPSIASFASNRFYNGQLRSAPSVTEVSHG---QIFHRLQRFAPYLFHHVAAGRLRRGAAGEGGSTMSLSNPAEVEYIIFLLKDLLRSFPNMDFNGRVGVIAPYRNQILALRRGIWKTGLRQDGVEISTVDGFQGREKEIMIFSCVRSPEERSRGSYGSQKG-HNSIGFMSDWRRLNVAITRAKYSMWIIGHAGVLRQSEEWRELINDSKRR 789
            VIMVGDP QLPA I S+K+K+ NY QSLF+RLQ+ G    ML+TQYRMHP IA ++S RFYN QL +  S+ E +       FH  ++F P++FH+V  G        +     S  N  E  YI  + ++L R +P+   N  +G+IAPY  Q   L++   +    +  VEIST+DGFQGREK+I+ FSCVR+P +    SY + K   N+IGF+ + +RLNVAITRA+ ++WI+GHA  LR   EW +L+N  K R
Sbjct:  423 VIMVGDPCQLPAVILSKKSKECNYHQSLFERLQKSGVEMTMLNTQYRMHPYIADYSSFRFYNNQLLTDISLLENAERVRPYYFHPSEKFKPFVFHNVIKGY-------QTIENTSYKNIPEALYIAEMYQELKRFYPHCLDN--IGIIAPYSAQRKLLKQIFKERFGYKCNVEISTIDGFQGREKDIIFFSCVRAPNK----SYRNDKNADNNIGFLKEKQRLNVAITRARNALWIVGHADTLRGDSEWEQLLNYMKAR 668          
BLAST of mRNA_H-elongata_contig17383.4513.1 vs. uniprot
Match: A0A6A3M5L9_9STRA (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3M5L9_9STRA)

HSP 1 Score: 206 bits (525), Expect = 6.200e-57
Identity = 115/266 (43.23%), Postives = 165/266 (62.03%), Query Frame = 1
Query:   25 VIMVGDPAQLPATIFSRKAKDANYEQSLFQRLQRGGHPKMMLDTQYRMHPSIASFASNRFYNGQLRSAPSVTEVSHGQIFHRLQRFAPYLFHHVAAGRLRRGAAGEGGSTMSLSNPAEVEYIIFLLKDLLRSFPNMDFNGRVGVIAPYRNQILALRRGIWKTGLRQD---GVEISTVDGFQGREKEIMIFSCVRSPE----ERSRGSYGSQKGHNSIGFMSDWRRLNVAITRAKYSMWIIGHAGVLRQSEEWRELINDSKRRGAFV 801
            V++VGD  QLPAT+ S+K     Y++SL QRL     P ++L  QYRMHP IA F S  FY G+L    ++   +  Q +HR + F P LF  V      +GA  +   + SL N +EVE ++ LL+ LL+ FP++++  R+GVIAPY+ QI  +R  I K     D   G+E++TVDGFQGREKEI+I+SCVR+      ++ R S+G+ +      F +D RR+NVAITRAK S+WI+G++ +L+QS  WR LI  +K    F+
Sbjct: 1359 VVLVGDHRQLPATVISKKLVSMRYDRSLQQRLVENKSPVLLLTQQYRMHPDIAEFPSAHFYGGRLVQDDNMRNWT-AQDYHRDRAFKPLLFLDV------QGAQSQVSGSTSLRNMSEVETVVQLLRRLLKKFPHIEWKKRIGVIAPYKQQIYEVRGAIGKLESEFDRPLGIEVNTVDGFQGREKEIIIYSCVRTSHGGRRKKKRKSHGNDEEDVLDAFWADERRMNVAITRAKSSLWIVGNSNLLKQSRAWRALIKHTKDHNRFI 1617          
BLAST of mRNA_H-elongata_contig17383.4513.1 vs. uniprot
Match: SEN1_YEAST (Helicase SEN1 n=14 Tax=Saccharomyces TaxID=4930 RepID=SEN1_YEAST)

HSP 1 Score: 206 bits (524), Expect = 8.740e-57
Identity = 109/270 (40.37%), Postives = 167/270 (61.85%), Query Frame = 1
Query:    1 PINTIERAVIMVGDPAQLPATIFSRKAKDANYEQSLFQRLQRGGHPKMMLDTQYRMHPSIASFASNRFYNGQLRSAPSVTEVSHGQIFHRLQRFAPYLFHHVAAGRLRRGAAGEGGSTMSLSNPAEVEYIIFLLKDLLRSFPN-MDFNGRVGVIAPYRNQILALRRGIWKT--GLRQDGVEISTVDGFQGREKEIMIFSCVRSPEERSRGSYGSQKGHNSIGFMSDWRRLNVAITRAKYSMWIIGHAGVLRQSEEWRELINDSKRRGAFV 801
