mRNA_H-elongata_contig173738.4512.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig173738.4512.1
Unique NamemRNA_H-elongata_contig173738.4512.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig173738.4512.1 vs. uniprot
Match: E2LZP6_MONPE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LZP6_MONPE)

HSP 1 Score: 90.5 bits (223), Expect = 3.890e-19
Identity = 46/97 (47.42%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:    1 VQQHQYIHAMAKRFGVT--KTSIIPSVAGGKALSKSDSPQTEEEVEEMCQIPYREIIGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWREAQKAL 285
            + Q QYI    + FG+T  K +  P +     LSKS SPQT +EVEEM +IPY   +G+L++ ATMTRPDI++ A  LA+FN NPG  HW+  +  L
Sbjct:  335 LSQRQYIINKLEEFGMTDCKPATTP-MTPNLILSKSQSPQTPDEVEEMSEIPYISAVGSLLYLATMTRPDIAYTASVLARFNSNPGMDHWKAVKHVL 430
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BLAST of mRNA_H-elongata_contig173738.4512.1 vs. uniprot
Match: A0A4S4K4A0_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4K4A0_9AGAM)

HSP 1 Score: 85.9 bits (211), Expect = 7.630e-19
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 VQQHQYIHAMAKRFGVTK-TSIIPSVAGGKALSKSDSPQTEEEVEEMCQIPYREIIGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWREAQ 276
            + Q QYI  + +RF ++  T++   +  G  LSK+ +P+  EE+  M  +PYR+++GALM+ A  TRPDIS+A   LA+F+ NPGP HW+ A+
Sbjct:   49 LSQRQYITDILERFEMSNCTTVTTPLPDGHRLSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAK 141
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BLAST of mRNA_H-elongata_contig173738.4512.1 vs. uniprot
Match: UPI001E1BDE4E (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BDE4E)

HSP 1 Score: 85.9 bits (211), Expect = 2.760e-18
Identity = 39/74 (52.70%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:   58 SIIPSVAGGKALSKSDSPQTEEEVEEMCQIPYREIIGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWREAQK 279
            S+      G  LS + SPQT++EVEEM QIPY+E +GAL++ +T TRPDIS+A  Q+AKFN NPG  HW+  ++
Sbjct:    6 SVSTPAEPGLKLSLNMSPQTDKEVEEMKQIPYKEAVGALLYLSTTTRPDISYAVGQVAKFNHNPGVQHWKAVKR 79
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BLAST of mRNA_H-elongata_contig173738.4512.1 vs. uniprot
Match: UPI001E1BA9BB (uncharacterized protein LOC116922675 n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BA9BB)

HSP 1 Score: 87.4 bits (215), Expect = 3.320e-18
Identity = 42/94 (44.68%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:    1 VQQHQYIHAMAKRFGVTKTSIIPSVAG-GKALSKSDSPQTEEEVEEMCQIPYREIIGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWREAQK 279
            + Q   +  + K+F +   + + + A  G  LS + SPQT++EVEEM QIPY+E +GAL++ +T TRPDIS+A  Q+AKFN NPG  HW+  ++
Sbjct:  229 ISQPDAVDTILKKFKMGDCNSVSTPAEPGLKLSLNMSPQTDKEVEEMKQIPYKEAVGALLYLSTTTRPDISYAVGQVAKFNHNPGVQHWKAVKR 322
[Close]
BLAST of mRNA_H-elongata_contig173738.4512.1 vs. uniprot
Match: A0A4S4LBP1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4LBP1_9AGAM)

HSP 1 Score: 86.7 bits (213), Expect = 4.180e-18
Identity = 40/93 (43.01%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:    1 VQQHQYIHAMAKRFGVTK-TSIIPSVAGGKALSKSDSPQTEEEVEEMCQIPYREIIGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWREAQ 276
            + Q QYI  + +RF ++  T++   +  G  LSK+ +P+  EE+  M  +PYR+++GALM+ A  TRPDIS+A   LA+F+ NPGP+HW+ A+
Sbjct:  189 LSQRQYIIDILERFEMSNCTTVTTPLPDGHRLSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPSHWKAAK 281
[Close]
BLAST of mRNA_H-elongata_contig173738.4512.1 vs. uniprot
Match: W4VRP9_9DIPT (Putative retrovirus-related pol polyprotein from transposon tnt (Fragment) n=2 Tax=Corethrella appendiculata TaxID=1370023 RepID=W4VRP9_9DIPT)

