mRNA_H-elongata_contig173668.4510.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig173668.4510.1
Unique NamemRNA_H-elongata_contig173668.4510.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig173668.4510.1 vs. uniprot
Match: D7FPK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK9_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.310e-18
Identity = 44/64 (68.75%), Postives = 50/64 (78.12%), Query Frame = 1
Query:    1 HQIHIDGLFNGDPHPGNILLQTKSSEGGPSGGQDAGEGKLALPVLLDWGLAKTLSERLRIAFSR 192
            +QIHIDGLFNGDPHPGNILLQ  +S    SGG+     + A+PVLLDWGLAKTL + LRIAFSR
Sbjct:  327 YQIHIDGLFNGDPHPGNILLQPAASSS-KSGGKRGRGSRAAVPVLLDWGLAKTLPDHLRIAFSR 389          
BLAST of mRNA_H-elongata_contig173668.4510.1 vs. uniprot
Match: A0A6H5KBB7_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBB7_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.790e-18
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1
Query:    1 HQIHIDGLFNGDPHPGNILLQTKSSEGGPSGGQDAGEGKLALPVLLDWGLAKTLSERLRIAFSR 192
            +QIHIDGLFNGDPHPGNILLQ  ++     G +D G  + A+PVLLDWGLAKTL + LRIAFSR
Sbjct:  767 YQIHIDGLFNGDPHPGNILLQPAATSSRSDGKRDHGS-RAAVPVLLDWGLAKTLPDHLRIAFSR 829          
BLAST of mRNA_H-elongata_contig173668.4510.1 vs. uniprot
Match: A0A7S2V6Z4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6Z4_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.800e-14
Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    1 HQIHIDGLFNGDPHPGNILLQTKSSEGGPSGGQDAGEGKLALPVLLDWGLAKTLSERLRIAFSR 192
            +QI++DGLFNGDPHPGNIL+Q  S EGG  GG   G      PVLLDWGLAKTL + LR+AF+R
Sbjct:  117 YQIYMDGLFNGDPHPGNILVQ--SEEGG--GGWVTG----TKPVLLDWGLAKTLPDHLRLAFAR 172          
BLAST of mRNA_H-elongata_contig173668.4510.1 vs. uniprot
Match: A0A7S2R8C9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R8C9_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.090e-13
Identity = 33/63 (52.38%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    4 QIHIDGLFNGDPHPGNILLQTKSSEGGPSGGQDAGEGKLALPVLLDWGLAKTLSERLRIAFSR 192
            Q+H+ G+FN DPHPGNIL+ T  S+G      D G+G +++PVLLD+GL K LS R+++AF+R
Sbjct:    6 QMHVGGIFNADPHPGNILVSTAYSQG------DGGDGDVSVPVLLDFGLTKRLSPRMKLAFAR 62          
BLAST of mRNA_H-elongata_contig173668.4510.1 vs. uniprot
Match: A0A7S4CTW3_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CTW3_9EUGL)

HSP 1 Score: 72.4 bits (176), Expect = 2.500e-13
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 HQIHIDGLFNGDPHPGNILLQTKSSEGGPSGGQDAGEGKLALPVLLDWGLAKTLSERLRIAFSR 192
            +Q+HIDGLFN DPHPGNIL+Q  S +G P          +A PVLLDWGLAK + +  R+AF++
Sbjct:  463 YQMHIDGLFNADPHPGNILVQINSKDGAPP---------VATPVLLDWGLAKIMDDDKRLAFAQ 517          
BLAST of mRNA_H-elongata_contig173668.4510.1 vs. uniprot
Match: A0A835ZC02_9STRA (Beta-lactamase/transpeptidase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC02_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.410e-13
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    1 HQIHIDGLFNGDPHPGNILLQTKSSEGG-PSGGQDAGEGKLALPVLLDWGLAKTLSERLRIAFSR 192
            +Q+HI G FNGDPHPGNIL++T + E G PS          A PVLLDWGLAK L E LR+AFS+
Sbjct:  282 YQVHILGRFNGDPHPGNILIETFTDEAGCPS----------ARPVLLDWGLAKQLPEHLRLAFSK 336          
BLAST of mRNA_H-elongata_contig173668.4510.1 vs. uniprot
Match: A0A7S3XWD7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWD7_HETAK)

HSP 1 Score: 71.2 bits (173), Expect = 6.350e-13
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 HQIHIDGLFNGDPHPGNILLQTKSSEGGPSGGQDAGEGKLALPVLLDWGLAKTLSERLRIAFSR 192
            +Q+H+DGLFNGDPHPGNIL+Q +  +GG +            PVLLDWGLAK   E+ R+AF++
Sbjct:  309 YQMHVDGLFNGDPHPGNILVQAREVDGGRALADPR-------PVLLDWGLAKAFGEQKRLAFAK 365          
BLAST of mRNA_H-elongata_contig173668.4510.1 vs. uniprot
Match: A0A7S3XWC8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWC8_HETAK)

HSP 1 Score: 71.2 bits (173), Expect = 6.360e-13
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 HQIHIDGLFNGDPHPGNILLQTKSSEGGPSGGQDAGEGKLALPVLLDWGLAKTLSERLRIAFSR 192
            +Q+H+DGLFNGDPHPGNIL+Q +  +GG +            PVLLDWGLAK   E+ R+AF++
Sbjct:  309 YQMHVDGLFNGDPHPGNILVQAREVDGGRALADPR-------PVLLDWGLAKAFGEQKRLAFAK 365          
BLAST of mRNA_H-elongata_contig173668.4510.1 vs. uniprot
Match: A0A2C6KHD4_9APIC (Abc1 family protein (Fragment) n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6KHD4_9APIC)

