mRNA_H-elongata_contig17363.4507.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17363.4507.1
Unique NamemRNA_H-elongata_contig17363.4507.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17363.4507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17363contigH-elongata_contig17363:1382..2440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1061
Cds size1059
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930009.4419804-CDS-H-elongata_contig17363:1381..24401622930009.4419804-CDS-H-elongata_contig17363:1381..2440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17363 1382..2440 +
1691679244.458414-CDS-H-elongata_contig17363:1381..24401691679244.458414-CDS-H-elongata_contig17363:1381..2440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17363 1382..2440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17363.4507.1prot_H-elongata_contig17363.4507.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17363 1382..2440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17363.4507.1

>prot_H-elongata_contig17363.4507.1 ID=prot_H-elongata_contig17363.4507.1|Name=mRNA_H-elongata_contig17363.4507.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=353bp
MRGSAGQGSGWWFKQENTAQQLPEWSANTGATMADSSNDVIVHEDAEVLG
SAFGIAADNAKEGEQLEPLAADIVNSSRHRGREEPMLAFQEEFEEAKEFN
QQRSEKAVGQHNGRIFDGVHAEVMSGNRGYRNDPKGGEGSGDRIDRVDLP
MASSSPKSNFSLREHGARGHANVFVVDAASQQRMHGFNHQPAGDSRKPLP
SDLRKQEGGRPRSYNTPATAVDVSLVGGSRSTEGLTCARSVSVSVVTTVV
DTVVEDTGSYHAPTGESFEWPTVDDFQRSLEDPWPNVAPTSQDTGKGNGQ
ALASPVEFTKDVNISRARAGEGQIAVATAVSEAPPDKSTQDREREEQLWK
RLQ
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mRNA from alignment at H-elongata_contig17363:1382..2440+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17363.4507.1 ID=mRNA_H-elongata_contig17363.4507.1|Name=mRNA_H-elongata_contig17363.4507.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1059bp|location=Sequence derived from alignment at H-elongata_contig17363:1382..2440+ (Himanthalia elongata Himel1 dioecious)
ATGAGGGGATCCGCTGGTCAGGGCTCCGGGTGGTGGTTCAAGCAAGAAAA
CACGGCGCAGCAGCTTCCCGAGTGGTCAGCTAACACTGGCGCTACCATGG
CCGATTCTAGTAATGACGTCATTGTCCACGAAGACGCGGAGGTGTTGGGG
TCAGCGTTTGGGATCGCCGCAGACAATGCGAAAGAGGGCGAACAGCTCGA
GCCTCTAGCTGCCGATATCGTAAACAGCTCGCGGCATCGCGGGAGAGAAG
AACCCATGTTGGCATTTCAAGAAGAATTCGAAGAGGCTAAGGAGTTCAAT
CAGCAACGGTCGGAAAAGGCAGTCGGTCAACATAACGGCCGAATATTTGA
TGGAGTTCATGCAGAGGTCATGTCAGGTAACAGAGGTTACAGAAATGACC
CCAAAGGAGGCGAGGGCAGTGGCGACAGAATCGACCGTGTCGATCTACCG
ATGGCTTCCTCCTCTCCGAAGAGCAACTTCAGTCTCAGAGAGCATGGTGC
TCGTGGGCACGCTAATGTTTTTGTGGTTGACGCAGCCTCGCAGCAGAGAA
TGCACGGTTTTAACCACCAGCCCGCGGGGGATTCACGGAAACCGCTACCG
AGTGATCTTCGGAAGCAGGAGGGTGGACGGCCCAGGAGCTACAACACCCC
CGCAACGGCTGTGGACGTTTCTTTAGTGGGAGGCTCGAGATCGACCGAAG
GATTAACCTGTGCGCGTTCTGTGTCGGTGTCCGTCGTCACCACCGTTGTC
GACACCGTTGTTGAAGATACCGGGAGCTACCATGCCCCAACTGGTGAAAG
TTTTGAATGGCCTACCGTAGATGATTTTCAGCGCAGTTTGGAGGACCCTT