HSP 1 Score: 87.4 bits (215), Expect = 4.910e-18
Identity = 40/96 (41.67%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:    1 VQQHQYIHAMAKRFGVTKTSIIPSVAG-GKALSKSDSPQTEEEVEEMCQIPYREIIGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWREAQKAL 285
            + Q  Y+  +  +FG+     + +     + LSK+D P T EE+ EM  +PYRE+IG LM+ +  TRPDISFA ++L++FN NPG  HW  A+  L
Sbjct: 1108 LDQEHYVKEILTKFGMADCKPVTTPLNVSEKLSKADCPNTPEEIREMQNVPYREVIGCLMYLSQCTRPDISFAVNKLSQFNSNPGMKHWLAAKHLL 1203
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BLAST of mRNA_H-elongata_contig173738.4512.1 vs. uniprot
Match: A0A4S4L7S0_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4L7S0_9AGAM)

HSP 1 Score: 85.5 bits (210), Expect = 8.100e-18
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 VQQHQYIHAMAKRFGVTK-TSIIPSVAGGKALSKSDSPQTEEEVEEMCQIPYREIIGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWREAQ 276
            + Q QYI  + +RF ++  T++   +  G  LSK+ +P+  EE+  M  +PYR+++GALM+ A  TRPDIS+A   LA+F+ NPGP HW+ A+
Sbjct:   49 LSQRQYIIDILERFEMSNCTTVTTPLPDGHRLSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAK 141
[Close]
BLAST of mRNA_H-elongata_contig173738.4512.1 vs. uniprot
Match: Q849C0_ASTYP (Reverse transcriptase (Fragment) n=1 Tax=Aster yellows phytoplasma TaxID=35779 RepID=Q849C0_ASTYP)

HSP 1 Score: 82.8 bits (203), Expect = 8.250e-18
Identity = 35/94 (37.23%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:    1 VQQHQYIHAMAKRFGVTKTSIIP-SVAGGKALSKSDSPQTEEEVEEMCQIPYREIIGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWREAQK 279
            + Q  Y+ ++ KRF + + + +   +  G+ LSK  SP+T EE E+M  +PY+E +G+L++AA ++RPD+S+A   +++FN NPG  HW+  ++
Sbjct:   84 IDQRAYLESVLKRFNMDQCNPVSIPINVGERLSKEQSPKTVEEAEKMKNVPYQEAVGSLLFAAQVSRPDLSYAVSCVSRFNKNPGVPHWKAVKR 177
[Close]
BLAST of mRNA_H-elongata_contig173738.4512.1 vs. uniprot
Match: A0A4S4KQD1_9AGAM (DOMON domain-containing protein n=1 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4KQD1_9AGAM)

HSP 1 Score: 86.7 bits (213), Expect = 8.500e-18
Identity = 40/93 (43.01%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:    1 VQQHQYIHAMAKRFGVTK-TSIIPSVAGGKALSKSDSPQTEEEVEEMCQIPYREIIGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWREAQ 276
            + Q QYI  + +RF ++  T++   +  G  LSK+ +P+  EE+  M  +PYR+++GALM+ A  TRPDIS+A   LA+F+ NPGP+HW+ A+
Sbjct:  266 LSQRQYIIDILERFEMSNCTTVTTPLPDGHRLSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPSHWKAAK 358
[Close]
BLAST of mRNA_H-elongata_contig173738.4512.1 vs. uniprot
Match: A0A4V3X9G3_9AGAM (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4V3X9G3_9AGAM)

