mRNA_H-elongata_contig17367.4511.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17367.4511.1
Unique NamemRNA_H-elongata_contig17367.4511.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17367.4511.1 vs. uniprot
Match: A0A6H5KHN1_9PHAE (Str_synth domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN1_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 9.500e-15
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    7 LTLEDERKCGRPLGVRWREGKLYILDAYHGLFELDIKTG--RAKQLV 141
            LT E+E++CGRPLGV+WR GKLYILDAYHGLFEL+   G  RAK L+
Sbjct:  138 LTAEEEKRCGRPLGVKWRNGKLYILDAYHGLFELEFAKGGTRAKHLI 184
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BLAST of mRNA_H-elongata_contig17367.4511.1 vs. uniprot
Match: A0A7M7GHX4_STRPU (Str_synth domain-containing protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7GHX4_STRPU)

HSP 1 Score: 60.8 bits (146), Expect = 1.390e-9
Identity = 24/36 (66.67%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   10 TLEDERKCGRPLGVRWREGKLYILDAYHGLFELDIK 117
            T EDE KCGRPLG+R+ + KLY++DAY+GLFE+D+K
Sbjct:  147 TREDEMKCGRPLGIRFIDDKLYMMDAYYGLFEVDVK 182
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BLAST of mRNA_H-elongata_contig17367.4511.1 vs. uniprot
Match: A0A0N4UAB6_DRAME (Str_synth domain-containing protein n=1 Tax=Dracunculus medinensis TaxID=318479 RepID=A0A0N4UAB6_DRAME)

HSP 1 Score: 58.5 bits (140), Expect = 8.770e-9
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   10 TLEDERKCGRPLGVRWRE---GKLYILDAYHGLFELDIKTGRAKQLV 141
            T +   KCGRPLGVR+R+    KL+I DAYHGL+ELDI TG++K ++
Sbjct:   83 TFKSFPKCGRPLGVRFRKLYRNKLFIADAYHGLYELDIITGKSKLIL 129
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BLAST of mRNA_H-elongata_contig17367.4511.1 vs. uniprot
Match: A0A7S2V5T4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5T4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 8.850e-9
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 MELTLEDERKCGRPLGVRWREGKLYILDAYHGLFELDIKTGRAKQL 138
            + L+ + E KCGRPLG+R++  KLY +DAYHGLF LD+ +  A  L
Sbjct:   58 LHLSSDWEHKCGRPLGLRYKSNKLYFVDAYHGLFMLDLNSSTATWL 103
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BLAST of mRNA_H-elongata_contig17367.4511.1 vs. uniprot
Match: A0A7S2V6X8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6X8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 9.110e-9
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 MELTLEDERKCGRPLGVRWREGKLYILDAYHGLFELDIKTGRAKQL 138
            + L+ + E KCGRPLG+R++  KLY +DAYHGLF LD+ +  A  L
Sbjct:  525 LHLSSDWEHKCGRPLGLRYKSNKLYFVDAYHGLFMLDLNSSTATWL 570
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BLAST of mRNA_H-elongata_contig17367.4511.1 vs. uniprot
Match: A0A0J7MS64_LASNI (Adipocyte plasma membrane-associated protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7MS64_LASNI)

HSP 1 Score: 54.3 bits (129), Expect = 2.800e-8
Identity = 23/50 (46.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 MELT--LEDERKCGRPLGVRW-REGKLYILDAYHGLFELDIKTGRAKQLV 141
            M LT  +  E KCGRPLG+++ ++G LY++DAY+G+F++++ TG  K +V
Sbjct:    1 MNLTDGMWQEHKCGRPLGMKFDKKGNLYVIDAYYGIFKVNVATGEYKNIV 50
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BLAST of mRNA_H-elongata_contig17367.4511.1 vs. uniprot
Match: UPI001BB29120 (adipocyte plasma membrane-associated protein-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB29120)

HSP 1 Score: 56.2 bits (134), Expect = 5.940e-8
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   10 TLEDERKCGRPLGVRWREGKLYILDAYHGLFELDIK 117
            T EDE KCGRPLG+++   KLY++DAY+GLFE+D K
Sbjct:  148 TREDEMKCGRPLGIKFIGDKLYMIDAYYGLFEIDHK 183
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BLAST of mRNA_H-elongata_contig17367.4511.1 vs. uniprot
Match: A0A834MH75_RHYFE (Str_synth domain-containing protein n=1 Tax=Rhynchophorus ferrugineus TaxID=354439 RepID=A0A834MH75_RHYFE)

HSP 1 Score: 56.2 bits (134), Expect = 5.960e-8
Identity = 23/45 (51.11%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   10 TLEDERKCGRPLGVRW-REGKLYILDAYHGLFELDIKTGRAKQLV 141
            ++++E  CGRPLG+ + ++GKL++ DAY+GLFE+++KTG  K LV
Sbjct:  111 SIDEEAICGRPLGLEFDKDGKLFVADAYYGLFEVNVKTGDKKLLV 155
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BLAST of mRNA_H-elongata_contig17367.4511.1 vs. uniprot
Match: V5H1C0_IXORI (Putative conserved secreted protein n=1 Tax=Ixodes ricinus TaxID=34613 RepID=V5H1C0_IXORI)

