mRNA_H-elongata_contig173259.4492.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig173259.4492.1
Unique NamemRNA_H-elongata_contig173259.4492.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig173259.4492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig173259contigH-elongata_contig173259:667..1165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size500
Cds size363
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930007.9264312-UTR-H-elongata_contig173259:666..8021622930007.9264312-UTR-H-elongata_contig173259:666..802Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig173259 667..802 +
1691679243.6710987-UTR-H-elongata_contig173259:666..8021691679243.6710987-UTR-H-elongata_contig173259:666..802Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig173259 667..802 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930007.942707-CDS-H-elongata_contig173259:802..11651622930007.942707-CDS-H-elongata_contig173259:802..1165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173259 803..1165 +
1691679243.6800838-CDS-H-elongata_contig173259:802..11651691679243.6800838-CDS-H-elongata_contig173259:802..1165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173259 803..1165 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig173259.4492.1prot_H-elongata_contig173259.4492.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig173259 803..1165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig173259.4492.1

>prot_H-elongata_contig173259.4492.1 ID=prot_H-elongata_contig173259.4492.1|Name=mRNA_H-elongata_contig173259.4492.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MSFVRPKYLSELRQSIAYSHARMRLRLLFQGNTLPEYRLAYRTGQLLFEN
LNQASKPPVGVSRLPSRWRAPTFFPVRRRKKSITPTRCGAERGGAPHAGE
KHKRNAHRIRPEPSPPSRSAQ
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mRNA from alignment at H-elongata_contig173259:667..1165+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig173259.4492.1 ID=mRNA_H-elongata_contig173259.4492.1|Name=mRNA_H-elongata_contig173259.4492.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=499bp|location=Sequence derived from alignment at H-elongata_contig173259:667..1165+ (Himanthalia elongata Himel1 dioecious)
GGGGTAAAGACTCGAAATAAAAAAAATCACGGTTGGTTCTGCTTGGCGTT
GCCTCTCCCTCATTCCTCCCCGAAATCGGGTGACATCCCCTCTCTTTGAC
GCCAAGCCCTCCAACAAACAGAGGTTTCGCCTTGGCATGTCTTTTGTTCG
GCCCAAGTACCTCTCAGAGCTACGGCAAAGTATAGCATATAGCCACGCCC
GGATGAGGTTAAGGCTCCTATTTCAAGGTAATACTTTACCCGAGTATAGA
TTGGCATACAGGACAGGACAGCTTTTGTTTGAAAACCTCAATCAAGCAAG
CAAGCCTCCTGTCGGAGTGTCCCGCCTCCCCTCTCGATGGCGCGCGCCGA
CTTTCTTCCCCGTGCGTCGACGGAAGAAATCGATAACGCCAACACGATGC
GGGGCGGAGAGAGGAGGCGCCCCGCACGCGGGAGAGAAACACAAGAGAAA
TGCCCACCGCATCCGCCCAGAGCCATCACCTCCGTCTCGCTCGGCGCAA
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Coding sequence (CDS) from alignment at H-elongata_contig173259:667..1165+

>mRNA_H-elongata_contig173259.4492.1 ID=mRNA_H-elongata_contig173259.4492.1|Name=mRNA_H-elongata_contig173259.4492.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig173259:667..1165+ (Himanthalia elongata Himel1 dioecious)
ATGTCTTTTGTTCGGCCCAAGTACCTCTCAGAGCTACGGCAAAGTATAGC
ATATAGCCACGCCCGGATGAGGTTAAGGCTCCTATTTCAAGGTAATACTT
TACCCGAGTATAGATTGGCATACAGGACAGGACAGCTTTTGTTTGAAAAC
CTCAATCAAGCAAGCAAGCCTCCTGTCGGAGTGTCCCGCCTCCCCTCTCG
ATGGCGCGCGCCGACTTTCTTCCCCGTGCGTCGACGGAAGAAATCGATAA
CGCCAACACGATGCGGGGCGGAGAGAGGAGGCGCCCCGCACGCGGGAGAG
AAACACAAGAGAAATGCCCACCGCATCCGCCCAGAGCCATCACCTCCGTC
TCGCTCGGCGCAAATGTCTTTTGTTCGGCCCAAGTACCTCTCAGAGCTAC
GGCAAAGTATAGCATATAGCCACGCCCGGATGAGGTTAAGGCTCCTATTT
CAAGGTAATACTTTACCCGAGTATAGATTGGCATACAGGACAGGACAGCT
TTTGTTTGAAAACCTCAATCAAGCAAGCAAGCCTCCTGTCGGAGTGTCCC
GCCTCCCCTCTCGATGGCGCGCGCCGACTTTCTTCCCCGTGCGTCGACGG
AAGAAATCGATAACGCCAACACGATGCGGGGCGGAGAGAGGAGGCGCCCC
GCACGCGGGAGAGAAACACAAGAGAAATGCCCACCGCATCCGCCCAGAGC
CATCACCTCCGTCTCGCTCGGCGCAA
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