            P+    +  IMVGDP QLP T+ S  A +  Y QSLF R+++   P  +LD QYRMHPSI+ F S+ FY G+L+  P + ++ + + +H+L+  APY F  + +GR  + A      TMS +N  E+   I L+  L R F N +DF G++G+I+PYR Q+  +R+   +   G+    ++ +T+DGFQG+EKEI++ SCVR+ + +S           S+GF+ D+RR+NVA+TRAK S+W++GH   L +S+ WR+LI D+K R    
Sbjct: 1603 PLRYGGKRCIMVGDPNQLPPTVLSGAASNFKYNQSLFVRMEKNSSP-YLLDVQYRMHPSISKFPSSEFYQGRLKDGPGM-DILNKRPWHQLEPLAPYKFFDIISGRQEQNA-----KTMSYTNMEEIRVAIELVDYLFRKFDNKIDFTGKIGIISPYREQMQKMRKEFARYFGGMINKSIDFNTIDGFQGQEKEIILISCVRADDTKS-----------SVGFLKDFRRMNVALTRAKTSIWVLGHQRSLAKSKLWRDLIEDAKDRSCLA 1854          
BLAST of mRNA_H-elongata_contig17383.4513.1 vs. uniprot
Match: A0A0L8RF93_SACEU (SEN1-like protein n=1 Tax=Saccharomyces eubayanus TaxID=1080349 RepID=A0A0L8RF93_SACEU)

HSP 1 Score: 205 bits (522), Expect = 1.620e-56
Identity = 110/266 (41.35%), Postives = 166/266 (62.41%), Query Frame = 1
Query:    1 PINTIERAVIMVGDPAQLPATIFSRKAKDANYEQSLFQRLQRGGHPKMMLDTQYRMHPSIASFASNRFYNGQLRSAPSVTEVSHGQIFHRLQRFAPYLFHHVAAGRLRRGAAGEGGSTMSLSNPAEVEYIIFLLKDLLRSFPN-MDFNGRVGVIAPYRNQILALRRGIWKT--GLRQDGVEISTVDGFQGREKEIMIFSCVRSPEERSRGSYGSQKGHNSIGFMSDWRRLNVAITRAKYSMWIIGHAGVLRQSEEWRELINDSKRR 789
            P+    +  IMVGDP QLP T+ S  A +  Y QSLF R+++   P  +LD QYRMHPSI+ F S+ FY G+L+  P + +V + + +H  +  APY F  + +GR  + +      TMS +N  EV   I L+  L R+F N +DF G++G+I+PYR Q+  +RR   +   G+    ++ +T+DGFQG+EKEI++ SCVR+ + +S           S+GF+ D+RR+NVA+TRAK S+W++GH   L +S+ W+ LI D+KRR
Sbjct: 1592 PLRYGGKRCIMVGDPNQLPPTVLSGAASNLKYNQSLFVRMEKNSSP-YLLDVQYRMHPSISKFPSSEFYQGRLKDGPGM-DVLNKRPWHECKPLAPYKFFDIISGRQEQNS-----KTMSYTNMEEVRVAIELIDFLFRNFDNKIDFTGKIGIISPYREQMQRMRREFARYFGGMINKSIDFNTIDGFQGQEKEIILISCVRADDTKS-----------SVGFLKDFRRMNVALTRAKTSIWVLGHQKSLTKSKLWKHLIEDAKRR 1839          
BLAST of mRNA_H-elongata_contig17383.4513.1 vs. uniprot
Match: A0A329SZH2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SZH2_9STRA)

HSP 1 Score: 205 bits (521), Expect = 2.130e-56
Identity = 118/269 (43.87%), Postives = 167/269 (62.08%), Query Frame = 1
Query:   25 VIMVGDPAQLPATIFSRKAKDANYEQSLFQRLQRGGHPKMMLDTQYRMHPSIASFASNRFYNGQLRSAPSVTEVSHGQIFHRLQRFAPYLFHHVAAGRLRRGAAGEGGSTMSLSNPAEVEYIIFLLKDLLRSFPNMDFNGRVGVIAPYRNQILALRRGIWKTGL---RQDGVEISTVDGFQGREKEIMIFSCVRSP-------EERSRGSYGSQKGHNSIGFMSDWRRLNVAITRAKYSMWIIGHAGVLRQSEEWRELINDSKRRGAFV 801
            V+MVGD  QLPAT+ S+      Y++SL QRL   G P ++L+ QYRMHP I+ F S  FY+G+L    ++ E +  Q +HR + F P LF  V      +GA  +   + SL N +EVE +I L++ LL  FP +D+  R+GVIAPY+ QI  +R  I K      R  G+E++TVDGFQGREKEI+I+SCVR+        ++RSRG+   + G     F +D RR+NVAITRAK S+WI+G++ +L+QS  WR LI  +K    ++