HSP 1 Score: 55.1 bits (131), Expect = 1.360e-7
Identity = 23/44 (52.27%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   13 LEDERKCGRPLGVRW-REGKLYILDAYHGLFELDIKTGRAKQLV 141
            L +E  CGRPLG+R+ +EGKLY++DAY+GL+ +++ TG A+ L+
Sbjct:  108 LWEEEVCGRPLGMRFDKEGKLYVVDAYYGLYMVNVNTGAAQHLL 151
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BLAST of mRNA_H-elongata_contig17367.4511.1 vs. uniprot
Match: A0A090XDL6_IXORI (Putative conserved secreted protein n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A090XDL6_IXORI)

HSP 1 Score: 55.1 bits (131), Expect = 1.520e-7
Identity = 23/44 (52.27%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   13 LEDERKCGRPLGVRW-REGKLYILDAYHGLFELDIKTGRAKQLV 141
            L +E  CGRPLG+R+ +EGKLY++DAY+GL+ +++ TG A+ L+
Sbjct:  108 LWEEEVCGRPLGMRFDKEGKLYVVDAYYGLYMVNVNTGAAQHLL 151
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17367.4511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHN1_9PHAE9.500e-1570.21Str_synth domain-containing protein n=1 Tax=Ectoca... [more]
A0A7M7GHX4_STRPU1.390e-966.67Str_synth domain-containing protein n=1 Tax=Strong... [more]
A0A0N4UAB6_DRAME8.770e-957.45Str_synth domain-containing protein n=1 Tax=Dracun... [more]
A0A7S2V5T4_9STRA8.850e-952.17Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2V6X8_9STRA9.110e-952.17Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0J7MS64_LASNI2.800e-846.00Adipocyte plasma membrane-associated protein n=1 T... [more]
UPI001BB291205.940e-863.89adipocyte plasma membrane-associated protein-like ... [more]
A0A834MH75_RHYFE5.960e-851.11Str_synth domain-containing protein n=1 Tax=Rhynch... [more]
V5H1C0_IXORI1.360e-752.27Putative conserved secreted protein n=1 Tax=Ixodes... [more]
A0A090XDL6_IXORI1.520e-752.27Putative conserved secreted protein n=1 Tax=Ixodes... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17367contigH-elongata_contig17367:412..552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score61.6
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog7668.SPU_002510-tr
Preferred nameAPMAP
KEGG koko:K21407
GOsGO:0003674,GO:0003824,GO:0004064,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0009986,GO:0012505,GO:0016020,GO:0016787,GO:0016788,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0052689
EggNOG free text desc.amine-lyase activity
EggNOG OGs38F9T@33154,3BFX5@33208,3CWYB@33213,COG1185@1,KOG1520@2759
COG Functional cat.J
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930009.5734873-CDS-H-elongata_contig17367:411..5521622930009.5734873-CDS-H-elongata_contig17367:411..552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17367 412..552 +
1691679244.49398-CDS-H-elongata_contig17367:411..5521691679244.49398-CDS-H-elongata_contig17367:411..552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17367 412..552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17367.4511.1prot_H-elongata_contig17367.4511.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17367 412..552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17367.4511.1

>prot_H-elongata_contig17367.4511.1 ID=prot_H-elongata_contig17367.4511.1|Name=mRNA_H-elongata_contig17367.4511.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
MELTLEDERKCGRPLGVRWREGKLYILDAYHGLFELDIKTGRAKQLV
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mRNA from alignment at H-elongata_contig17367:412..552+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17367.4511.1 ID=mRNA_H-elongata_contig17367.4511.1|Name=mRNA_H-elongata_contig17367.4511.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig17367:412..552+ (Himanthalia elongata Himel1 dioecious)
ATGGAGCTCACGCTCGAGGACGAAAGGAAATGTGGTCGACCACTTGGCGT
CAGATGGCGGGAAGGCAAGTTGTACATCCTCGACGCCTATCACGGCCTGT
TCGAGCTGGACATCAAGACCGGGCGCGCCAAACAACTGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig17367:412..552+

>mRNA_H-elongata_contig17367.4511.1 ID=mRNA_H-elongata_contig17367.4511.1|Name=mRNA_H-elongata_contig17367.4511.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig17367:412..552+ (Himanthalia elongata Himel1 dioecious)
ATGGAGCTCACGCTCGAGGACGAAAGGAAATGTGGTCGACCACTTGGCGT
CAGATGGCGGGAAGGCAAGTTGTACATCCTCGACGCCTATCACGGCCTGT
TCGAGCTGGACATCAAGACCGGGCGCGCCAAACAACTGGTGATGGAGCTC
ACGCTCGAGGACGAAAGGAAATGTGGTCGACCACTTGGCGTCAGATGGCG
GGAAGGCAAGTTGTACATCCTCGACGCCTATCACGGCCTGTTCGAGCTGG
ACATCAAGACCGGGCGCGCCAAACAACTGGTG
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