mRNA_H-elongata_contig17334.4494.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17334.4494.1
Unique NamemRNA_H-elongata_contig17334.4494.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17334.4494.1 vs. uniprot
Match: D7FWS7_ECTSI (Deoxyhypusine hydroxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWS7_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.360e-16
Identity = 40/68 (58.82%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:    1 MGG-TGEERGIPPLEKLRECLLDRSQPIAKRTHSAFFLRTMGTVEAVNVVGQGNTQRRDPIETNHRVA 201
            MGG   E++ IPPL++LRECLLDR QPIAKRTHSAFFLRT+G+ EAV+ VG+      D     H +A
Sbjct:    1 MGGEVQEKKEIPPLQQLRECLLDRGQPIAKRTHSAFFLRTLGSAEAVSAVGEALLVEEDSALLRHELA 68
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BLAST of mRNA_H-elongata_contig17334.4494.1 vs. uniprot
Match: A0A7S2V0Z7_9STRA (Deoxyhypusine hydroxylase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0Z7_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.170e-10
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:   19 ERGIPPLEKLRECLLDRSQPIAKRTHSAFFLRTMGTVEAVNVVGQGNTQRRDPIETNHRVA 201
            +  IPPLE L+EC+L  S+P+AKRTH+AF+LRT+ + EAV  + Q  + + D     H +A
Sbjct:   11 DNDIPPLENLKECVLQTSEPVAKRTHAAFYLRTINSKEAVEAICQAVSNKEDSALLRHELA 71
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BLAST of mRNA_H-elongata_contig17334.4494.1 vs. uniprot
Match: W7TL38_9STRA (Deoxyhypusine hydroxylase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TL38_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.730e-8
Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:   10 TGEERGIPPLEKLRECLLDRSQPIAKRTHSAFFLRTMGTVEAVNVVGQGNTQRRDPIETNHRV 198
            +G  R  P +  LR+CLLD SQPI KRTH+AF LRT G  EAV+ +G+    ++D     H +
Sbjct:   25 SGLVRMAPDVAVLRKCLLDVSQPIQKRTHAAFVLRTDGESEAVSAIGEALRNKQDSALLRHEL 87
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BLAST of mRNA_H-elongata_contig17334.4494.1 vs. uniprot
Match: A0A7S4DDJ9_HETAK (Deoxyhypusine monooxygenase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDJ9_HETAK)

HSP 1 Score: 57.8 bits (138), Expect = 3.600e-8
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   31 PPLEKLRECLLDRSQPIAKRTHSAFFLRTMGTVEAVNVV 147
            P L+ L  CLL+ S+PIAKRTH+AFFLRT+GT EAV V+
Sbjct:    5 PALQDLEACLLNSSEPIAKRTHAAFFLRTLGTGEAVEVI 43
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BLAST of mRNA_H-elongata_contig17334.4494.1 vs. uniprot
Match: A0A835ZDK9_9STRA (Deoxyhypusine hydroxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDK9_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 3.020e-6
Identity = 23/57 (40.35%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:   28 IPPLEKLRECLLDRSQPIAKRTHSAFFLRTMGTVEAVNVVGQGNTQRRDPIETNHRV 198
             PP+  L  CL D +QP+ KRTH+AF+LRT+G  +AV+ +      R D     H +
Sbjct:   16 FPPVPALGACLADTAQPLGKRTHAAFYLRTIGGADAVDAIAVALRNRDDSALLRHEL 72
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BLAST of mRNA_H-elongata_contig17334.4494.1 vs. uniprot
Match: H3GH76_PHYRM (Deoxyhypusine hydroxylase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GH76_PHYRM)