Sbjct: 1373 VMMVGDHRQLPATVISKNLVSMGYDRSLQQRLVENGSPVLLLNQQYRMHPEISEFPSTYFYDGRLVQNENMREWT-AQDYHRDRAFKPLLFLDV------QGAQSQVSGSTSLRNLSEVEAVIQLVRRLLTKFPRIDWKKRIGVIAPYKQQIYEVRGAIGKLEAEFERHLGIEVNTVDGFQGREKEIIIYSCVRTSYGGRRKKKKRSRGN--DEDGDILDAFWADERRMNVAITRAKSSLWIVGNSTLLKQSRAWRALIQHTKDHSRYI 1632          
BLAST of mRNA_H-elongata_contig17383.4513.1 vs. uniprot
Match: A0A376B398_9ASCO (Related to Helicase SEN1 n=2 Tax=Saccharomycodes ludwigii TaxID=36035 RepID=A0A376B398_9ASCO)

HSP 1 Score: 203 bits (517), Expect = 7.570e-56
Identity = 109/268 (40.67%), Postives = 160/268 (59.70%), Query Frame = 1
Query:    1 PINTIERAVIMVGDPAQLPATIFSRKAKDANYEQSLFQRLQRGGHPKMMLDTQYRMHPSIASFASNRFYNGQLRSAPSVTEVSHGQIFHRLQRFAPYLFHHVAAGRLRRGAAGEGGSTMSLSNPAEVEYIIFLLKDLLRSFPNMDFNGRVGVIAPYRNQILALRRGIWKTGLRQ--DGVEISTVDGFQGREKEIMIFSCVRSPEERSRGSYGSQKGHNSIGFMSDWRRLNVAITRAKYSMWIIGHAGVLRQSEEWRELINDSKRRGAF 798
            P+    +  IMVGDP QLP T+ S  A    Y QSLF R+++   P  +LD QYRM+P I+ F S+ FYNG+L+  P++  ++  + +HR + F PY F  +  G  +R A      TMS  NP E++  + L+  L    P  DF G++G+I+PYR Q+  L+R       RQ  + V+ +T+DGFQG+EKE++I SCVR+ +  + G          +GF+ D+RR+NVA+TRAK SMWI+GH   L ++  WR+LI D+K R   
Sbjct: 1595 PLRYGAKRCIMVGDPNQLPPTVLSGAASSFKYNQSLFVRMEKHSKP-YLLDVQYRMNPLISRFPSSEFYNGELKDGPNLDVITKRE-WHRYEPFTPYKFFDIIDGYEKRNA-----KTMSFVNPEEIKVALELVGTLFSKLPRYDFKGKIGIISPYREQMFQLKRSFINEFGRQILNEVDFNTIDGFQGQEKEVIIISCVRADDNSNAG----------VGFLKDFRRMNVALTRAKCSMWILGHHKSLVKNRLWRDLIMDAKERSCL 1845          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17383.4513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE51_ECTSI3.090e-12873.33SEN1 protein n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JS06_9PHAE1.460e-12672.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482SHI2_9ARCH3.130e-6245.26Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
UPI000D1CB6B01.120e-5842.19probable helicase MAGATAMA 3 n=1 Tax=Selaginella m... [more]
A0A7S0SVB8_9STRA1.320e-5745.56Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A6A3M5L9_9STRA6.200e-5743.23Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
SEN1_YEAST8.740e-5740.37Helicase SEN1 n=14 Tax=Saccharomyces TaxID=4930 Re... [more]
A0A0L8RF93_SACEU1.620e-5641.35SEN1-like protein n=1 Tax=Saccharomyces eubayanus ... [more]
A0A329SZH2_9STRA2.130e-5643.87Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A376B398_9ASCO7.570e-5640.67Related to Helicase SEN1 n=2 Tax=Saccharomycodes l... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17383contigH-elongata_contig17383:5180..7176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score399.1