HSP 1 Score: 86.7 bits (213), Expect = 8.960e-18
Identity = 40/93 (43.01%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:    1 VQQHQYIHAMAKRFGVTK-TSIIPSVAGGKALSKSDSPQTEEEVEEMCQIPYREIIGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWREAQ 276
            + Q QYI  + +RF ++  T++   +  G  LSK+ +P+  EE+  M  +PYR+++GALM+ A  TRPDIS+A   LA+F+ NPGP+HW+ A+
Sbjct:  670 LSQRQYIIDILERFEMSNCTTVTTPLPDGHRLSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPSHWKAAK 762
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig173738.4512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E2LZP6_MONPE3.890e-1947.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4S4K4A0_9AGAM7.630e-1943.01Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001E1BDE4E2.760e-1852.70secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
UPI001E1BA9BB3.320e-1844.68uncharacterized protein LOC116922675 n=1 Tax=Daphn... [more]
A0A4S4LBP1_9AGAM4.180e-1843.01Reverse transcriptase Ty1/copia-type domain-contai... [more]
W4VRP9_9DIPT4.910e-1841.67Putative retrovirus-related pol polyprotein from t... [more]
A0A4S4L7S0_9AGAM8.100e-1843.01Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q849C0_ASTYP8.250e-1837.23Reverse transcriptase (Fragment) n=1 Tax=Aster yel... [more]
A0A4S4KQD1_9AGAM8.500e-1843.01DOMON domain-containing protein n=1 Tax=Phellinidi... [more]
A0A4V3X9G3_9AGAM8.960e-1843.01Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig173738contigH-elongata_contig173738:1003..1290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score77.8
Seed ortholog evalue2.8e-12
Seed eggNOG ortholog65672.G4TWW2
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs227R3@155619,38DPC@33154,3H58M@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size288
Cds size261
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930009.6077058-UTR-H-elongata_contig173738:1002..10291622930009.6077058-UTR-H-elongata_contig173738:1002..1029Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig173738 1003..1029 +
1691679244.5119905-UTR-H-elongata_contig173738:1002..10291691679244.5119905-UTR-H-elongata_contig173738:1002..1029Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig173738 1003..1029 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930009.6212983-CDS-H-elongata_contig173738:1029..12901622930009.6212983-CDS-H-elongata_contig173738:1029..1290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173738 1030..1290 +
1691679244.522402-CDS-H-elongata_contig173738:1029..12901691679244.522402-CDS-H-elongata_contig173738:1029..1290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173738 1030..1290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig173738.4512.1prot_H-elongata_contig173738.4512.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig173738 1030..1290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig173738.4512.1

>prot_H-elongata_contig173738.4512.1 ID=prot_H-elongata_contig173738.4512.1|Name=mRNA_H-elongata_contig173738.4512.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MAKRFGVTKTSIIPSVAGGKALSKSDSPQTEEEVEEMCQIPYREIIGALM
WAATMTRPDISFAAHQLAKFNDNPGPTHWREAQKAL*
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mRNA from alignment at H-elongata_contig173738:1003..1290+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig173738.4512.1 ID=mRNA_H-elongata_contig173738.4512.1|Name=mRNA_H-elongata_contig173738.4512.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=288bp|location=Sequence derived from alignment at H-elongata_contig173738:1003..1290+ (Himanthalia elongata Himel1 dioecious)
GTGCAGCAACATCAGTACATACATGCTATGGCGAAACGTTTTGGCGTGAC
GAAGACCAGCATCATCCCGTCCGTGGCAGGAGGAAAAGCCCTTTCGAAAT
CAGACAGCCCGCAAACGGAAGAAGAGGTTGAAGAAATGTGCCAGATTCCC
TACCGAGAAATCATTGGAGCCCTAATGTGGGCAGCGACGATGACCAGGCC
CGACATTTCATTCGCTGCGCACCAACTGGCGAAATTCAACGACAACCCGG
GACCGACACACTGGAGGGAAGCCCAGAAAGCGCTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig173738:1003..1290+

>mRNA_H-elongata_contig173738.4512.1 ID=mRNA_H-elongata_contig173738.4512.1|Name=mRNA_H-elongata_contig173738.4512.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig173738:1003..1290+ (Himanthalia elongata Himel1 dioecious)
ATGGCGAAACGTTTTGGCGTGACGAAGACCAGCATCATCCCGTCCGTGGC
AGGAGGAAAAGCCCTTTCGAAATCAGACAGCCCGCAAACGGAAGAAGAGG
TTGAAGAAATGTGCCAGATTCCCTACCGAGAAATCATTGGAGCCCTAATG
TGGGCAGCGACGATGACCAGGCCCGACATTTCATTCGCTGCGCACCAACT
GGCGAAATTCAACGACAACCCGGGACCGACACACTGGAGGGAAGCCCAGA
AAGCGCTGTAAATGGCGAAACGTTTTGGCGTGACGAAGACCAGCATCATC
CCGTCCGTGGCAGGAGGAAAAGCCCTTTCGAAATCAGACAGCCCGCAAAC
GGAAGAAGAGGTTGAAGAAATGTGCCAGATTCCCTACCGAGAAATCATTG
GAGCCCTAATGTGGGCAGCGACGATGACCAGGCCCGACATTTCATTCGCT
GCGCACCAACTGGCGAAATTCAACGACAACCCGGGACCGACACACTGGAG
GGAAGCCCAGAAAGCGCTGTAA
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