HSP 1 Score: 48.1 bits (113), Expect = 9.650e-5
Identity = 23/57 (40.35%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:   31 PPLEKLRECLLDRSQPIAKRTHSAFFLRTMGTVEAVNVVGQGNTQRRDPIETNHRVA 201
            P  E+LR+ LLD S+P+ KRT + F+LR+ G +E + V+ Q    R D     H +A
Sbjct:   21 PSFERLRDALLDLSEPVGKRTRAIFYLRSRGGLEDLQVLLQALLNREDSELMRHELA 77
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17334.4494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FWS7_ECTSI1.360e-1658.82Deoxyhypusine hydroxylase n=2 Tax=Ectocarpus TaxID... [more]
A0A7S2V0Z7_9STRA1.170e-1045.90Deoxyhypusine hydroxylase n=1 Tax=Fibrocapsa japon... [more]
W7TL38_9STRA2.730e-846.03Deoxyhypusine hydroxylase n=2 Tax=Monodopsidaceae ... [more]
A0A7S4DDJ9_HETAK3.600e-866.67Deoxyhypusine monooxygenase (Fragment) n=1 Tax=Het... [more]
A0A835ZDK9_9STRA3.020e-640.35Deoxyhypusine hydroxylase n=1 Tax=Tribonema minus ... [more]
H3GH76_PHYRM9.650e-540.35Deoxyhypusine hydroxylase n=1 Tax=Phytophthora ram... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17334contigH-elongata_contig17334:608..808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue3.3e-13
Seed eggNOG ortholog2880.D7FWS7
Preferred nameLIA1
KEGG rclassRC00003,RC00060
KEGG koko:K06072,ko:K08187,ko:K16369
KEGG TC2.A.1.13
KEGG ReactionR02056
KEGG Pathwayko00564,ko01100,ko01110,ko04919,ko04974,map00564,map01100,map01110,map04919,map04974
KEGG ModuleM00091
GOsGO:0000226,GO:0003674,GO:0003824,GO:0004497,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006417,GO:0006464,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0008150,GO:0008152,GO:0008283,GO:0008612,GO:0009058,GO:0009268,GO:0009628,GO:0009889,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0010608,GO:0012505,GO:0016020,GO:0016043,GO:0016491,GO:0016705,GO:0018193,GO:0018205,GO:0019135,GO:0019222,GO:0019538,GO:0030447,GO:0031323,GO:0031325,GO:0031326,GO:0031329,GO:0031331,GO:0031984,GO:0032268,GO:0034248,GO:0036176,GO:0036177,GO:0036178,GO:0036211,GO:0040007,GO:0042175,GO:0042710,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044010,GO:0044011,GO:0044182,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044764,GO:0046872,GO:0046914,GO:0048037,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051604,GO:0051703,GO:0051704,GO:0055114,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090605,GO:0090609,GO:0098827,GO:1901564,GO:2000112,GO:2000765
EggNOG free text desc.deoxyhypusine monooxygenase activity
EggNOG OGsCOG1413@1,KOG0567@2759
EC1.14.99.29,2.1.1.17
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930008.0159023-CDS-H-elongata_contig17334:607..8081622930008.0159023-CDS-H-elongata_contig17334:607..808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17334 608..808 -
1691679243.701283-CDS-H-elongata_contig17334:607..8081691679243.701283-CDS-H-elongata_contig17334:607..808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17334 608..808 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17334.4494.1prot_H-elongata_contig17334.4494.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17334 608..808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17334.4494.1

>prot_H-elongata_contig17334.4494.1 ID=prot_H-elongata_contig17334.4494.1|Name=mRNA_H-elongata_contig17334.4494.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MGGTGEERGIPPLEKLRECLLDRSQPIAKRTHSAFFLRTMGTVEAVNVVG
QGNTQRRDPIETNHRVA
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mRNA from alignment at H-elongata_contig17334:608..808-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17334.4494.1 ID=mRNA_H-elongata_contig17334.4494.1|Name=mRNA_H-elongata_contig17334.4494.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig17334:608..808- (Himanthalia elongata Himel1 dioecious)
ATGGGAGGCACAGGAGAAGAAAGAGGCATACCCCCGCTGGAAAAGCTGCG
AGAATGCCTCCTTGATCGAAGTCAGCCGATCGCGAAGAGGACTCACTCGG
CGTTCTTTCTGCGAACGATGGGCACGGTCGAGGCTGTTAACGTTGTCGGT
CAAGGTAACACACAGCGCAGAGACCCCATCGAGACTAACCATAGAGTTGC
G
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Coding sequence (CDS) from alignment at H-elongata_contig17334:608..808-

>mRNA_H-elongata_contig17334.4494.1 ID=mRNA_H-elongata_contig17334.4494.1|Name=mRNA_H-elongata_contig17334.4494.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig17334:608..808- (Himanthalia elongata Himel1 dioecious)
ATGGGAGGCACAGGAGAAGAAAGAGGCATACCCCCGCTGGAAAAGCTGCG
AGAATGCCTCCTTGATCGAAGTCAGCCGATCGCGAAGAGGACTCACTCGG
CGTTCTTTCTGCGAACGATGGGCACGGTCGAGGCTGTTAACGTTGTCGGT
CAAGGTAACACACAGCGCAGAGACCCCATCGAGACTAACCATAGAGTTGC
GATGGGAGGCACAGGAGAAGAAAGAGGCATACCCCCGCTGGAAAAGCTGC
GAGAATGCCTCCTTGATCGAAGTCAGCCGATCGCGAAGAGGACTCACTCG
GCGTTCTTTCTGCGAACGATGGGCACGGTCGAGGCTGTTAACGTTGTCGG
TCAAGGTAACACACAGCGCAGAGACCCCATCGAGACTAACCATAGAGTTG
CG
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