Seed ortholog evalue1.6e-108
Seed eggNOG ortholog2880.D8LE51
KEGG koko:K10706
EggNOG free text desc.positive regulation of termination of RNA polymerase II transcription, poly(A)-coupled
EggNOG OGsCOG1112@1,KOG1801@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Hectar predicted targeting categoryother localisation
Exons4
Model size813
Cds size783
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17383.4513.1prot_H-elongata_contig17383.4513.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17383 5180..7146 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930009.7997184-CDS-H-elongata_contig17383:5179..54291622930009.7997184-CDS-H-elongata_contig17383:5179..5429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17383 5180..5429 -
1691679244.5379617-CDS-H-elongata_contig17383:5179..54291691679244.5379617-CDS-H-elongata_contig17383:5179..5429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17383 5180..5429 -
1622930009.8168688-CDS-H-elongata_contig17383:5764..59231622930009.8168688-CDS-H-elongata_contig17383:5764..5923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17383 5765..5923 -
1691679244.557493-CDS-H-elongata_contig17383:5764..59231691679244.557493-CDS-H-elongata_contig17383:5764..5923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17383 5765..5923 -
1622930009.8347754-CDS-H-elongata_contig17383:6537..67201622930009.8347754-CDS-H-elongata_contig17383:6537..6720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17383 6538..6720 -
1691679244.5659575-CDS-H-elongata_contig17383:6537..67201691679244.5659575-CDS-H-elongata_contig17383:6537..6720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17383 6538..6720 -
1622930009.8546672-CDS-H-elongata_contig17383:6955..71461622930009.8546672-CDS-H-elongata_contig17383:6955..7146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17383 6956..7146 -
1691679244.5838006-CDS-H-elongata_contig17383:6955..71461691679244.5838006-CDS-H-elongata_contig17383:6955..7146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17383 6956..7146 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930009.8676476-UTR-H-elongata_contig17383:7146..71761622930009.8676476-UTR-H-elongata_contig17383:7146..7176Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17383 7147..7176 -
1691679244.6004992-UTR-H-elongata_contig17383:7146..71761691679244.6004992-UTR-H-elongata_contig17383:7146..7176Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17383 7147..7176 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17383.4513.1