HSP 1 Score: 67.8 bits (164), Expect = 5.470e-12
Identity = 33/64 (51.56%), Postives = 40/64 (62.50%), Query Frame = 1
Query:    1 HQIHIDGLFNGDPHPGNILLQTKSSEGGPSGGQDAGEGKLALPVLLDWGLAKTLSERLRIAFSR 192
            +QIHIDGLFNGDPHPGNIL+Q     G             A PV+LDWGL KT   + ++AFS+
Sbjct:  218 YQIHIDGLFNGDPHPGNILVQIDEETGD------------ATPVILDWGLVKTFDSKGQLAFSK 269          
BLAST of mRNA_H-elongata_contig173668.4510.1 vs. uniprot
Match: A0A023BDS2_GRENI (Putative of plant or bacterial origin n=1 Tax=Gregarina niphandrodes TaxID=110365 RepID=A0A023BDS2_GRENI)

HSP 1 Score: 68.6 bits (166), Expect = 5.700e-12
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 1
Query:    1 HQIHIDGLFNGDPHPGNILLQTKSSEGGPSGGQDAGEGKLALPVLLDWGLAKTLSERLRIAFSR 192
            +QIHIDGLFNGDPHPGNI+++     G P             PVLLDWGL K  +E+ R+AF+R
Sbjct:  272 YQIHIDGLFNGDPHPGNIMVEIDKITGKPR------------PVLLDWGLVKEFNEKERLAFAR 323          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig173668.4510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPK9_ECTSI1.310e-1868.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBB7_9PHAE1.790e-1867.19FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S2V6Z4_9STRA3.800e-1464.06Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2R8C9_9STRA1.090e-1352.38Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S4CTW3_9EUGL2.500e-1353.13Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A835ZC02_9STRA3.410e-1358.46Beta-lactamase/transpeptidase-like protein n=1 Tax... [more]
A0A7S3XWD7_HETAK6.350e-1351.56Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XWC8_HETAK6.360e-1351.56Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2C6KHD4_9APIC5.470e-1251.56Abc1 family protein (Fragment) n=1 Tax=Cystoisospo... [more]
A0A023BDS2_GRENI5.700e-1251.56Putative of plant or bacterial origin n=1 Tax=Greg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig173668contigH-elongata_contig173668:1116..1307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue1.5e-15
Seed eggNOG ortholog2880.D7FPK9
KEGG koko:K08869,ko:K10779
EggNOG free text desc.regulation of tocopherol cyclase activity
EggNOG OGsCOG0661@1,KOG1235@2759
EC3.6.4.12
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko03000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930009.5328443-CDS-H-elongata_contig173668:1115..13071622930009.5328443-CDS-H-elongata_contig173668:1115..1307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173668 1116..1307 -
1691679244.4800012-CDS-H-elongata_contig173668:1115..13071691679244.4800012-CDS-H-elongata_contig173668:1115..1307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173668 1116..1307 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig173668.4510.1prot_H-elongata_contig173668.4510.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig173668 1116..1307 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig173668.4510.1

>prot_H-elongata_contig173668.4510.1 ID=prot_H-elongata_contig173668.4510.1|Name=mRNA_H-elongata_contig173668.4510.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
HQIHIDGLFNGDPHPGNILLQTKSSEGGPSGGQDAGEGKLALPVLLDWGL
AKTLSERLRIAFSR
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mRNA from alignment at H-elongata_contig173668:1116..1307-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig173668.4510.1 ID=mRNA_H-elongata_contig173668.4510.1|Name=mRNA_H-elongata_contig173668.4510.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig173668:1116..1307- (Himanthalia elongata Himel1 dioecious)
CATCAGATCCACATAGACGGTCTCTTCAACGGCGATCCTCACCCCGGAAA CATCCTGCTACAGACCAAGTCTTCCGAGGGAGGACCAAGCGGAGGACAGG ACGCCGGGGAAGGGAAGTTAGCGCTTCCTGTGCTGCTGGACTGGGGCCTC GCTAAGACGCTATCAGAACGCCTGAGGATCGCCTTCAGTCGG
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Coding sequence (CDS) from alignment at H-elongata_contig173668:1116..1307-

>mRNA_H-elongata_contig173668.4510.1 ID=mRNA_H-elongata_contig173668.4510.1|Name=mRNA_H-elongata_contig173668.4510.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig173668:1116..1307- (Himanthalia elongata Himel1 dioecious)
CATCAGATCCACATAGACGGTCTCTTCAACGGCGATCCTCACCCCGGAAA
CATCCTGCTACAGACCAAGTCTTCCGAGGGAGGACCAAGCGGAGGACAGG
ACGCCGGGGAAGGGAAGTTAGCGCTTCCTGTGCTGCTGGACTGGGGCCTC
GCTAAGACGCTATCAGAACGCCTGAGGATCGCCTTCAGTCGGCATCAGAT
CCACATAGACGGTCTCTTCAACGGCGATCCTCACCCCGGAAACATCCTGC
TACAGACCAAGTCTTCCGAGGGAGGACCAAGCGGAGGACAGGACGCCGGG
GAAGGGAAGTTAGCGCTTCCTGTGCTGCTGGACTGGGGCCTCGCTAAGAC
GCTATCAGAACGCCTGAGGATCGCCTTCAGTCGG
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