GGCCTAACGTAGCACCGACTTCGCAGGATACCGGCAAAGGGAATGGTCAA
GCGTTAGCTTCCCCCGTGGAATTCACAAAGGATGTGAACATATCGCGGGC
TCGTGCAGGGGAAGGCCAGATAGCAGTAGCGACGGCTGTGTCGGAAGCGC
CCCCCGATAAATCTACCCAGGACCGTGAACGGGAGGAGCAGCTGTGGAAG
AGGCTTCAA
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Coding sequence (CDS) from alignment at H-elongata_contig17363:1382..2440+

>mRNA_H-elongata_contig17363.4507.1 ID=mRNA_H-elongata_contig17363.4507.1|Name=mRNA_H-elongata_contig17363.4507.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2118bp|location=Sequence derived from alignment at H-elongata_contig17363:1382..2440+ (Himanthalia elongata Himel1 dioecious)
ATGAGGGGATCCGCTGGTCAGGGCTCCGGGTGGTGGTTCAAGCAAGAAAA
CACGGCGCAGCAGCTTCCCGAGTGGTCAGCTAACACTGGCGCTACCATGG
CCGATTCTAGTAATGACGTCATTGTCCACGAAGACGCGGAGGTGTTGGGG
TCAGCGTTTGGGATCGCCGCAGACAATGCGAAAGAGGGCGAACAGCTCGA
GCCTCTAGCTGCCGATATCGTAAACAGCTCGCGGCATCGCGGGAGAGAAG
AACCCATGTTGGCATTTCAAGAAGAATTCGAAGAGGCTAAGGAGTTCAAT
CAGCAACGGTCGGAAAAGGCAGTCGGTCAACATAACGGCCGAATATTTGA
TGGAGTTCATGCAGAGGTCATGTCAGGTAACAGAGGTTACAGAAATGACC
CCAAAGGAGGCGAGGGCAGTGGCGACAGAATCGACCGTGTCGATCTACCG
ATGGCTTCCTCCTCTCCGAAGAGCAACTTCAGTCTCAGAGAGCATGGTGC
TCGTGGGCACGCTAATGTTTTTGTGGTTGACGCAGCCTCGCAGCAGAGAA
TGCACGGTTTTAACCACCAGCCCGCGGGGGATTCACGGAAACCGCTACCG
AGTGATCTTCGGAAGCAGGAGGGTGGACGGCCCAGGAGCTACAACACCCC
CGCAACGGCTGTGGACGTTTCTTTAGTGGGAGGCTCGAGATCGACCGAAG
GATTAACCTGTGCGCGTTCTGTGTCGGTGTCCGTCGTCACCACCGTTGTC
GACACCGTTGTTGAAGATACCGGGAGCTACCATGCCCCAACTGGTGAAAG
TTTTGAATGGCCTACCGTAGATGATTTTCAGCGCAGTTTGGAGGACCCTT
GGCCTAACGTAGCACCGACTTCGCAGGATACCGGCAAAGGGAATGGTCAA
GCGTTAGCTTCCCCCGTGGAATTCACAAAGGATGTGAACATATCGCGGGC
TCGTGCAGGGGAAGGCCAGATAGCAGTAGCGACGGCTGTGTCGGAAGCGC
CCCCCGATAAATCTACCCAGGACCGTGAACGGGAGGAGCAGCTGTGGAAG
AGGCTTCAAATGAGGGGATCCGCTGGTCAGGGCTCCGGGTGGTGGTTCAA
GCAAGAAAACACGGCGCAGCAGCTTCCCGAGTGGTCAGCTAACACTGGCG
CTACCATGGCCGATTCTAGTAATGACGTCATTGTCCACGAAGACGCGGAG
GTGTTGGGGTCAGCGTTTGGGATCGCCGCAGACAATGCGAAAGAGGGCGA
ACAGCTCGAGCCTCTAGCTGCCGATATCGTAAACAGCTCGCGGCATCGCG
GGAGAGAAGAACCCATGTTGGCATTTCAAGAAGAATTCGAAGAGGCTAAG
GAGTTCAATCAGCAACGGTCGGAAAAGGCAGTCGGTCAACATAACGGCCG
AATATTTGATGGAGTTCATGCAGAGGTCATGTCAGGTAACAGAGGTTACA
GAAATGACCCCAAAGGAGGCGAGGGCAGTGGCGACAGAATCGACCGTGTC
GATCTACCGATGGCTTCCTCCTCTCCGAAGAGCAACTTCAGTCTCAGAGA
GCATGGTGCTCGTGGGCACGCTAATGTTTTTGTGGTTGACGCAGCCTCGC
AGCAGAGAATGCACGGTTTTAACCACCAGCCCGCGGGGGATTCACGGAAA
CCGCTACCGAGTGATCTTCGGAAGCAGGAGGGTGGACGGCCCAGGAGCTA
CAACACCCCCGCAACGGCTGTGGACGTTTCTTTAGTGGGAGGCTCGAGAT
CGACCGAAGGATTAACCTGTGCGCGTTCTGTGTCGGTGTCCGTCGTCACC
ACCGTTGTCGACACCGTTGTTGAAGATACCGGGAGCTACCATGCCCCAAC
TGGTGAAAGTTTTGAATGGCCTACCGTAGATGATTTTCAGCGCAGTTTGG
AGGACCCTTGGCCTAACGTAGCACCGACTTCGCAGGATACCGGCAAAGGG
AATGGTCAAGCGTTAGCTTCCCCCGTGGAATTCACAAAGGATGTGAACAT
ATCGCGGGCTCGTGCAGGGGAAGGCCAGATAGCAGTAGCGACGGCTGTGT
CGGAAGCGCCCCCCGATAAATCTACCCAGGACCGTGAACGGGAGGAGCAG
CTGTGGAAGAGGCTTCAA
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