>prot_H-elongata_contig17383.4513.1 ID=prot_H-elongata_contig17383.4513.1|Name=mRNA_H-elongata_contig17383.4513.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=261bp
MVGDPAQLPATIFSRKAKDANYEQSLFQRLQRGGHPKMMLDTQYRMHPSI
ASFASNRFYNGQLRSAPSVTEVSHGQIFHRLQRFAPYLFHHVAAGRLRRG
AAGEGGSTMSLSNPAEVEYIIFLLKDLLRSFPNMDFNGRVGVIAPYRNQI
LALRRGIWKTGLRQDGVEISTVDGFQGREKEIMIFSCVRSPEERSRGSYG
SQKGHNSIGFMSDWRRLNVAITRAKYSMWIIGHAGVLRQSEEWRELINDS
KRRGAFVDHSD
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mRNA from alignment at H-elongata_contig17383:5180..7176-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17383.4513.1 ID=mRNA_H-elongata_contig17383.4513.1|Name=mRNA_H-elongata_contig17383.4513.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1997bp|location=Sequence derived from alignment at H-elongata_contig17383:5180..7176- (Himanthalia elongata Himel1 dioecious)
CCCATCAATACCATCGAAAGGGCCGTAATTATGGTCGGCGACCCCGCGCA GCTCCCGGCGACGATCTTCTCTCGGAAAGCCAAGGACGCCAACTACGAGC AAAGCCTCTTCCAAAGATTGCAGCGGGGGGGACATCCCAAGATGATGCTC GACACGCAGTACCGCATGCACCCCAGCATAGCGTCCTTCGCATCCAACCG CTTTTACAACGGCCAACTCAGGTCAGGTCAGAGTTCAACGCCATGCATGT GTGATAAGGAGTTTAGCTCGAAACGCGTCACGAAATTGTTTTATCTACGT TTGGGTGTATATCGACGACACAAGTCGATGCTCTGAGCGCCGACTGCCAG TGCTTGTCCCTTGTCGCTTTTTGCTGCTACATGGTTTTACGTCTCTTGCT ACAGACCACTTCATGTTCGTTGTACTTTTATAATGATTTCCATATCTTAC GTTCAGGTCTGCGCCCTCGGTCACGGAAGTTTCCCACGGACAAATCTTCC ATCGCCTTCAACGGTTTGCGCCCTATCTTTTCCACCACGTGGCCGCGGGC CGTCTCCGGCGAGGGGCGGCGGGGGAGGGAGGTTCGACGATGTCGCTATC GAATCCTGCCGAAGTTGAATACATAATATTCCTCCTCAAGTGAGATACCG AAGCGAAGCGCTTAATCGTTTTGGAACCGTCCCCGTTAGTCCCCGGGTGA ATATTATTTGCCACTTTGCACCAGGCCGTAAACCAGATTGGATAGACCGT AAACAGGACTCAGTTCCCTACCCAAACCTCCCAAATGCTGCAACAGCTTT GTATACAGCCTTCCCCCGGGTGGACATCGCCTGACTGACCAAAACTAACT CCGGGCCGTAAACCTTACTATAATTAATCGGTTTGATTTGAGGGGGCAGG GCTCGATCATACGTCTGGCCCCGAGAATTTATTATAGCCCTTCAGCCTTT TTATGTTTGTCCAGGGCGAAAAAGTAAACGCCATCACGCGCCCTGACGAT GTTGCTCGTACCTACATTTTCCCCCGTTGTTGCTTCCGCATCAACAACCG TCATGGACGCCCAATAATATCAGATGATTGTTTTAGTTGTTACGCCAAAG TTCCACCCATGGAACTGTTGTGTGGGCATCTTCAGAGAGCTGACTCTTAC GCTCCGTCTCTACCACGCTGGTCTGTCTACAAAGTATCGTGAACCTACAG TACAATATTTGAATATCCCCATCTGCATTATCTCGACCCATGGGTTTCCT CAGGGACTTGTTGCGTTCCTTCCCCAATATGGACTTCAACGGGAGAGTGG GCGTTATCGCGCCCTACCGGAACCAGATATTGGCTCTACGGAGAGGAATT TGGAAGACAGGGCTCAGGCAAGATGGAGTGGAGATATCGACTGTGGATGG ATTCCAAGGGAGGTGAGGTTCTAATGCCCAGTTCGCGATACTGAAAACCA ACTGAATACTAGTGAGACCTCGATTGGGATGTGATGGAGCGGCCAGTTGA TGCAAAACCTTTTTTGTTTTGTTTGTTTTTTCCCCACAAATAGGTCCGAT CTCTAGTCGATTATAACTTGTAATCGAGTATTACGCTGTTCGCCTTAGCC AGAGAATAGCGTCGATTTTCGAAGAGATTAGGGTGTTCCACGAGTTGCGT TTTGGCTGAAATTGGTTCCCCTTCATTTTTAGTTCAATCGTACTGACGGA AGCAGTTGTTCCATCTTTGACTTGTTACTTCCAACCCGCCACGTTAGGGA AAAGGAGATTATGATATTCTCCTGTGTGCGTTCTCCTGAAGAAAGGTCGA GAGGAAGCTACGGTTCGCAGAAAGGGCACAACAGCATCGGTTTCATGAGT GATTGGCGACGGCTTAACGTTGCCATCACGAGGGCCAAGTATTCCATGTG GATCATAGGGCACGCAGGGGTGTTGCGGCAGAGCGAAGAGTGGCGAGAAC TCATCAACGACTCCAAGCGAAGGGGTGCCTTCGTCGACCACTCAGAT
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Coding sequence (CDS) from alignment at H-elongata_contig17383:5180..7176-

>mRNA_H-elongata_contig17383.4513.1 ID=mRNA_H-elongata_contig17383.4513.1|Name=mRNA_H-elongata_contig17383.4513.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1566bp|location=Sequence derived from alignment at H-elongata_contig17383:5180..7176- (Himanthalia elongata Himel1 dioecious)
ATGGTCGGCGACCCCGCGCAGCTCCCGGCGACGATCTTCTCTCGGAAAGC
CAAGGACGCCAACTACGAGCAAAGCCTCTTCCAAAGATTGCAGCGGGGGG
GACATCCCAAGATGATGCTCGACACGCAGTACCGCATGCACCCCAGCATA
GCGTCCTTCGCATCCAACCGCTTTTACAACGGCCAACTCAGATGGTCGGC
GACCCCGCGCAGCTCCCGGCGACGATCTTCTCTCGGAAAGCCAAGGACGC
CAACTACGAGCAAAGCCTCTTCCAAAGATTGCAGCGGGGGGGACATCCCA
AGATGATGCTCGACACGCAGTACCGCATGCACCCCAGCATAGCGTCCTTC
GCATCCAACCGCTTTTACAACGGCCAACTCAGGTCTGCGCCCTCGGTCAC
GGAAGTTTCCCACGGACAAATCTTCCATCGCCTTCAACGGTTTGCGCCCT
ATCTTTTCCACCACGTGGCCGCGGGCCGTCTCCGGCGAGGGGCGGCGGGG
GAGGGAGGTTCGACGATGTCGCTATCGAATCCTGCCGAAGTTGAATACAT
AATATTCCTCCTCAAGTCTGCGCCCTCGGTCACGGAAGTTTCCCACGGAC
AAATCTTCCATCGCCTTCAACGGTTTGCGCCCTATCTTTTCCACCACGTG
GCCGCGGGCCGTCTCCGGCGAGGGGCGGCGGGGGAGGGAGGTTCGACGAT
GTCGCTATCGAATCCTGCCGAAGTTGAATACATAATATTCCTCCTCAAGG
ACTTGTTGCGTTCCTTCCCCAATATGGACTTCAACGGGAGAGTGGGCGTT
ATCGCGCCCTACCGGAACCAGATATTGGCTCTACGGAGAGGAATTTGGAA
GACAGGGCTCAGGCAAGATGGAGTGGAGATATCGACTGTGGATGGATTCC
AAGGGAGGGACTTGTTGCGTTCCTTCCCCAATATGGACTTCAACGGGAGA
GTGGGCGTTATCGCGCCCTACCGGAACCAGATATTGGCTCTACGGAGAGG
AATTTGGAAGACAGGGCTCAGGCAAGATGGAGTGGAGATATCGACTGTGG
ATGGATTCCAAGGGAGGGAAAAGGAGATTATGATATTCTCCTGTGTGCGT
TCTCCTGAAGAAAGGTCGAGAGGAAGCTACGGTTCGCAGAAAGGGCACAA
CAGCATCGGTTTCATGAGTGATTGGCGACGGCTTAACGTTGCCATCACGA
GGGCCAAGTATTCCATGTGGATCATAGGGCACGCAGGGGTGTTGCGGCAG
AGCGAAGAGTGGCGAGAACTCATCAACGACTCCAAGCGAAGGGGTGCCTT
CGTCGACCACTCAGATGGAAAAGGAGATTATGATATTCTCCTGTGTGCGT
TCTCCTGAAGAAAGGTCGAGAGGAAGCTACGGTTCGCAGAAAGGGCACAA
CAGCATCGGTTTCATGAGTGATTGGCGACGGCTTAACGTTGCCATCACGA
GGGCCAAGTATTCCATGTGGATCATAGGGCACGCAGGGGTGTTGCGGCAG
AGCGAAGAGTGGCGAGAACTCATCAACGACTCCAAGCGAAGGGGTGCCTT
CGTCGACCACTCAGAT
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